ID: uc004ayu.2_intron_12_0_chr9_101547159_r.5p
GENE: (2)
chr9:101552186-101552435-


(2)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(13)
CELL-LINE 		(7)
CERVIX 		(7)
HEART 		(3)
HELA 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
UTERUS

Sense strand
GGACCTTGTAGACTACCTGGACCCGCTGACCACCGTCAGGCCCAAAACAGGTCAGGCTGCATGCCCCCCGTGGCTTCACAGAGGACCCCAAATTGTGTTTATGTGGCTTAAGCTGAGGATTGCTCTACTGGAAGGACACGCAGAACTCAGAGTCCAGCCCTGCAGACCACTGAGACTGAGGAAGTGGTGTGCTTAAGTATCGGGGGGATTGCCTGTGACATGCAGGTTCTGGGCCCACTCTCTGCAGAGT
........................................................................................................((((....(((((..(((((((.......)))...))))..))))).....))))...((.((((((...........)))))).))...........................................................
...........................................................................................92.................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR037943(GSM510481)
293DcrTN. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
................................................................................................GTTTATGTGGCTTAACTCC.......................................................................................................................................1924.000.00--3.00-1.003.002.00-1.002.001.00--1.001.00-1.002.001.00--1.00--1.00--1.00-----------1.00--1.00------
................................................................................................GTTTATGTGGCTTAACTC........................................................................................................................................1818.000.002.00-2.00-1.001.001.00-2.001.00----1.00-----1.00--1.00--1.00-1.00----1.00---1.00------1.00----
................................................................................................GTTTATGTGGCTTAAAAA........................................................................................................................................1816.000.0015.00--------------------------------------------1.00---
................................................................................................GTTTATGTGGCTTAATC.........................................................................................................................................179.000.00-9.00-----------------------------------------------
..........................................................GCATGCCCCCCGTGGC................................................................................................................................................................................1613.003.00----------------------1.00-------------1.00-1.00----------
.........................................................................................................................................................................CTGAGACTGAGGAAGTGG...............................................................1813.003.00-------2.00------------------------1.00----------------
................................................................................................GTTTATGTGGCTTAACTCG.......................................................................................................................................192.000.00------------------1.00---------------------------1.00--
..........................................................................................................CTTAAGCTGAGGATTGCTCTACTGGAAGGACAC...............................................................................................................3312.002.00---2.00---------------------------------------------
.....................................................................................................................................................................ACCACTGAGACTGAGAAG...................................................................181.000.00----------1.00--------------------------------------
................................................................................................GTTTATGTGGCTTAACTTC.......................................................................................................................................191.000.00----1.00--------------------------------------------
.........................................................................................................................GCTCTACTGGAAGGACACGCAGAA.........................................................................................................2411.001.00----------------1.00--------------------------------
.............................................................................................................................................................CCCTGCAGACCACTGAGACTGAGGAAG..................................................................2711.001.00-------------------1.00-----------------------------
..........................................................................................................................................................................TGAGACTGAGGAAGTGGTG.............................................................1911.001.00----------------------------------1.00--------------
.........AGACTACCTGGACCCGCTGAT............................................................................................................................................................................................................................211.000.00-------------------------1.00-----------------------
................................................................................................GTTTATGTGGCTTAAATAG.......................................................................................................................................191.000.00-------------1.00-----------------------------------
................................................................................................GTTTATGTGGCTTAACTAC.......................................................................................................................................191.000.00----1.00--------------------------------------------
................................................................................................................................................................................TGAGGAAGTGGTGTGCTTGGT.....................................................211.000.00-----------------------------------1.00-------------
...CCTTGTAGACTACCTGGACCCGCTGACCAC.........................................................................................................................................................................................................................3011.001.00----------------------------------------1.00--------
..........................................................................................................................CTCTACTGGAAGGACACGCAGAACCCAG....................................................................................................281.000.00-------------------1.00-----------------------------
................................................................................................................................................................................TGAGGAAGTGGTGTGCTTCTTT....................................................221.000.00----------1.00--------------------------------------
.................................................................................................................................................................................GAGGAAGTGGTGTGCTTA.......................................................1811.001.00-------1.00-----------------------------------------
.........................................................................................................................................................................................................................ACATGCAGGTTCTGGGCCCACCCTC........251.000.00---------------1.00---------------------------------
..................................................................................................................................................................................................AAGTATCGGGGGGATTGCCTGCGAC...............................251.000.00------------1.00------------------------------------
................................................................................................GTTTATGTGGCTTAAACCC.......................................................................................................................................191.000.00------------------------------1.00------------------
............................................AAACAGGTCAGGCTGCATGCCCCCCGCGG.................................................................................................................................................................................291.000.00---------------1.00---------------------------------
...............................................................................................TGTTTATGTGGCTTACCTC........................................................................................................................................191.000.00-----------------------------1.00-------------------
.............................................................................................................................................................CCCTGCAGACCACTGAGACTG........................................................................2111.001.00-------------------------------------------1.00-----
........................................................................................................................................................TCCAGCCCTGCAGACCACTGAGACCG........................................................................261.000.00------------1.00------------------------------------
...........ACTACCTGGACCCGC................................................................................................................................................................................................................................1530.330.33------------------------------------------------0.33
...........................................................CATGCCCCCCGTGGC................................................................................................................................................................................1530.330.33-----------------------------------------------0.33-

Antisense strand
GGACCTTGTAGACTACCTGGACCCGCTGACCACCGTCAGGCCCAAAACAGGTCAGGCTGCATGCCCCCCGTGGCTTCACAGAGGACCCCAAATTGTGTTTATGTGGCTTAAGCTGAGGATTGCTCTACTGGAAGGACACGCAGAACTCAGAGTCCAGCCCTGCAGACCACTGAGACTGAGGAAGTGGTGTGCTTAAGTATCGGGGGGATTGCCTGTGACATGCAGGTTCTGGGCCCACTCTCTGCAGAGT
........................................................................................................((((....(((((..(((((((.......)))...))))..))))).....))))...((.((((((...........)))))).))...........................................................
...........................................................................................92.................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR037943(GSM510481)
293DcrTN. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
............TCAGCGGGTCCAGGTAG............................................................................................................................................................................................................................. 1712.002.00---2.00---------------------------------------------
.................................................................................................................................................CTGCAGGGCTGGACTCTGAG..................................................................................... 2011.001.00-----------1.00-------------------------------------
............................................................................................................................................................TCAGTGGTCTGCAGGGC............................................................................. 1711.001.00-----------1.00-------------------------------------
.................................................................................................................................................................................................................................CTGCAGAGAGTGGGCCCAGAAC... 2211.001.00-----------------------------------------1.00-------
.........................................................................................................GCTTAAGCTGAGGATTTG............................................................................................................................... 181.000.00-------------------------------1.00-----------------
..............................................................................AATTTGGGGTCCTCTG............................................................................................................................................................ 1620.500.50---0.50---------------------------------------------
.............................................................................................................................................................CTCAGTGGTCTGCAGGG............................................................................ 1720.500.50-----------0.50-------------------------------------