ID: uc004awr.1_intron_3_0_chr9_99721180_r.5p
GENE: (1)
chr9:99734935-99735184-


(3)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCTTCCTTGAATTCTTTGCGTGGGGCCTTTTGACAACTCCAATGTTGACTGTAAGTATTGCTGAACTGGGTTTGTGTTTTGTAAGAGAAAGAGATAAGTTCTTAGGCATGTATCACTGTGTATGTCTAGATACGTGTTTGGGAGTAGCTCTTGATAGTGATTTAAAACAGCTTGTTTCATTGGTTTTTTTTTTTTTTTTTTTTCCATTGTGGTTTCTGAACCACATGTAACACAAAACACCTCTTTAAAT
..........................................................................................................................................((((((.((((..(((.(((...........)))....)))..))))...............))))))............................................
..................................................................................................................................131.........................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029127(GSM416756)
A549. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040016(GSM532901)
G645N. (cervix)
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAAAC............................................2738.000.0028.008.001.00-------1.00-------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGC...........................................278.000.008.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCGGC............................................266.000.006.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCAAAC..........................................295.000.003.002.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCGGC...............................................245.000.004.001.00----------------------------------------------
...............TTGCGTGGGGCCTTTTGACAAC.....................................................................................................................................................................................................................2215.005.00--------4.00-------1.00-------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAAAA...........................................284.000.002.002.00----------------------------------------------
...................................................................................................................................................................................................................GTTTCTGAACCACATGCTT....................194.000.00-----------2.00--------1.00-----1.00---------------------
.......................................................................................................................................GTTTGGGAGTAGCTCTG..................................................................................................174.000.00-------4.00----------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCAACC..........................................283.000.003.00-----------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTCTT.......................................283.000.00---1.00--2.00-----------------------------------------
................................................................................................................................................................................TCATTGGTTTTTTTTTTTTTTTTTTTCC..............................................283.000.001.002.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCGGC.............................................263.000.001.002.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCTA................................................233.000.001.002.00----------------------------------------------
...................................ACTCCAATGTTGACTGTT.....................................................................................................................................................................................................182.000.00---------2.00--------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATTTCAG......................................272.000.00-1.00---1.00------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTTTG.......................................282.000.00---2.00--------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGGG..........................................282.000.002.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAACC............................................272.000.002.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGG............................................262.000.002.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGCC..........................................282.000.001.00----------------------1.00------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCAAC.............................................262.000.002.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTACC............................................272.000.002.00-----------------------------------------------
....................................................................................................................................................................................................................TTTCTGAACCACATGGTT....................182.000.00---------1.00--1.00-----------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTGGC..........................................282.000.002.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCAAC...........................................272.000.002.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAC.............................................262.000.002.00-----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCGG............................................252.000.001.001.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAACT...........................................282.000.002.00-----------------------------------------------
.........AATTCTTTGCGTGGGGCCTTT............................................................................................................................................................................................................................2112.002.00-------------2.00----------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTG.........................................2631.331.33---0.330.33-0.67-----------------------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATGAGG.......................................241.000.00--1.00---------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGTT..........................................281.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCGGTT..........................................291.000.001.00-----------------------------------------------
.....................................................................GTTTGTGTTTTGTAAGAGAA.................................................................................................................................................................2021.001.00------------------1.00-----------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATGGA........................................251.000.00-1.00----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTCGGC.................................................231.000.00----------1.00-------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATTTCCC......................................271.000.001.00-----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCGGA...........................................261.000.00-1.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCAAAT..........................................291.000.00-1.00----------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATCATG.......................................281.000.00----1.00-------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCATTTTAG......................................301.000.00-----1.00------------------------------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCCATGGGA.......................................271.000.00-1.00----------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTCTA.......................................281.000.00----1.00-------------------------------------------
......................................................................................................................................................................ACAGCTTGTTTCATTGGTTTTTTTTTTTTTT.....................................................3111.001.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTGG...............................................251.000.001.00-----------------------------------------------
..........................................................................TGTTTTGTAAGAGAAAGAGCAA..........................................................................................................................................................221.000.00-----------------------------1.00------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTGGGC...........................................291.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCATCT..........................................281.000.00-----1.00------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCACC...........................................261.000.001.00-----------------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATGGAG.......................................261.000.00-1.00----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCCTGGG.........................................281.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTCCC..........................................281.000.00-1.00----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGGC..........................................281.000.001.00-----------------------------------------------
