uc004arw.2_intron_11_0_chr9_95085786

GACATTTTCTTCTTTTTTTTTTTGGAATATTTTGATAATTATGCTTATTTTTATAGCCAATAAAAAACAAGGTTTATCTTTGAAATAATAAGTTTTCAAGAGCTATTTTTTTTTTTAATTTAGAAACAACCGTTTTTACATTGCTCTCTGGATAAGAATTTAAATAAATTGTTTTGTTTGTTTGTTTGTTTGTTTTTTAGGAAACCCACAGAAAGTTTTTGCATATATCAACATCAGTGTAGCAGAAGCG ..................................................................................................(((((.............(((.(((((((....))))))).))))))))..(((((((....(((((((((......)))))))))....)))))))....................................................... ..................................................................................................99...................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR029128(GSM416757) H520. (cell line)	SRR015448(SRR015448) cytoplasmic small RNAs. (breast)	SRR060169(GSM565979) 5-8F_cytoplasm. (cell line)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)
.ACATTTTCTTCTTTTTTTTTTTTTG................................................................................................................................................................................................................................	25		9.00	0.00	-	-	5.00	2.00	1.00	1.00	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTCGGG.......................................................	26		6.00	0.00	6.00	-	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTG..................................................................................................................................................................................................................................	21	9	5.56	5.56	-	0.11	1.89	1.67	1.22	0.67	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTGGTG................................................................................................................................................................................................................................	23		5.00	0.00	5.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTCACC.......................................................	27		5.00	0.00	3.00	2.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTCACC.......................................................	26		4.00	0.00	1.00	3.00	-	-	-	-	-	-	-	-	-	-
.ACATTTTCTTCTTTTTTTTTTTG..................................................................................................................................................................................................................................	23	1	4.00	4.00	1.00	-	1.00	1.00	1.00	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGTG...............................................................................................................................................................................................................................	23		4.00	0.00	4.00	-	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTTTG..................................................................................................................................................................................................................................	22	4	3.75	3.75	-	-	1.50	1.00	0.75	0.50	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCTC.....................................................	26		3.00	0.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTCG.....................................................	25		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTCG...................................................................................................................................................................................................................................	20		2.00	0.00	-	-	1.00	-	1.00	-	-	-	-	-	-	-
............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCCTT.....................................................	25		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
.ACATTTTCTTCTTTTTTAG......................................................................................................................................................................................................................................	19		2.00	0.00	-	-	-	1.00	-	1.00	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGACAGA............................................................................................................................................................................................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTCGG..................................................................................................................................................................................................................................	21		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTTCG.....................................................	27		2.00	0.00	-	1.00	-	-	-	-	1.00	-	-	-	-	-
.ACATTTTCTTCTTTTTTTTTTTTG.................................................................................................................................................................................................................................	24		2.00	0.00	-	-	1.00	1.00	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCTCG......................................................	28		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTGGTG..................................................................................................................................................................................................................................	21		2.00	0.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTCTCG.....................................................	24		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTCAC.....................................................	27		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCTT.....................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTCTG................................................................................................................................................................................................................................	23		2.00	0.00	-	-	-	-	1.00	1.00	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTGTCT.....................................................	29		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTGGGG................................................................................................................................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TGTTTGTTTGTTTGTTTTTTAGCTGC..............................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGTGC...............................................................................................................................................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGCA...............................................................................................................................................................................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTTTCTG................................................................................................................................................................................................................................	24		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTCTC......................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTGGTG.................................................................................................................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGGGG.......................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTCTGC............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTCTCC.......................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................AATTGTTTTGTTTGTTAC..................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........CTTCTTTTTTTTTTTGGATT..............................................................................................................................................................................................................................	20		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................TATTTTTTTTTTTAATTTCAAA.............................................................................................................................	22		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGGAC..............................................................................................................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........TTCTTTTTTTTTTTGGACATA............................................................................................................................................................................................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCGT.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.......TCTTCTTTTTTTTTTTGGACTC.............................................................................................................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........TTCTTTTTTTTTTTGGGACC.............................................................................................................................................................................................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGGGAG.............................................................................................................................................................................................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......TTCTTCTTTTTTTTTTTGTTGG..............................................................................................................................................................................................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-
........................................................................................................ATTTTTTTTTTTAATTTACATG............................................................................................................................	22		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.....TTTCTTCTTTTTTTTTTTGGGTC..............................................................................................................................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.....TTTCTTCTTTTTTTTTTTGGGG...............................................................................................................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGTTAT.............................................................................................................................................................................................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTTTCTC....................................................	30		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCATG.....................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTCTTA.................................................................................................................................................................................................................................	22		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.ACATTTTCTTCTTTTTTTTTCC...................................................................................................................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTCG....................................................................................................................................................................................................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCG........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTTGG..................................................................................................................................................................................................................................	22		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTCTC......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTCTG..................................................................................................................................................................................................................................	22		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTCTCC...................................................	30		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCTC.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTTTTATCTT...............................................	31		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
