ID: uc004axq.2_intron_9_0_chr9_100413656_f.5p
GENE: (10)
chr9:100413606-100413855+


(1)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(3)
LIVER 		(1)
OTHER 		(3)
SKIN

Sense strand
TGAGCTATCCAGGGAAGAACAAGATCCCCTTGAACTACCACATAGTTGAGGTATGAATTCCATGTGGAGCGTGTTTCTGAGTTTCAGAATCTTTCTGTTGGCTTTAAAGTATGATCTACTCTTGGCTTATTTATTTATTTATTTATTTATTGCTACTTGTCCAGCATTCAGAATTAATAGAAGCAAGGAAATTGCTGTCGGTTTTGGTGCTCTATTAGCCATGTTAGTAAAGAGAAAAAAGATTGGAACC
....................................................((((((.(((.(((((.(((((((..(((((.((((.....))))..)))))..))))))).)))))...)))...))))))................((((........))))..((((((..((...(((((.....)))))))..))))))............................................
..................................................51..........................................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
..................................................GTATGAATTCCATGTGGA......................................................................................................................................................................................18111.0011.00--11.00---------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATCTTG................................................................................................2911.000.004.006.00--1.00-------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCAG................................................................................................297.000.003.003.00--1.00-------------------
.............................................................................................................................CTTATTTATTTATTTATTTATCTAG....................................................................................................256.000.005.001.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTCAG....................................................................................................255.000.005.00-----------------------
................................................................TGGAGCGTGTTTCTGAGTTCAGA...................................................................................................................................................................234.000.00-----4.00------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCG....................................................................................................254.000.002.002.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCTTG...............................................................................................303.000.001.001.00--1.00-------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCTTG..................................................................................................273.000.00-1.00----1.001.00----------------
....................................................................................................................................................................................AAGCAAGGAAATTGCTGTCGGTT...............................................2312.002.00--------2.00---------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCAAG..................................................................................................272.000.001.001.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTCG.....................................................................................................242.000.002.00-----------------------
................................................................................................................................ATTTATTTATTTATTTATTTATCATG................................................................................................262.000.001.001.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTCTTG...................................................................................................262.000.001.001.00----------------------
..........................................................................................................................TGGCTTATTTATTTATTTATTTATTTACT...................................................................................................292.000.00---2.00--------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCG.................................................................................................282.000.002.00-----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATCCAG................................................................................................291.000.001.00-----------------------
.............GAAGAACAAGATCCCCTTGAA........................................................................................................................................................................................................................2111.001.00---------1.00--------------
..........................................................................................................................TGGCTTATTTATTTATTTATTTATTTATCGC.................................................................................................311.000.00---1.00--------------------
..............................................................................................................................TTATTTATTTATTTATTTATTTATCATG................................................................................................281.000.00-1.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCCTG...............................................................................................301.000.00-1.00----------------------
.................................ACTACCACATAGTTGAG........................................................................................................................................................................................................1711.001.00-----------------1.00------
..................................................................................................................................TTATTTATTTATTTATTTATTGCCCCC.............................................................................................271.000.00---1.00--------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCTAG...............................................................................................301.000.001.00-----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATCTCG................................................................................................291.000.00----1.00-------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCCG...................................................................................................261.000.00-1.00----------------------
..............................................................................................................................TTATTTATTTATTTATTTATTTATCTCG................................................................................................281.000.00-1.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTCATG...................................................................................................261.000.00-------1.00----------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCGAG...............................................................................................301.000.00------1.00-----------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCTAT..................................................................................................271.000.001.00-----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCTCG..................................................................................................271.000.001.00-----------------------
........................................CATAGTTGAGGTATGAATTCCATGT.........................................................................................................................................................................................2511.001.00------------------1.00-----
..........................................................................................................................TGGCTTATTTATTTATTTATTTATTTATTTATC...............................................................................................331.000.00---1.00--------------------
.............................................................................................................................CTTATTTATTTATTTATTTATAAAG....................................................................................................251.000.00-1.00----------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTAAAT..................................................................................................271.000.00----1.00-------------------
.................................................................................................................ATCTACTCTTGGCTTATTTATTTATTTATTTATT.......................................................................................................3411.001.00-1.00----------------------
.........................................................................................................................TTGGCTTATTTATTTATTTATTTATTTATTGG.................................................................................................321.000.00---1.00--------------------
.............................................................................................................................CTTATTTATTTATTTATTTATTTCAG...................................................................................................261.000.00----1.00-------------------
...................................................................................................................................................TATTGCTACTTGTCCCGG.....................................................................................181.000.00----------------1.00-------
.............................................................................................................................CTTATTTATTTATTTATTTATTTAATTG.................................................................................................281.000.001.00-----------------------
....................................ACCACATAGTTGAGGTG.....................................................................................................................................................................................................171.000.00--------------1.00---------
.............................................................................................................................CTTATTTATTTATTTATTTATTCTG....................................................................................................251.000.00-------1.00----------------
.............................................................................................................................CTTATTTATTTATTTATTTATATAG....................................................................................................251.000.00-1.00----------------------
.................................................................................................................................................................................TAGAAGCAAGGAAATTGGTG.....................................................201.000.00----------------------1.00-
.............................................................................................................................CTTATTTATTTATTTATTTATTTATTCATG...............................................................................................301.000.001.00-----------------------
..................................................GTATGAATTCCATGTGG.......................................................................................................................................................................................1711.001.00----------1.00-------------
....................................................................................................................................ATTTATTTATTTATTTATTGCTTCAG............................................................................................261.000.00------1.00-----------------
............................................................................................................................................................................................AAATTGCTGTCGGTT...............................................1511.001.00-------------1.00----------
............................................................................................................................GCTTATTTATTTATTTATTTCAG.......................................................................................................231.000.00-1.00----------------------
................GAACAAGATCCCCTTGAACTAC....................................................................................................................................................................................................................2211.001.00-------------------1.00----
................................................................................................................................ATTTATTTATTTATTTATTTATTGCTTCTA............................................................................................301.000.00-----1.00------------------
........................................................................................................................CTTGGCTTATTTATTTATTTATTTTTG.......................................................................................................271.000.00---1.00--------------------
........................................................................................................................................................................................................................................AGAAAAAAGATTGGAACCAGTT221.000.00-----------1.00------------
..................................................GTATGAATTCCATGTGGAGCGTGTTTCTGA..........................................................................................................................................................................3011.001.00----------1.00-------------
.............GAAGAACAAGATCCCCTT...........................................................................................................................................................................................................................1820.500.50-----------------------0.50

