ID: uc004ayg.1_intron_0_0_chr9_100846749_r.3p
GENE: TRIM14(6)
chr9:100846699-100846948-


(2)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(8)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TATACTGCTGTATCATGCCAGGATTTATCAGCATTCCCAAGGGAGCTTGCACGGTACTGACCGAGTGCTGAGACTACTGGTATTCCCAGCTGCCATGTGGCAGCAGCAGGAGCTACTAGAATATTCTCAGCACAGGAATGAGGCTTCCTTGGTTTCCATGTCTGTAAGGGTTACTGATCACTTACCTTCTTCTCTTTCAGACTTGAATCTGTAGACATTTCTTTATTGATATGGCAAATTGCTTGCAGAT
...................................................((((....)))).(((((((((.((((((((((((..((((((....))))))....)))).))))))..)).))))))))).((((.((((...))))...))))......(((((((((...)))).))))).................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR343336SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................TACTAGAATATTCTCAGCACAGGAATGAGGC..........................................................................................................31110.0010.0010.00-------------------------------------------
..............................................................................................................AGCTACTAGAATATTCTCAGCACAGG..................................................................................................................2616.006.00--6.00-----------------------------------------
.......................................................ACTGACCGAGTGCTGAGACT...............................................................................................................................................................................2016.006.00-----3.00--------2.00--------------------1.00--------
...........................................................................................................AGGAGCTACTAGAATATTCTCAGCACAGGA.................................................................................................................3015.005.002.00------3.00------------------------------------
..........................................................................................................CAGGAGCTACTAGAATATTCTCAGCACAGG..................................................................................................................3014.004.004.00-------------------------------------------
..TACTGCTGTATCATGCCAGGATTTATCAGC..........................................................................................................................................................................................................................3013.003.003.00-------------------------------------------
...........................................................................................................................TTCTCAGCACAGGAATGAGGCTTCCCTGG..................................................................................................292.000.00----2.00---------------------------------------
.................................................................................................................................................................................................................TGTAGACATTTCTTTATTGATATGGC...............2612.002.002.00-------------------------------------------
......................................AAGGGAGCTTGCACGGTACTGAC.............................................................................................................................................................................................2312.002.00-2.00------------------------------------------
......................................................................................................GCAGCAGGAGCTACTAGAATATTCTCAGCA......................................................................................................................3012.002.001.00--------------1.00----------------------------
.ATACTGCTGTATCATGCCAGGA...................................................................................................................................................................................................................................2212.002.00---2.00----------------------------------------
.......................................................ACTGACCGAGTGCTGAGACTA..............................................................................................................................................................................2112.002.00------2.00-------------------------------------
................................................................................................................................................................................ATCACTTACCTTCTTCTCTCCAG...................................................232.000.00----------------1.00-----------------1.00---------
.........................................................................................................................................ATGAGGCTTCCTTGGTTTCCATGT.........................................................................................2412.002.00------2.00-------------------------------------
........................................................................................................AGCAGGAGCTACTAGAATATTC............................................................................................................................2212.002.00-------------2.00------------------------------
.......................................................................................................CAGCAGGAGCTACTAGAATATTCTCAGCAC.....................................................................................................................3012.002.002.00-------------------------------------------
............................................................................................................................................................CATGTCTGTAAGGGTTAC............................................................................1812.002.00---2.00----------------------------------------
......................................................................................................................GAATATTCTCAGCACAGGAATGAGGCTT........................................................................................................2812.002.00----------2.00---------------------------------
..............................................................GAGTGCTGAGACTACTGGTATTCCC...................................................................................................................................................................2511.001.00-------------------------------------1.00------
...............TGCCAGGATTTATCAGCAT........................................................................................................................................................................................................................1911.001.00----------------------------1.00---------------
.........................................GGAGCTTGCACGGTACTG...............................................................................................................................................................................................1811.001.00-1.00------------------------------------------
........................................................................................................AGCAGGAGCTACTAGAATA...............................................................................................................................1911.001.00-1.00------------------------------------------
..................................TCCCAAGGGAGCTTGCACGGTACTGACC............................................................................................................................................................................................2811.001.001.00-------------------------------------------
....................................................................................................................TAGAATATTCTCAGCACAGGAATGAGGCTT........................................................................................................3011.001.001.00-------------------------------------------
...................AGGATTTATCAGCATTCCCAAGG................................................................................................................................................................................................................2311.001.00-1.00------------------------------------------