......TTCTTCTTTTTTTTTTTGTGC...............................................................................................................................................................................................................................	21		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTAAG................................................................................................................................................................................................................................	23		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCTCC....................................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................TATTTTTTTTTTTAATTCGA...............................................................................................................................	20		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..........TCTTTTTTTTTTTGGACTC.............................................................................................................................................................................................................................	19		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.ACATTTTCTTCTTTTTTTTTTTTAGC...............................................................................................................................................................................................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTCGGC.......................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTTTATCC..................................................	30		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGCG................................................................................................................................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................TATTTTTTTTTTTAATTTAAATG............................................................................................................................	23		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGCTAG.............................................................................................................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTAC.....................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTTTAAG..................................................	31		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
..CATTTTCTTCTTTTTTTTCA....................................................................................................................................................................................................................................	20		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTCCC......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTTCG......................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................................................AGGAAACCCACAGAAAGTTTTGC.............................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCGT.....................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTCTTG.......................................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................ATTGTTTTGTTTGTTTGTTTGTTTGCCAC......................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCCTG....................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTCTTG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................AATTGTTTTGTTTGTTTGTTTGTTCTTG........................................................	28		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
.........TTCTTTTTTTTTTTGGGAGT.............................................................................................................................................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTCG.....................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTCTCC.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.......TCTTCTTTTTTTTTTTGGGATG.............................................................................................................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................TATTTTTTTTTTTAATTTCAG..............................................................................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
.ACATTTTCTTCTTTTTTTTTG....................................................................................................................................................................................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCTCG.....................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCGTC....................................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTCTAT....................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCTCG....................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTGGC....................................................................................................................................................................................................................................	20		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTTCTAG...................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....TTTCTTCTTTTTTTTTTTGGAGTC.............................................................................................................................................................................................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTGTTTGTTTGTTTGTTTTTTATTCG...............................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTGGTC................................................................................................................................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTCTGC.....................................................	28		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTCTCC.........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......TTCTTCTTTTTTTTTTTGTTAT..............................................................................................................................................................................................................................	22		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
.ACATTTTCTTCTTTTTTTTTTTTATG...............................................................................................................................................................................................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTCGAG...........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTAAAG...............................................................................................................................................................................................................................	24		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTTTCAG................................................................................................................................................................................................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.......TCTTCTTTTTTTTTTTGGACT..............................................................................................................................................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTAAGG.................................................................................................................................................................................................................................	23		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTCCTT.........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTCTA.....................................................	28		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGGAC.......................................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
..........TCTTTTTTTTTTTGGAATTA............................................................................................................................................................................................................................	20		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTTTTCCT.................................................	32		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................AATTGTTTTGTTTGTTTGTTTGTC............................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
....TTTTCTTCTTTTTTTTTTTGGGGG..............................................................................................................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTAACG...............................................................................................................................................................................................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
......................................................................................................CTATTTTTTTTTTTAATTTATAG.............................................................................................................................	23		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.............................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTTTTTTAGGAA...............................................	30	2	0.50	0.50	0.50	-	-	-	-	-	-	-	-	-	-	-
..CATTTTCTTCTTTTTTTTTTTGG.................................................................................................................................................................................................................................	23	2	0.50	0.50	-	-	0.50	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTGGTG...............................................................................................................................................................................................................................	24	3	0.33	0.33	0.33	-	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTGGTGAG.............................................................................................................................................................................................................................	26	3	0.33	0.33	-	-	-	0.33	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTGGCC...............................................................................................................................................................................................................................	24	3	0.33	0.33	-	0.33	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTGG.................................................................................................................................................................................................................................	22	3	0.33	0.33	-	-	0.33	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTGGGG...............................................................................................................................................................................................................................	24	3	0.33	0.33	0.33	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................ATTGTTTTGTTTGTTTGTTTGTTTGTTTTT.....................................................	30	3	0.33	0.33	-	0.33	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTTTTTTAG..................................................	32	4	0.25	0.25	-	0.25	-	-	-	-	-	-	-	-	-	-
...ATTTTCTTCTTTTTTTTTTTGTTG...............................................................................................................................................................................................................................	24	9	0.11	5.56	0.11	-	-	-	-	-	-	-	-	-	-	-

