ID: uc004atw.2_intron_10_0_chr9_96305754_f.3p
GENE: (11)
chr9:96312659-96312908+


(1)
AGO2.ip
(2)
BRAIN
(16)
BREAST
(14)
CELL-LINE
(3)
CERVIX
(2)
HEART
(1)
HELA
(1)
OTHER
(23)
SKIN

Sense strand
GTAAAACATTCTGACATCCTGTTTTCATTTGTAATGGTATCATCAAATGAAAGTAGAAAAGTAGAAAAGCTGAATAAGAAATCACATGGGTCTTCTTAGCTCACATCATCCGGGATTTACCTAGAACCTCCCACTGGACTTGTCTATATGACGGGCGACCACTCAGTAATCACCAACCTTTTGTTTCTGCCCCTCACCAGGTACATGGTGCAGTGGCCGGGAGCACGCATCCTTCGGCGTCAGGAGCTAG
....................................................(((((.((((.....((((((..((((..((....)).)))).))))))..........((((.............)))).....)))).))))).....((....))..........................................................................................
..................................................51......................................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
TAX577589(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM532886(GSM532886)
G850T. (cervix)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
.....................................................TAGAAAAGTAGAAAAGGGG..................................................................................................................................................................................1958.000.0058.00--------------------------------------------------------------
.....................................................TAGAAAAGTAGAAAAGGGGA.................................................................................................................................................................................2046.000.0038.00-----7.00--1.00-----------------------------------------------------
..................................................................................................................................................................................................................................GCATCCTTCGGCGTCAGG......1818.008.00----8.00----------------------------------------------------------
.............................................................................................................................................................................................................................AGCACGCATCCTTCGGCGTCAGGAGC...2612.002.00---------------2.00-----------------------------------------------
...........................................................AGTAGAAAAGCTGAATAAG............................................................................................................................................................................1912.002.00----------2.00----------------------------------------------------
..........................................................................................................................................................................................................................GGGAGCACGCATCCTTCGGCGTCAGG......2612.002.00-----2.00---------------------------------------------------------
.............................................................................................................................................................................................................TGGTGCAGTGGCCGGGAGCACGCACCCC.................282.000.00-------------2.00-------------------------------------------------
...........................................CAAATGAAAGTAGAAAGCAT...........................................................................................................................................................................................202.000.00---------2.00-----------------------------------------------------
.....................................................TAGAAAAGTAGAAAAGGGGT.................................................................................................................................................................................201.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................................................................CGGGAGCACGCATCCTTCGGCGTCAGGA.....2811.001.00----------------------------1.00----------------------------------
.........................................................................................................................................................................................................TACATGGTGCAGTGGCCGGGAGCACGCACCCT.................321.000.00-------------------------------1.00-------------------------------
........................................................................................................................................................................ATCACCAACCTTTTGGCG................................................................181.000.00---------------------------1.00-----------------------------------
.............................TGTAATGGTATCATCAAATGAAAGTAGAAAA..............................................................................................................................................................................................3111.001.00-------------------------1.00-------------------------------------
.......................................................GAAAAGTAGAAAAGCTGAATAAGAAATC.......................................................................................................................................................................2811.001.00--------------------------------1.00------------------------------
...........................................................................................................................................................................................................CATGGTGCAGTGGCCGG..............................1711.001.00---------------------1.00-----------------------------------------
..................................................AAGTAGAAAAGTAGAAAAGCTG..................................................................................................................................................................................2211.001.00--------------------1.00------------------------------------------
...............................................................................................................................................................................................................................CACGCATCCTTCGGCGTCAGGAGCTAGACG301.000.00----------------1.00----------------------------------------------
................................................................................................................................TCCCACTGGACTTGTGGA........................................................................................................181.000.00--------1.00------------------------------------------------------
........................................................................................................................................................................................................................................TTCGGCGTCAGGAGCTAG1811.001.00--------------------------------------1.00------------------------
........................................................................................................................................................................................................................................TTCGGCGTCAGGAGC...1511.001.00-------------------------------------1.00-------------------------
..............................................ATGAAAGTAGAAAAGCAGA.........................................................................................................................................................................................191.000.00----------------------------------1.00----------------------------
...............................TAATGGTATCATCAAATGAAAGTAGAAAAGTAGAAAAGCTGAATAAGAAATCACATGGGTCTTCTTAGCTCACATCATCCGGGATTTACC.................................................................................................................................9011.001.00-------------------------------------------1.00-------------------
...........................................CAAATGAAAGTAGAAAAGTAGA.........................................................................................................................................................................................2211.001.00-----------------------------------------1.00---------------------
...................................................AGTAGAAAAGTAGAAAAGCTGAATAAG............................................................................................................................................................................2711.001.00------------------------------------------1.00--------------------
....................................................................................................................................................................................TTGTTTCTGCCCCTCAC.....................................................1720.500.50-----------------------------------------------0.50---------------
..................................................AAGTAGAAAAGTAGAAAA......................................................................................................................................................................................1890.110.11--------------------------------------------------------------0.11
..................................................AAGTAGAAAAGTAGAAAAACT...................................................................................................................................................................................2190.110.11--------------------0.11------------------------------------------

