ID: uc004avb.1_intron_0_0_chr9_97683628_f.3p
GENE: (1)
chr9:97686068-97686317+


(2)
AGO2.ip
(2)
B-CELL
(7)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(2)
FIBROBLAST
(8)
HEART
(1)
HELA
(1)
KIDNEY
(4)
LIVER
(1)
OTHER
(31)
SKIN
(1)
UTERUS
(2)
XRN.ip

Sense strand
CGGCCACCTGAACTACAGCCAGAAACATAAACTGCCACTTTATTTATGTCTGAAAGCATCTAAGCCGCAAGCCTATCTGTCATGATCTAGCATGCACATGATAATAACAGGCTTGCCAGGCTAGGAAAGCTGCCCCATCGGATGGCCATGAGGACAGGCTCTAACAAGACTCTGTGCATTTTCTCCCCCATTATCCACAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGACAGGAGGGAACCATC
...............................................((((...(((.(((.((((((((((((((((((((((......)))).))).)))......))))))))..)))).)))...(((((.(((.((....))))).)).))))))......))))................................................................................
............................................45.................................................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR343336SRR343337SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..................................................TGAAAGCATCTAAGC.........................................................................................................................................................................................15470.7570.7527.0030.257.505.50-----------------------------0.25-------------------------------0.25----------------
.................................................CTGAAAGCATCTAAGCG........................................................................................................................................................................................17465.5061.2516.2516.7513.7514.00-1.25-0.25-------0.25-0.500.25---------------0.500.500.250.25--------0.25---------------------0.250.25------------
.................................................CTGAAAGCATCTAAGC.........................................................................................................................................................................................16461.2561.2516.2512.5016.2514.75----------------------------0.250.25---0.25--0.25-----------------0.25------------0.25----------
..................................................TGAAAGCATCTAAGCG........................................................................................................................................................................................16453.7570.7516.0012.0011.7513.00---0.50-----0.25------------------------------------0.25-------------------------------
.................................................CTGAAAGCATCTAAGCGGG......................................................................................................................................................................................19430.0061.254.502.754.504.509.750.75-0.25-0.250.250.25-0.250.25----0.25----------------------0.25--0.25---0.25--0.25---------0.25------------0.25------
.................................................CTGAAAGCATCTAAGCGG.......................................................................................................................................................................................18426.2561.256.506.255.254.25------0.25--0.250.250.25--0.25----0.25--------0.50---0.25---0.25------0.25------0.25--0.25-0.25----------------0.25--0.25--
.................................................CTGAAAGCATCTAAGCGGGA.....................................................................................................................................................................................20421.2561.252.500.752.503.256.500.75---2.00------0.250.25---------------------0.50---0.25-----------0.25----0.25--0.25--0.250.25--0.25----------0.25
..................................................TGAAAGCATCTAAGCGG.......................................................................................................................................................................................17419.2570.754.004.254.005.00-1.25-0.25---------0.25---------------------------------0.25------------------------------
..................................................TGAAAGCATCTAAGCGGGA.....................................................................................................................................................................................19411.2570.752.251.252.502.751.00----0.25-------0.25----0.25------------------0.25-0.25---------0.25----------------------------
..................................................TGAAAGCATCTAAGCGGG......................................................................................................................................................................................18411.2570.752.001.251.502.501.501.00--------------------------------0.50---0.25------------------0.25--0.25---------------0.25-
.................................................CTGAAAGCATCTAAGTAGG......................................................................................................................................................................................196.000.00-------1.002.00----1.00-------1.001.00-----------------------------------------------------------
................................................TCTGAAAGCATCTAAGCGG.......................................................................................................................................................................................195.000.001.00----4.00----------------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGCATC......................................................................................................................................................................................1945.0061.25------5.00---------------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGTGG.......................................................................................................................................................................................184.000.00--------1.00--2.00-------------1.00--------------------------------------------------------
.................................................CTGAAAGCATCTAAGTAG.......................................................................................................................................................................................184.000.00-------3.00--1.00-----------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGCGA.......................................................................................................................................................................................1843.7561.250.750.501.750.75------------------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGTGGG......................................................................................................................................................................................193.000.00----1.00-----1.00------------1.00----------------------------------------------------------
.................................................CTGAAAGCATCTAAGCGC.......................................................................................................................................................................................1842.0061.25-----1.75----------------------------0.25-----------------------------------------------
.................................................CTGAAAGCATCTAAGCGATC.....................................................................................................................................................................................2041.2561.25------1.25---------------------------------------------------------------------------
............................................................................................................................................................................................................................CTCAGAGCATCTTGACAGGAGGGAA.....2511.001.00------------------------------1.00---------------------------------------------------
..................................................TGAAAGCATCTAAGCGGA......................................................................................................................................................................................1841.0070.750.250.75--------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CTTGACAGGAGGGAACCAT.1911.001.00-----------------------------1.00----------------------------------------------------
..........................................................................................................................................................CAGGCTCTAACAAGACAG..............................................................................181.000.00--------------------------1.00-------------------------------------------------------
.......................................................................................................................................................................................................................CCTCTCTCAGAGCATCTT.................1811.001.00--------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................TTTTCTCCCCCATTATTCTT....................................................201.000.00-------1.00--------------------------------------------------------------------------
..........................................................................................................ACAGGCTTGCCAGGCTGGGC............................................................................................................................201.000.00---------------------------1.00------------------------------------------------------
....................................................................................................................................................TGAGGACAGGCTCTAACAAGACT...............................................................................2311.001.00------------1.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................CAGAGCATCTTGACAGGAGGGAACC...2511.001.00--------------------1.00-------------------------------------------------------------
................................................................................................................................................GCCATGAGGACAGGCTCTAACA....................................................................................2211.001.00------------1.00---------------------------------------------------------------------
.................................................................................................................................................................................................TCCACAGCCCACACATCATGT....................................2111.001.00------------------------1.00---------------------------------------------------------
...............................................GTCTGAAAGCATCTAAGG.........................................................................................................................................................................................181.000.00---------------1.00------------------------------------------------------------------
................................................TCTGAAAGCATCTAAGCGGGA.....................................................................................................................................................................................211.000.00------------------1.00---------------------------------------------------------------
................................................TCTGAAAGCATCTAAGCG........................................................................................................................................................................................181.000.00-------------------1.00--------------------------------------------------------------
...................................................................................................................................................................................................................................CATCTTGACAGGAGGGAACCATC2311.001.00----------------------------1.00-----------------------------------------------------
.................................................CTGAAAGCATCTAAGCGTGA.....................................................................................................................................................................................2041.0061.25---------0.25----------0.25------------0.25---------------------------------------0.25--------
.................................................CTGAAAGCATCTAAGCGGA......................................................................................................................................................................................1940.7561.25-0.75--------------------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGCGT.......................................................................................................................................................................................1840.7561.25---------0.25-------------------------------------------------------------------0.250.25---
..................................................TGAAAGCATCTAAGCGA.......................................................................................................................................................................................1740.7570.75--0.250.50------------------------------------------------------------------------------
..................................................TGAAAGCATCTAAGCGTGA.....................................................................................................................................................................................1940.5070.75-------0.25-0.25------------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGCACG......................................................................................................................................................................................1940.5061.25-----------------0.25--------------------------------------0.25-------------------------
.................................................CTGAAAGCATCTAAGCACGA.....................................................................................................................................................................................2040.5061.25-----------------------------------------0.25--------------------------------0.25-------
..................................................TGAAAGCATCTAAGCGC.......................................................................................................................................................................................1740.5070.750.25---------0.25-----------------------------------------------------------------------
..................................................TGAAAGCATCTAAGCACG......................................................................................................................................................................................1840.2570.75------------------------------------------------0.25---------------------------------
.................................................CTGAAAGCATCTAAGCGTG......................................................................................................................................................................................1940.2561.25-------0.25--------------------------------------------------------------------------
.................................................CTGAAAGCATCTAAGCGTAA.....................................................................................................................................................................................2040.2561.25----------------0.25-----------------------------------------------------------------
..................................................TGAAAGCATCTAAGCACGA.....................................................................................................................................................................................1940.2570.75------------------------------------------------------------------------0.25---------
..................................................TGAAAGCATCTAAGCAC.......................................................................................................................................................................................1740.2570.75---------------------0.25------------------------------------------------------------
.................................................CTGAAAGCATCTAAGCGCCA.....................................................................................................................................................................................2040.2561.25-------0.25--------------------------------------------------------------------------

Antisense strand
CGGCCACCTGAACTACAGCCAGAAACATAAACTGCCACTTTATTTATGTCTGAAAGCATCTAAGCCGCAAGCCTATCTGTCATGATCTAGCATGCACATGATAATAACAGGCTTGCCAGGCTAGGAAAGCTGCCCCATCGGATGGCCATGAGGACAGGCTCTAACAAGACTCTGTGCATTTTCTCCCCCATTATCCACAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGACAGGAGGGAACCATC
...............................................((((...(((.(((.((((((((((((((((((((((......)))).))).)))......))))))))..)))).)))...(((((.(((.((....))))).)).))))))......))))................................................................................
............................................45.................................................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR343336SRR343337SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
............................................................................................................................................GTCCTCATGGCCATC............................................................................................... 1523.003.00------3.00---------------------------------------------------------------------------
.......TTTATGTTTCTGGCTGTAGTTCAG........................................................................................................................................................................................................................... 2411.001.00--------------1.00-------------------------------------------------------------------
........................ACATAAACTGCCACTTAGTG.............................................................................................................................................................................................................. 201.000.00----------------1.00-----------------------------------------------------------------
........................................................AGGCTTGCGGCTTAGATG................................................................................................................................................................................ 1811.001.00-------------------------------1.00--------------------------------------------------
..........................................................................................................................................................................................................................GTCAAGATGCTCTGAGAG.............. 1830.330.33--------------------------------------------0.33-------------------------------------