GACATTTTCTTCTTTTTTTTTTTGGAATATTTTGATAATTATGCTTATTTTTATAGCCAATAAAAAACAAGGTTTATCTTTGAAATAATAAGTTTTCAAGAGCTATTTTTTTTTTTAATTTAGAAACAACCGTTTTTACATTGCTCTCTGGATAAGAATTTAAATAAATTGTTTTGTTTGTTTGTTTGTTTGTTTTTTAGGAAACCCACAGAAAGTTTTTGCATATATCAACATCAGTGTAGCAGAAGCG
..................................................................................................(((((.............(((.(((((((....))))))).))))))))..(((((((....(((((((((......)))))))))....))))))).......................................................
..................................................................................................99...................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)

SRR029128(GSM416757)
H520. (cell line)

SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)

SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

.ACATTTTCTTCTTTTTTTTTTTTTG................................................................................................................................................................................................................................

9.00

0.00

5.00

2.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTCGGG.......................................................

6.00

0.00

6.00

...ATTTTCTTCTTTTTTTTTTTG..................................................................................................................................................................................................................................

5.56

0.11

1.89

1.67

1.22

0.67

...ATTTTCTTCTTTTTTTTTTGGTG................................................................................................................................................................................................................................

5.00

0.00

5.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTCACC.......................................................

5.00

0.00

3.00

2.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTCACC.......................................................

4.00

0.00

1.00

3.00

.ACATTTTCTTCTTTTTTTTTTTG..................................................................................................................................................................................................................................

4.00

1.00

....TTTTCTTCTTTTTTTTTTTGGTG...............................................................................................................................................................................................................................

4.00

0.00

4.00

..CATTTTCTTCTTTTTTTTTTTG..................................................................................................................................................................................................................................

3.75

1.50

1.00

0.75

0.50

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCTC.....................................................

3.00

0.00

2.00

1.00

............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTCG.....................................................

2.00

0.00

2.00

...ATTTTCTTCTTTTTTTTTCG...................................................................................................................................................................................................................................

2.00

0.00

1.00

............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCCTT.....................................................

2.00

0.00

2.00

.ACATTTTCTTCTTTTTTAG......................................................................................................................................................................................................................................

2.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGACAGA............................................................................................................................................................................................................................

2.00

0.00

2.00

...ATTTTCTTCTTTTTTTTTCGG..................................................................................................................................................................................................................................

2.00

0.00

2.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTTCG.....................................................

2.00

0.00

1.00

.ACATTTTCTTCTTTTTTTTTTTTG.................................................................................................................................................................................................................................

2.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCTCG......................................................

2.00

0.00

2.00

...ATTTTCTTCTTTTTTTTGGTG..................................................................................................................................................................................................................................

2.00

0.00

1.00

.............................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTCTCG.....................................................

2.00

0.00

1.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTCAC.....................................................

2.00

0.00

2.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCTT.....................................................

2.00

0.00

2.00

...ATTTTCTTCTTTTTTTTTTTCTG................................................................................................................................................................................................................................

2.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTGTCT.....................................................

2.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTTGGGG................................................................................................................................................................................................................................

1.00

0.00

1.00

..................................................................................................................................................................................TGTTTGTTTGTTTGTTTTTTAGCTGC..............................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGTGC...............................................................................................................................................................................................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGCA...............................................................................................................................................................................................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTTTTCTG................................................................................................................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTCTC......................................................

1.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTGGTG.................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGGGG.......................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTCTGC............................................................

1.00

0.00

1.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTCTCC.......................................................

1.00

0.00

1.00

......................................................................................................................................................................AATTGTTTTGTTTGTTAC..................................................................

1.00

0.00

1.00

........CTTCTTTTTTTTTTTGGATT..............................................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................................................................TATTTTTTTTTTTAATTTCAAA.............................................................................................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGGAC..............................................................................................................................................................................................................................

1.00

0.00

1.00

.........TTCTTTTTTTTTTTGGACATA............................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCGT.......................................................

1.00

0.00

1.00

.......TCTTCTTTTTTTTTTTGGACTC.............................................................................................................................................................................................................................

1.00

0.00

1.00

.........TTCTTTTTTTTTTTGGGACC.............................................................................................................................................................................................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGGGAG.............................................................................................................................................................................................................................

1.00

0.00

1.00

......TTCTTCTTTTTTTTTTTGTTGG..............................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................ATTTTTTTTTTTAATTTACATG............................................................................................................................

1.00

0.00

1.00

.....TTTCTTCTTTTTTTTTTTGGGTC..............................................................................................................................................................................................................................

1.00

0.00

1.00

.....TTTCTTCTTTTTTTTTTTGGGG...............................................................................................................................................................................................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGTTAT.............................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTTTCTC....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCATG.....................................................

1.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTCTTA.................................................................................................................................................................................................................................

1.00

0.00

1.00

.ACATTTTCTTCTTTTTTTTTCC...................................................................................................................................................................................................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTCG....................................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCG........................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTTTGG..................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTCTC......................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTTCTG..................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTCTCC...................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGCTC.......................................................

