uc004awf.2_intron_3_0_chr9_99160597

AAAAATGTTTTGTGCTATGTTGCTTCGAACTCCTGGCCTCAAGTGATCCTCCTACCTCAGCCTCCTAAATAGCTGGGACTATAAGTGTGTGCCGCTGCGCCCAGCTCCCAAGAAAGATTTTTGAAAGTTATATTATGATACGTTGCTTTAATGAGTAGCGTTAAATAAATTATATTAATGTTTATAAAAATTATCAACAGGATGGAATCCGACGTGGTAGGCCCAGAGCAGATACTGTCCGCGATTTAAT
......................................................................................................((((..(((((.....)))))..))))...((((...(((((((((....)))))))))...))))..................................................................................
...............................................................................................96..........................................................................172............................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR343337

SRR343336

SRR343335

SRR343334

SRR207110(GSM721072)
Nuclear RNA. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189785

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)

SRR040009(GSM532894)
G727T. (cervix)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)

SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)

SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)

SRR553575(SRX182781)
source: Kidney. (Kidney)

SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)

GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)

GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)

TAX577740(Rovira)
total RNA. (breast)

SRR037937(GSM510475)
293cand2. (cell line)

SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)

SRR189786

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)

SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)

SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)

......................................................................................................................................................ATGAGTAGCGTTAAAGGG..................................................................................

142.00

1.00

52.00

41.00

24.00

20.00

1.00

2.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAAGG...................................................................................

129.00

1.00

34.00

31.00

19.00

15.00

24.00

3.00

2.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAAGGGG.................................................................................

65.00

1.00

24.00

26.00

3.00

4.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAAG....................................................................................

53.00

1.00

21.00

30.00

2.00

......................................................................................................................................................ATGAGTAGCGTTAAAGC...................................................................................

14.00

1.00

6.00

1.00

4.00

2.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAAGCG..................................................................................

9.00

1.00

5.00

2.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAAGCGG.................................................................................

6.00

1.00

2.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAAGGGA.................................................................................

3.00

1.00

2.00

......................................................................................................................................................ATGAGTAGCGTTAAAGA...................................................................................

3.00

1.00

.......................................................................................................................................................................................................GGATGGAATCCGACGTGGTA...............................

2.00

......................................................................................................................................................................................................AGGATGGAATCCGACG....................................

2.00

......................................................................................................................................................ATGAGTAGCGTTAAACAGG.................................................................................

2.00

1.00

2.00

....................................................................................................CCAGCTCCCAAGAAAACCC...................................................................................................................................

2.00

0.00

2.00

.................................TGGCCTCAAGTGATCCTCCTAAA..................................................................................................................................................................................................

1.00

0.00

1.00

.......................................CAAGTGATCCTCCTAAGAG................................................................................................................................................................................................

1.00

0.00

1.00

........................................................TCAGCCTCCTAAATAGCTGGGACTAAGG......................................................................................................................................................................

1.00

0.00

1.00

.......................TTCGAACTCCTGGCCTCGAGT..............................................................................................................................................................................................................

1.00

0.00

1.00

................................................................................................................................................................................................ATCAACAGGATGGAAGAAA.......................................

1.00

0.00

1.00

......................................................................................................................................................ATGAGTAGCGTTAAA.....................................................................................

1.00

....................................................................................................................................................................................................................................CAGATACTGTCCGCGATTT...

1.00

................................................................................................................................................................................................................CCGACGTGGTAGGCCCAGAG......................

1.00

......................................................................................................................................................................................................AGGATGGAATCCGACGTG..................................

1.00

.................................TGGCCTCAAGTGATCCTCCTAGA..................................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................................................................CGACGTGGTAGGCCCAGAGCAGATA................

1.00

........................................................................................................................................................................................................GATGGAATCCGACGTGGT................................

1.00

............................................................................................................................................................................................................GAATCCGACGTGGTAGGCCCAGAGCAGAC.................

1.00

0.00

1.00

.........................................................................................................................................................................................................ATGGAATCCGACGTGGTAGGCCCAGAGCA....................