...................................ACTCCAATGTTGACTGTTC....................................................................................................................................................................................................191.000.00------------------------------------1.00-----------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCAACT..........................................271.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCGC.............................................251.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCTCT............................................261.000.00-1.00----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCAAC............................................261.000.001.00-----------------------------------------------
................................................................................................................................................................................TCATTGGTTTTTTTTTTTTTGC....................................................221.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTGGA..........................................281.000.00-1.00----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGAGG..........................................281.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCGGG.............................................261.000.00-1.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAATG............................................271.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTAAT..........................................281.000.001.00-----------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATTCTTT......................................251.000.001.00-----------------------------------------------
..........ATTCTTTGCGTGGGGCCTCGAC..........................................................................................................................................................................................................................221.000.00-1.00----------------------------------------------
................................................................................................................................................................................TCATTGGTTTTTTTTTTTTTAAC...................................................231.000.00----1.00-------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCCCG...........................................261.000.001.00-----------------------------------------------
..............................................................................................................................................................................TTTCATTGGTTTTTTTTTTTTTTCTTC.................................................271.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTGC...........................................271.000.001.00-----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCGGCC..........................................261.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCTTC.............................................261.000.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTCTTC................................................241.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCGA............................................271.000.001.00-----------------------------------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCCATTCAAA......................................281.000.00------1.00-----------------------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATGATG.......................................241.000.00-----1.00------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGCG..........................................281.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGGT..........................................281.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGCA...........................................271.000.00-1.00----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTGAAG............................................281.000.00-1.00----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGCCT..........................................281.000.00-1.00----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCCCAG..........................................271.000.001.00-----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCGGC..........................................261.000.001.00-----------------------------------------------
.........................................................................................AGAGATAAGTTCTTAAAGT..............................................................................................................................................191.000.00--------------------------------1.00---------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCAAT.............................................261.000.00-1.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCAAC............................................271.000.001.00-----------------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATTCGTC......................................271.000.00-1.00----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGAAT..........................................281.000.00--1.00---------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTTCCG......................................291.000.00-----1.00------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCTGG.............................................261.000.001.00-----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCCGG..........................................261.000.001.00-----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCCGGG..........................................271.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCCAC.............................................261.000.00-1.00----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCGC...........................................251.000.001.00-----------------------------------------------
............................................................................................................................................................................................TTTTTTTTTTTTTTTCCATTCCG.......................................231.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCAAA............................................261.000.001.00-----------------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATTTACG......................................271.000.00--1.00---------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCTAA.............................................261.000.00-1.00----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTGTTT...............................................251.000.001.00-----------------------------------------------
...................................................................................................................................................................................................................GTTTCTGAACCACATTCTT....................191.000.00---------------1.00--------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCGGTT..........................................271.000.00-1.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCTAA...............................................241.000.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTATTT.............................................271.000.00--1.00---------------------------------------------
....................................CTCCAATGTTGACTGTTC....................................................................................................................................................................................................181.000.00-------------------------------------1.00----------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTTCTG......................................291.000.00---1.00--------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCCCC.............................................261.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCCACC..........................................281.000.001.00-----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCGCC...........................................261.000.001.00-----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCGT...........................................251.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCAGGG..........................................281.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCAC............................................261.000.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTGGC..............................................261.000.00-1.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCAAC...........................................281.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCAAG.............................................261.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAAGG...........................................281.000.00-1.00----------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTTAGG......................................291.000.00------1.00-----------------------------------------