.......................................................ACTGACCGAGTGCTGAGACTAC.............................................................................................................................................................................2211.001.00---------------------------------1.00----------
.........................................................................................................................................................TTCCATGTCTGTAAGGGTTACTGATCAC.....................................................................2811.001.001.00-------------------------------------------
...............................................................................................................................................................................................CTCTTTCAGACTTGAATCTGT......................................2111.001.00------------------------------------1.00-------
....................................................................................................................................CAGGAATGAGGCTTCCTTGGTTTCC.............................................................................................2511.001.001.00-------------------------------------------
.............................................................................................................................................................................CTGATCACTTACCTTGG............................................................171.000.00---------------------------1.00----------------
..........................ATCAGCATTCCCAAGGGAGCTTGCACGGC...................................................................................................................................................................................................291.000.00------------------------------1.00-------------
...........................................................................................................AGGAGCTACTAGAATATTCTCAGCACAGGAA................................................................................................................3111.001.001.00-------------------------------------------
....................................................................................................................TAGAATATTCTCAGCACAGGA.................................................................................................................2111.001.00--------------------------------1.00-----------
.....................................................................................................................................................................AAGGGTTACTGATCACTT...................................................................1811.001.00-1.00------------------------------------------
.............CATGCCAGGATTTATCCGG..........................................................................................................................................................................................................................191.000.00-----------------------1.00--------------------
......................................................TACTGACCGAGTGCTGAGACTACTGGTATT......................................................................................................................................................................3011.001.001.00-------------------------------------------
....................................................................................................................................................................................CTTACCTTCTTCTCTTTCAG..................................................2011.001.00---------------------1.00----------------------
....................................................................................................................................................................................................TCAGACTTGAATCTGTAGACATTTCTTTATT.......................3111.001.001.00-------------------------------------------
........................................................................................................................................................................................................ACTTGAATCTGTAGACATTTCTTTATTGAT....................3011.001.001.00-------------------------------------------
.............................................................................................................................................................ATGTCTGTAAGGGTTACTGA.........................................................................2011.001.00---1.00----------------------------------------
..........................................................................................................................ATTCTCAGCACAGGAATGAGGCTTCCTTGGTC................................................................................................321.000.00----1.00---------------------------------------
...............................................................AGTGCTGAGACTACTGGTGTG......................................................................................................................................................................2111.001.00----1.00---------------------------------------
...........................................................ACCGAGTGCTGAGACTAC.............................................................................................................................................................................1811.001.00---------1.00----------------------------------
......................................................TACTGACCGAGTGCTGAGACT...............................................................................................................................................................................2111.001.00--------1.00-----------------------------------
......................................................................................................GCAGCAGGAGCTACTAGAATATTCT...........................................................................................................................2511.001.00-----------------1.00--------------------------
........................................................................................................AGCAGGAGCTACTAGAATATTCTCAGC.......................................................................................................................2711.001.00--------------------------------------1.00-----
........................................................................................................AGCAGGAGCTACTAGAATATTCTC..........................................................................................................................2411.001.00-------------------------1.00------------------
...............................................................AGTGCTGAGACTACTGGT.........................................................................................................................................................................1811.001.00-----------------------------1.00--------------
...................................................................................................................................................................................ACTTACCTTCTTCTCTTTCAGACTTGAATCT........................................3111.001.00-----------1.00--------------------------------
.................................................................................................................TACTAGAATATTCTCAGCACAGGAATG..............................................................................................................2711.001.001.00-------------------------------------------
............................................................CCGAGTGCTGAGACTACTGG..........................................................................................................................................................................2011.001.00--------------------1.00-----------------------
....................................................................................................CAGCAGCAGGAGCTACTAGAAT................................................................................................................................2211.001.00--------1.00-----------------------------------