Antisense strand
TGAGCTATCCAGGGAAGAACAAGATCCCCTTGAACTACCACATAGTTGAGGTATGAATTCCATGTGGAGCGTGTTTCTGAGTTTCAGAATCTTTCTGTTGGCTTTAAAGTATGATCTACTCTTGGCTTATTTATTTATTTATTTATTTATTGCTACTTGTCCAGCATTCAGAATTAATAGAAGCAAGGAAATTGCTGTCGGTTTTGGTGCTCTATTAGCCATGTTAGTAAAGAGAAAAAAGATTGGAACC
....................................................((((((.(((.(((((.(((((((..(((((.((((.....))))..)))))..))))))).)))))...)))...))))))................((((........))))..((((((..((...(((((.....)))))))..))))))............................................
..................................................51..........................................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
.............................................................................TGAGTTTCAGAATCTTTTA.......................................................................................................................................................... 191.000.00--------------------1.00---
.........................................................................................................................................................................................................................................GAAAAAAGATTGGAACC 171.000.00---------------1.00--------
..................................................................................................................................................................................................................................GTAAAGAGAAAAAAGATTATT... 211.000.00------------1.00-----------
.................................................................................................................................................................................................................................AGTAAAGAGAAAAAAGATCTTT... 221.000.00-1.00----------------------
....................................................................................................................................................................................................................................AAAGAGAAAAAAGATTTGCA.. 201.000.00---1.00--------------------
.......................................................................................................................................................................................................................................GAGAAAAAAGATTGGAATC 191.000.00------1.00-----------------
..TCTTGTTCTTCCCTGGATAGCT.................................................................................................................................................................................................................................. 2211.001.00---------1.00--------------