........GAATTCTTTGCGTGGGGCCTTT............................................................................................................................................................................................................................2211.001.00------------------------------1.00-----------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTTATG......................................291.000.00----1.00-------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCGGC...........................................281.000.001.00-----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCGCTG..........................................261.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCGT................................................231.000.00-1.00----------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATCTAG.......................................241.000.00----1.00-------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGCT..........................................281.000.001.00-----------------------------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCCGGTG.........................................281.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCGAG...........................................281.000.001.00-----------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATTTGG.......................................281.000.001.00-----------------------------------------------
...................GTGGGGCCTTTTGACAACTC...................................................................................................................................................................................................................2011.001.00-------------------------------1.00----------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCCATTTCAG......................................281.000.001.00-----------------------------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTTTTTTCCATCTCG.......................................251.000.00-----1.00------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCCAC............................................271.000.001.00-----------------------------------------------
............................................................................................................................................................................................TTTTTTTTTTTTTTTCCATTCCCC......................................241.000.00---1.00--------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAACC...........................................281.000.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTCACT.................................................231.000.00--1.00---------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAGGG...........................................281.000.001.00-----------------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATTGGGC......................................271.000.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTGTTG...............................................251.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTTGC..........................................281.000.001.00-----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTACTT...............................................251.000.00-1.00----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCAGG............................................271.000.00-1.00----------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCCCG..........................................261.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCGAC............................................261.000.001.00-----------------------------------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCCATTTAAG......................................281.000.00----1.00-------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTAACC..............................................251.000.00--1.00---------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTCC...........................................271.000.001.00-----------------------------------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCCATTCTT.......................................271.000.00---1.00--------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAAAA............................................271.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCGGG...........................................271.000.001.00-----------------------------------------------
................................................................................................................................................................................TCATTGGTTTTTTTTTTTTTTTTTTTTTG.............................................291.000.00-1.00----------------------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTACG................................................241.000.001.00-----------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTCCATCG.........................................261.000.00---1.00--------------------------------------------
..................................................................................................................................................................................................................GGTTTCTGAACCACATGATT....................201.000.00------------1.00-----------------------------------
...............................................................................................................................................................................TTCATTGGTTTTTTTTTTTTTCTTG..................................................251.000.00--1.00---------------------------------------------
................................................................................................................................................................................TCATTGGTTTTTTTTTTTTTTGGTG.................................................251.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCATT.............................................261.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCCTCCC.........................................301.000.001.00-----------------------------------------------
....................................................................................................................................................................................................................TTTCTGAACCACATGCTT....................181.000.00-----------1.00------------------------------------
.CTTCCTTGAATTCTTTGCGTGGGGCC...............................................................................................................................................................................................................................2621.001.00----------1.00-------------------------------------
....................TGGGGCCTTTTGACAACTCCAATGTTGACTG.......................................................................................................................................................................................................3111.001.00----------------------1.00-------------------------
.....................................................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTCACAA..........................................271.000.00--1.00---------------------------------------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCGGGC..........................................261.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCGCC............................................271.000.001.00-----------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATCCAA.......................................241.000.00-----1.00------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCAAC...............................................241.000.001.00-----------------------------------------------
...................................................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTCAACG..........................................291.000.001.00-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCTCAT..........................................281.000.00---1.00--------------------------------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCCATTG.........................................2530.670.67--0.330.33--------------------------------------------
.....CTTGAATTCTTTGCGTGGGGC................................................................................................................................................................................................................................2120.500.50---------------0.50--------------------------------
..............................................................................................................................................................................TTTCATTGGTTTTTTTTTTTTTTTTT..................................................2620.500.500.50-----------------------------------------------
..............................................................................................................................TAGATACGTGTTTGGGAGTAGCTCT...................................................................................................2520.500.50------------0.50-----------------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTC..............................................2620.500.500.50-----------------------------------------------