1.00

.................TGTTGCTTCGAACTC..........................................................................................................................................................................................................................

0.25

AAAAATGTTTTGTGCTATGTTGCTTCGAACTCCTGGCCTCAAGTGATCCTCCTACCTCAGCCTCCTAAATAGCTGGGACTATAAGTGTGTGCCGCTGCGCCCAGCTCCCAAGAAAGATTTTTGAAAGTTATATTATGATACGTTGCTTTAATGAGTAGCGTTAAATAAATTATATTAATGTTTATAAAAATTATCAACAGGATGGAATCCGACGTGGTAGGCCCAGAGCAGATACTGTCCGCGATTTAAT ......................................................................................................((((..(((((.....)))))..))))...((((...(((((((((....)))))))))...)))).................................................................................. ...............................................................................................96..........................................................................172............................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR343337	SRR343336	SRR343335	SRR343334	SRR207110(GSM721072) Nuclear RNA. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189785	SRR207116(GSM721078) Nuclear RNA. (cell line)	SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin)	SRR040009(GSM532894) G727T. (cervix)	SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin)	SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin)	SRR033719(GSM497064) 6hr Activated B cell line (ABC158). (B cell)	DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line)	SRR330913(SRX091751) tissue: normal skindisease state: normal. (skin)	SRR553575(SRX182781) source: Kidney. (Kidney)	SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood)	GSM450604(GSM450604) miRNA sequencing raw reads from post-mortem s. (brain)	SRR191566(GSM715676) 94genomic small RNA (size selected RNA from t. (breast)	GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela)	TAX577740(Rovira) total RNA. (breast)	SRR037937(GSM510475) 293cand2. (cell line)	SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin)	SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell)	SRR387910(GSM843862) antibody for ip: Ago2. (ago2 cell line)	SRR033720(GSM497065) EBV activated B cell line (EBV159). (B cell)	SRR189786	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)	SRR060981(GSM569185) Human centroblast [09-001]. (cell line)	SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart)
............................ACTCCTGGCCTCAAGTGATCGAC.......................................................................................................................................................................................................	23		2.00	0.00	-	-	-	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................TCCTACCTCAGCCTCCTTCGC....................................................................................................................................................................................	21		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................................CAACAGGATGGAATCCCG......................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
............................ACTCCTGGCCTCAAGTGATCCTCGG.....................................................................................................................................................................................................	25		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................ACTCCTGGCCTCAAGTGATCCTCCTACG..................................................................................................................................................................................................	28		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................CCTCAAGTGATCCTCCTGGAG.................................................................................................................................................................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................GTAGGAGGATCACTTGAGG...................................................................................................................................................................................................	19	0	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................TTCGAACTCCTGGCCTCAAGTGAT...........................................................................................................................................................................................................	24		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
..................................................................AAATAGCTGGGACTATCTA.....................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................TGGCCTCAAGTGATCCTCCTTAGA.................................................................................................................................................................................................	24		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
...................................................................................................................................................................................................CCACGTCGGATTCCATCCTGTT.................................	22	1	1.00	1.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................ATAAGTGTGTGCCGCTTC........................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......TTTTGTGCTATGTTGGGAC................................................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
............................ACTCCTGGCCTCAAGTGATCCTCCTCGG..................................................................................................................................................................................................	28		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................................................................GTAGGCCCAGAGCAGATTC...............	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................ATCCTCCTACCTCAGCCTCCTAAAA....................................................................................................................................................................................	25		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-
.................................................................................................TCTTGGGAGCTGGGCG.........................................................................................................................................	16	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................TCCTACCTCAGCCTCCTTACT....................................................................................................................................................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................TGCCGCTGCGCCCAGCTGAC.............................................................................................................................................	20		0.33	0.00	-	-	-	-	-	-	-	-	-	-	0.33	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................AGCTGGGCGCAGCGGCA................................................................................................................................................	17	3	0.33	0.33	-	-	-	-	-	0.33	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-