....................................................................................................................TAGAATATTCTCAGCACAGGAATGAGGC..........................................................................................................2811.001.001.00-------------------------------------------
...................................................................................................................................................................GTAAGGGTTACTGATCACT....................................................................1911.001.00---1.00----------------------------------------
...................................CCCAAGGGAGCTTGCACGGT...................................................................................................................................................................................................2011.001.00-------------------1.00------------------------
............................................................CCGAGTGCTGAGACTACTGGTATTCCCAG.................................................................................................................................................................2911.001.00---------1.00----------------------------------
...........................................................ACCGAGTGCTGAGACTACTG...........................................................................................................................................................................2011.001.00-----------1.00--------------------------------
...........................................................................................................................................................................................................TGAATCTGTAGACATTTCTTTATTGATATGGC...............3211.001.001.00-------------------------------------------
.....................................CAAGGGAGCTTGCACGGTACTGA..............................................................................................................................................................................................2311.001.00----------------------------------------1.00---
..................................TCCCAAGGGAGCTTGCACGG....................................................................................................................................................................................................2011.001.00--------------------------1.00-----------------
..................................................................................................................................................................................CACTTACCTTCTTCTCTTTCAGACTTGA............................................2811.001.00-------------------------------1.00------------
................................ATTCCCAAGGGAGCTTGCACGGA...................................................................................................................................................................................................231.000.00---------------------------------------1.00----
................................ATTCCCAAGGGAGCTTGCACGGTACTGA..............................................................................................................................................................................................2811.001.00------------------1.00-------------------------
.......................................................................................................................................................................................................................CATTTCTTTATTGATATGGC...............2011.001.00----------------------1.00---------------------
......................................................................................................GCAGCAGGAGCTACTAGAATATTCTCAGCAC.....................................................................................................................3111.001.001.00-------------------------------------------
...................................CCCAAGGGAGCTTGCACG.....................................................................................................................................................................................................1811.001.00--------1.00-----------------------------------
............................................................................................................................................................CATGTCTGTAAGGGTTACT...........................................................................1911.001.00-1.00------------------------------------------
...............................................................................................................................................................................................................TCTGTAGACATTTCTTTATTGATGGC.................261.000.001.00-------------------------------------------
............................................................................................................GGAGCTACTAGAATATTCTCAGCAC.....................................................................................................................2511.001.001.00-------------------------------------------
................................................................................TATTCCCAGCTGCCATG.........................................................................................................................................................1720.500.50-------------------------------------------0.50

Antisense strand
TATACTGCTGTATCATGCCAGGATTTATCAGCATTCCCAAGGGAGCTTGCACGGTACTGACCGAGTGCTGAGACTACTGGTATTCCCAGCTGCCATGTGGCAGCAGCAGGAGCTACTAGAATATTCTCAGCACAGGAATGAGGCTTCCTTGGTTTCCATGTCTGTAAGGGTTACTGATCACTTACCTTCTTCTCTTTCAGACTTGAATCTGTAGACATTTCTTTATTGATATGGCAAATTGCTTGCAGAT
...................................................((((....)))).(((((((((.((((((((((((..((((((....))))))....)))).))))))..)).))))))))).((((.((((...))))...))))......(((((((((...)))).))))).................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR343336SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................................................TTACCTTCTTCTCTTTCAAGCA............................................... 221.000.00------------1.00-------------------------------
......................................................................................................................................................................................GTCTGAAAGAGAAGAAGGTA................................................ 2011.001.00-----1.00--------------------------------------
.....................................................................................................................................................................................TTACCTTCTTCTCTTTCAAATT............................................... 221.000.00------------1.00-------------------------------
.........GTATCATGCCAGGATTAA............................................................................................................................................................................................................................... 181.000.00---------1.00----------------------------------
.....................................................................................................................................................................................TTACCTTCTTCTCTTTCAAGTT............................................... 221.000.00-----------------------------------------1.00--
...................................................................................................TGTGCTGAGAATATTCTAGTAGCTCCTGCTGCTGC.................................................................................................................... 3511.001.00------------------------------------------1.00-
........................................GGGAGCTTGCACGGTAAA................................................................................................................................................................................................ 181.000.00------------------------1.00-------------------