| (1) B-CELL | (1) BREAST | (8) CELL-LINE | (2) CERVIX | (1) HELA | (2) LIVER | (3) OTHER | (3) SKIN | (1) TESTES |
| TACCTTGTTGAAAACCAGCCCCTCACCAGAGCGATCGCTATTGCTGAAATGTAAGACCCCCGGGAGTGGGGATAGGGTGGAGACGGTGGAGATGGTGGGATGTTGGGTGGAGGAGGATCATGGAAATGGAGGTCCCTCTTTTTTTCTCATTAGAATTTATTTATTTATTTATTTTAAGAACTTGTTTTTTAAAAAATGTTTATTATTAAAGGCAATAAAACAATACATGTTCATTGTAGAAAAATTAGAA .........................................................(((((....))))).(((((((((...((((((..((((((((....(((.(((((.((.((((....))))...))))))).))).))))))))...))))))......))))))))).......................................................................... ..................................................51.................................................................................................................................182.................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | TAX577580(Rovira) total RNA. (breast) | SRR444068(SRX128916) Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line) | SRR330913(SRX091751) tissue: normal skindisease state: normal. (skin) | SRR040036(GSM532921) G243N. (cervix) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR553576(SRX182782) source: Testis. (testes) | SRR343335 | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR040035(GSM532920) G001T. (cervix) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................AATTTATTTATTTATTTATTTTAAG........................................................................ | 25 | 1 | 43.00 | 43.00 | 19.00 | 17.00 | 3.00 | - | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .ACCTTGTTGAAAACCAGTATC.................................................................................................................................................................................................................................... | 21 | 8.00 | 0.00 | - | - | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTTCTAG....................................................................... | 26 | 4.00 | 0.00 | - | - | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATCTCT.......................................................................... | 23 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTCTTG........................................................................ | 25 | 2.00 | 0.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................TCACCAGAGCGATCGCTATTGCTGAAAT........................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................AGCGATCGCTATTGCTGAAA......................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................AGCCCCTCACCAGAGCGATCGCTA.................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AATTTATTTATTTATTTATTCTC.......................................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................ATTTATTTATTTATTTTAACAAG..................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTCCTG............................................................................ | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATCTTG.......................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................CCCCCGGGAGTGGGGGCC................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...........AAACCAGCCCCTCACCAGAGCGAT....................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTTATTCG...................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTTCCTG....................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................AGCGATCGCTATTGCTGAA.......................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTTCTAA....................................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATTCTTG......................................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............AACCAGCCCCTCACCAGAGCG......................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................................................................................................................TTTATTTATTTATTTATTTTAACTAG..................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................CTCACCAGAGCGATCGCT................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TAGAATTTATTTATTTATTTTTTG............................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................GGAGATGGTGGGATGTAG................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTCTCG........................................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................TTTATTTATTTATTTATTTTAACCGG..................................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CGGGAGTGGGGATAGGGG............................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .........................................................................................................................................................AATTTATTTATTTATTTATTTGAAG........................................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TACCTTGTTGAAAACCAGCCCCTCACCAGAGCGATCGCTATTGCTGAAATGTAAGACCCCCGGGAGTGGGGATAGGGTGGAGACGGTGGAGATGGTGGGATGTTGGGTGGAGGAGGATCATGGAAATGGAGGTCCCTCTTTTTTTCTCATTAGAATTTATTTATTTATTTATTTTAAGAACTTGTTTTTTAAAAAATGTTTATTATTAAAGGCAATAAAACAATACATGTTCATTGTAGAAAAATTAGAA .........................................................(((((....))))).(((((((((...((((((..((((((((....(((.(((((.((.((((....))))...))))))).))).))))))))...))))))......))))))))).......................................................................... ..................................................51.................................................................................................................................182.................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | TAX577580(Rovira) total RNA. (breast) | SRR444068(SRX128916) Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line) | SRR330913(SRX091751) tissue: normal skindisease state: normal. (skin) | SRR040036(GSM532921) G243N. (cervix) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR553576(SRX182782) source: Testis. (testes) | SRR343335 | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR040035(GSM532920) G001T. (cervix) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..CCTTGTTGAAAACCAGATC..................................................................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................GAGATGGTGGGATGTTAAG............................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..................CCCCTCACCAGAGCGAGT...................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........TGAAAACCAGCCCCTTCTG............................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................TATTGCTGAAATGTAACTG................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................CCTCTTTTTTTCTCAAAGA................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..............................................................................CATCTCCACCGTCTCC............................................................................................................................................................ | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |