ID: uc004aub.2_intron_9_0_chr9_96420519_f.3p
GENE: (10)
chr9:96421593-96421842+


(2)
AGO2.ip 		(1)
B-CELL 		(5)
BRAIN 		(5)
BREAST 		(23)
CELL-LINE 		(2)
CERVIX 		(6)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(19)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCTCTGGTACTTGGTTTGTCCACCTATTGATGGGGGCTCACAGCAGAGACCTCTTGCCAGGGCAGAGTTTGGCTCGGAAGCCCCTCGCCTCATGCTCATCTGAGTGGCTCGGCAGTCAGGCGACAGCCTGCAAGAATGCAGGGGTAAGTCAGGACCACGGGAGGTGTCTGGTGCTGACCCTGGGTCCGGTTGTCCTGCAGGCTTTGGCAGAGCATGAGGACGAGCTCCCGGAGCACTTCAAACCTTCACA
........................................................................................................................................(((((((...((((.(((((.((((.(((.......)))...))))))))))))).)))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGT.................................................21122.009.004.002.00--2.001.00-3.00----1.00-2.001.00-------------1.00------1.00------1.00---------1.00-----------1.00--1.00--
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGA.................................................21116.009.00-3.00--1.00-1.00----1.00----1.00----1.00-----------------1.001.00---1.00--1.00---1.00-----1.00---1.001.00--------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGGGT........................................................................................26112.003.00--5.006.00---------------------------------------------------1.00---------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAG..................................................2019.009.00-1.00---1.00--1.001.00---1.00------1.00--1.00--1.00-----1.00--------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACG...........................................................................................2415.005.00-1.00--1.00-------1.00-----2.00----------------------------------------------------
...................................................................................................................................................................................CTGGGTCCGGTTGTCCTGCAGT.................................................225.000.00---------1.00-------1.00------------------------1.00---------1.00-------1.00----------
...................................................................................................................................................................................CTGGGTCCGGTTGTCCTGCAGA.................................................224.000.00------2.00--1.00--------------------1.00----------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGG..........................................................................................2413.003.00-----1.00---------------------------1.00------------------------1.00------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGTT................................................2213.009.00------1.001.00--------------------------------------------------------1.00------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGGG.........................................................................................2513.003.002.00-----------------------1.00----------------------------------------------
..................................................................................................................................................................................CCTGGGTCCGGTTGTCCTGCAGAAA...............................................253.000.00----------3.00------------------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGAA................................................2213.009.00-----1.00----------------------1.00-------------------------------------1.00----
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGG.........................................................................................2613.003.002.00-------------------------------------------------1.00--------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGTAG...............................................2311.009.00-------------------1.00---------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGGTCT......................................................................................2911.003.00--------------------------------------------------------1.00--------------
...........................................................................................................................................................................................................................ACGAGCTCCCGGAGCAC..............1711.001.00---------------------------------------------------------------1.00-------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCAA............................................................................................221.000.001.00----------------------------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGGT........................................................................................2711.003.00---------------------------------------------------------------------1.00-
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGAT................................................2211.009.00---------------------------1.00-------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCACT.................................................211.000.00----1.00------------------------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCAAAA..........................................................................................251.000.00-------------------------------------------------1.00---------------------
.....................................................................................................................................................CAGGACCACGGGAGGGGTC..................................................................................191.000.00---------------------------------------------1.00-------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAG..................................................................................................1811.001.00--------------------------------------1.00--------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGACA..............................................................................................221.000.00----------------------------------------------1.00------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACG...........................................................................................2311.001.00-----------------------------------------1.00-----------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGC.................................................2111.009.00--------1.00--------------------------------------------------------------
...................................................................................................................................AAGAATGCAGGGGTAAGTCAGGACCACGGG.........................................................................................3011.001.00---------------1.00-------------------------------------------------------
...........................................................................................................................................................................................................TTGGCAGAGCATGAGAC..............................171.000.00----------------------1.00------------------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCAAGGG.........................................................................................251.000.00----------------------------------1.00------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGACCACG...........................................................................................2511.001.00-----------1.00-----------------------------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGAACAC............................................................................................2411.001.00-----------------------------------------------------------1.00-----------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACT..............................................................................................211.000.00-------------------------------------------------------------------1.00---
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGTTT...............................................2311.009.00-------------1.00---------------------------------------------------------
...................................................................................................................................................GTCAGGACCACGGGAGG......................................................................................1711.001.00--------1.00--------------------------------------------------------------
..................................................................................................................................................................................CCTGGGTCCGGTTGTCCTGCAGT.................................................231.000.00-----------------1.00-----------------------------------------------------
..........................................................................................................................................................................................................TTTGGCAGAGCATGAGGACG............................2011.001.00------------------------------------------------------1.00----------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGT.........................................................................................2611.001.00--------------------1.00--------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGAAT...............................................2311.009.001.00----------------------------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAAT.................................................211.000.001.00----------------------------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGA................................................................................................1911.001.00-----------------------------------1.00-----------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCGGAA................................................221.000.00----------------1.00------------------------------------------------------
..........................................................................................................................................CAGGGGTAAGTCAGGACCACGGGT........................................................................................241.000.00-------------------1.00---------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGG..........................................................................................2511.001.00-------------------------1.00---------------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGGGG........................................................................................2611.003.00--1.00--------------------------------------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGA................................................................................................2011.001.00-------------------------------------1.00---------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGACCAC............................................................................................2411.001.00-----1.00-----------------------------------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCA...................................................................................................1711.001.00-------------------------------1.00---------------------------------------
..................................................................................................................................................................................................................AGCATGAGGACGAGCT........................1620.500.50----------------------------------------------------------------------0.50

Antisense strand
TCTCTGGTACTTGGTTTGTCCACCTATTGATGGGGGCTCACAGCAGAGACCTCTTGCCAGGGCAGAGTTTGGCTCGGAAGCCCCTCGCCTCATGCTCATCTGAGTGGCTCGGCAGTCAGGCGACAGCCTGCAAGAATGCAGGGGTAAGTCAGGACCACGGGAGGTGTCTGGTGCTGACCCTGGGTCCGGTTGTCCTGCAGGCTTTGGCAGAGCATGAGGACGAGCTCCCGGAGCACTTCAAACCTTCACA
........................................................................................................................................(((((((...((((.(((((.((((.(((.......)))...))))))))))))).)))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
...................................GCTCACAGCAGAGACCTCTG................................................................................................................................................................................................... 201.000.00------------------------------------------------1.00----------------------
..........................................................................................................................................................AGACACCTCCCGTGG................................................................................. 1520.500.50---------------------0.50-------------------------------------------------