......................................................GTATTGCTGAACTGGGT...................................................................................................................................................................................1720.500.50---------0.50--------------------------------------
..........................................................................................................................................TGGGAGTAGCTCTTGATAGTGATTTAAAACAG................................................................................3220.500.50---------------------------------------0.50--------
..................................AACTCCAATGTTGACTGTA.....................................................................................................................................................................................................1920.500.50--------------------------------------------0.50---
.....................................................AGTATTGCTGAACTGGGTTTGTGTTTTGTA.......................................................................................................................................................................3020.500.50-0.50----------------------------------------------
.....CTTGAATTCTTTGCGTGGGGCCT..............................................................................................................................................................................................................................2320.500.50--------------------------------------0.50---------
................................................CTGTAAGTATTGCTGAACTGG.....................................................................................................................................................................................2120.500.50------------------------------------------0.50-----
......TTGAATTCTTTGCGTGGGGC................................................................................................................................................................................................................................2020.500.50---------------------------------------------0.50--
............................................TTGACTGTAAGTATTGCTGAACT.......................................................................................................................................................................................2320.500.50-----------------------------------------0.50------
......TTGAATTCTTTGCGTGGGGCCT..............................................................................................................................................................................................................................2220.500.50--------------------------------------0.50---------
........................................AATGTTGACTGTAAGTATTGCTGAACTGGGTTT.................................................................................................................................................................................3320.500.50----------------------------------------0.50-------
...........................................................................................................................GTCTAGATACGTGTTTGGGAGTAGCTCTT..................................................................................................2920.500.50-------------------------------------------0.50----
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCC.............................................2570.430.430.290.14----------------------------------------------
.........AATTCTTTGCGTGGG..................................................................................................................................................................................................................................1530.330.33----------------------------------------------0.33-
..........................................................................................................................................................................................TTTTTTTTTTTTTTTTTCCATTG.........................................2360.170.17--0.17---------------------------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTTTTTTCCATTGGG.......................................2560.170.17-0.17----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCCTTCC.........................................2970.140.430.14-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCCGGC..........................................2870.140.43-0.14----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCCTTTT.........................................2970.140.430.14-----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCCTCCC.........................................2970.140.43-0.14----------------------------------------------
....................................................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTCCGGGC.........................................2970.140.430.14-----------------------------------------------

Antisense strand
TCTTCCTTGAATTCTTTGCGTGGGGCCTTTTGACAACTCCAATGTTGACTGTAAGTATTGCTGAACTGGGTTTGTGTTTTGTAAGAGAAAGAGATAAGTTCTTAGGCATGTATCACTGTGTATGTCTAGATACGTGTTTGGGAGTAGCTCTTGATAGTGATTTAAAACAGCTTGTTTCATTGGTTTTTTTTTTTTTTTTTTTTCCATTGTGGTTTCTGAACCACATGTAACACAAAACACCTCTTTAAAT
..........................................................................................................................................((((((.((((..(((.(((...........)))....)))..))))...............))))))............................................
..................................................................................................................................131.........................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029127(GSM416756)
A549. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040016(GSM532901)
G645N. (cervix)
............................................................................TTTTGTAAGAGAAAGAGATAAGAG...................................................................................................................................................... 241.000.00----1.00-------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATTTT........................................ 231.000.00---------------------------------1.00--------------
.................................................................................................................................................................................................TTTTTTTTTTCCATTGGCAA..................................... 201.000.00----------------------------------1.00-------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTTTTCCATTGT........................................ 251.000.00--------------1.00---------------------------------
.................................................................................................................................................................................CATTGGTTTTTTTTTTTCG...................................................... 191.000.00-------------------------1.00----------------------
.................................................................................................................................................................................CATTGGTTTTTTTTTTTTTTTTTTCC............................................... 261.000.00-------------------1.00----------------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTACCG............................................. 271.000.00-----------------------------------1.00------------
......................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTCCACAC......................................... 271.000.00------------------------1.00-----------------------
..................................................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTCA............................................. 2721.000.00---------------------------1.00--------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTTTTCCATTGT........................................ 231.000.00--------------1.00---------------------------------
............................................................................................................................................................................................TTTTTTTTTTTTTTTCCATTTTTT...................................... 241.000.00-----------------1.00------------------------------
.................................................................................................................................................................................................TTTTTTTTTTCCATTGTGAAT.................................... 211.000.00---------------------1.00--------------------------
.............................................................................................................................................................................................TTTTTTTTTTTTTTCCATTGTA....................................... 221.000.00----------------------------1.00-------------------
...............................................................................................................................................................................................CACAATGGAAAAAAAAAAAA....................................... 2090.110.11-----------------------------------------------0.11