Antisense strand
GTAAAACATTCTGACATCCTGTTTTCATTTGTAATGGTATCATCAAATGAAAGTAGAAAAGTAGAAAAGCTGAATAAGAAATCACATGGGTCTTCTTAGCTCACATCATCCGGGATTTACCTAGAACCTCCCACTGGACTTGTCTATATGACGGGCGACCACTCAGTAATCACCAACCTTTTGTTTCTGCCCCTCACCAGGTACATGGTGCAGTGGCCGGGAGCACGCATCCTTCGGCGTCAGGAGCTAG
....................................................(((((.((((.....((((((..((((..((....)).)))).))))))..........((((.............)))).....)))).))))).....((....))..........................................................................................
..................................................51......................................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
TAX577589(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM532886(GSM532886)
G850T. (cervix)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
.............................................................................................................................................................................................................TCCCGGCCACTGCACCA............................ 17155.0055.00-10.0010.007.00-6.00-3.003.00--1.002.00-2.00--1.001.001.00--1.00---1.00---1.00--1.00-1.00---1.001.00---1.00------------------
.............................................................................................................................................................................................................CCCGGCCACTGCACCA............................. 1634.004.00-----------------0.67----------------------------0.67---0.330.330.330.330.330.330.330.33-----
..............................................................................................................................................................................................................GGTGCAGTGGCCGGGAC........................... 173.500.00-2.00-0.50---0.50----------------------------------------0.50--------------
.............................................................................................................................................................................................................CCGGCCACTGCACCA.............................. 1551.601.60----------0.20------0.20-0.20-----------------------------0.40--------0.200.200.20--
...............................................................................................................................................................................................................GTGCAGTGGCCGGGAGAA......................... 181.000.00------------------------1.00--------------------------------------
..........................................TCAAATGAAAGTAGAAAATCA........................................................................................................................................................................................... 211.000.00----------------1.00----------------------------------------------
..............................................................................................................................................................................................................GGTGCAGTGGCCGGGAGC.......................... 181.000.00-------1.00-------------------------------------------------------
...............................................................................................................................................................................................................GTGCAGTGGCCGGGAGA.......................... 171.000.00-----------------------1.00---------------------------------------
..................................................................................................................................................................................TTTTGTTTCTGCCCCTTAG..................................................... 191.000.00------------------------------------1.00--------------------------
............................................AAATGAAAGTAGAAAAGTG........................................................................................................................................................................................... 191.000.00---------------------------------------------1.00-----------------
...................................................AGTAGAAAAGTAGAAACTT.................................................................................................................................................................................... 191.000.00-----------------------------1.00---------------------------------
.............................................................................................................................................................................................................TGGTGCAGTGGCCGGGAAT.......................... 191.000.00-----------1.00---------------------------------------------------
.............................................................................................................................................................................................................TGGTGCAGTGGCCGGGACG.......................... 191.000.00---1.00-----------------------------------------------------------
..............................................................................................................................................................................................................TCCCGGCCACTGCACC............................ 1620.500.50------------------0.50--------------------------------------------
..............................................................................................................................................................................................................GGTGCAGTGGCCGGGATTGA........................ 200.500.00-0.50-------------------------------------------------------------
...........................................TTTTCTACTTTCATTTG.............................................................................................................................................................................................. 1780.120.12-------------------------------------------------------------0.12-