1.00

0.00

1.00

............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTTTTATCTT...............................................

1.00

0.00

1.00

......TTCTTCTTTTTTTTTTTGTGC...............................................................................................................................................................................................................................

1.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTTTAAG................................................................................................................................................................................................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCTCC....................................................

1.00

0.00

1.00

.......................................................................................................TATTTTTTTTTTTAATTCGA...............................................................................................................................

1.00

0.00

1.00

..........TCTTTTTTTTTTTGGACTC.............................................................................................................................................................................................................................

1.00

0.00

1.00

.ACATTTTCTTCTTTTTTTTTTTTAGC...............................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTCGGC.......................................................

1.00

0.00

1.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTTTATCC..................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGCG................................................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................................................................TATTTTTTTTTTTAATTTAAATG............................................................................................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGCTAG.............................................................................................................................................................................................................................

1.00

0.00

1.00

............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTAC.....................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTTTAAG..................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTCA....................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTCCC......................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTTCG......................................................

1.00

0.00

1.00

......................................................................................................................................................................................................AGGAAACCCACAGAAAGTTTTGC.............................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCGT.....................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTCTTG.......................................................

1.00

0.00

1.00

.......................................................................................................................................................................ATTGTTTTGTTTGTTTGTTTGTTTGCCAC......................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCCTG....................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTCTTG.........................................................

1.00

0.00

1.00

......................................................................................................................................................................AATTGTTTTGTTTGTTTGTTTGTTCTTG........................................................

1.00

0.00

1.00

.........TTCTTTTTTTTTTTGGGAGT.............................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTCG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTCTCC.........................................................

1.00

0.00

1.00

.......TCTTCTTTTTTTTTTTGGGATG.............................................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................................................................TATTTTTTTTTTTAATTTCAG..............................................................................................................................

1.00

0.00

1.00

.ACATTTTCTTCTTTTTTTTTG....................................................................................................................................................................................................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCTCG.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCGTC....................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTCTAT....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCTCG....................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTGGC....................................................................................................................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTTTGTTTCTAG...................................................

1.00

0.00

1.00

.....TTTCTTCTTTTTTTTTTTGGAGTC.............................................................................................................................................................................................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTGTTTGTTTGTTTGTTTTTTATTCG...............................................

1.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTTGGTC................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTCTGC.....................................................

1.00

0.00

1.00

..........................................................................................................................................................................GTTTTGTTTGTTTGTTTGTCTCC.........................................................

1.00

0.00

1.00

......TTCTTCTTTTTTTTTTTGTTAT..............................................................................................................................................................................................................................

1.00

0.00

1.00

.ACATTTTCTTCTTTTTTTTTTTTATG...............................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTCGAG...........................................................

1.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTTTAAAG...............................................................................................................................................................................................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTTTTCAG................................................................................................................................................................................................................................

1.00

0.00

1.00

.......TCTTCTTTTTTTTTTTGGACT..............................................................................................................................................................................................................................

1.00

0.00

1.00

..CATTTTCTTCTTTTTTTTTAAGG.................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTCCTT.........................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTCTA.....................................................

1.00

0.00

1.00

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGGAC.......................................................

1.00

0.00

1.00

..........TCTTTTTTTTTTTGGAATTA............................................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TGTTTTGTTTGTTTGTTTGTTTGTTTTTTCCT.................................................

1.00

0.00

1.00

......................................................................................................................................................................AATTGTTTTGTTTGTTTGTTTGTC............................................................

1.00

0.00

1.00

....TTTTCTTCTTTTTTTTTTTGGGGG..............................................................................................................................................................................................................................

1.00

0.00

1.00

...ATTTTCTTCTTTTTTTTTTTAACG...............................................................................................................................................................................................................................

1.00

0.00

1.00

......................................................................................................CTATTTTTTTTTTTAATTTATAG.............................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTGTTTGTTTGTTTGTTTGTTTTTTAGGAA...............................................

0.50

..CATTTTCTTCTTTTTTTTTTTGG.................................................................................................................................................................................................................................

0.50

...ATTTTCTTCTTTTTTTTTTTGGTG...............................................................................................................................................................................................................................

0.33

...ATTTTCTTCTTTTTTTTTTTGGTGAG.............................................................................................................................................................................................................................

0.33

...ATTTTCTTCTTTTTTTTTTTGGCC...............................................................................................................................................................................................................................

0.33

...ATTTTCTTCTTTTTTTTTTTGG.................................................................................................................................................................................................................................

0.33

...ATTTTCTTCTTTTTTTTTTTGGGG...............................................................................................................................................................................................................................

0.33

.......................................................................................................................................................................ATTGTTTTGTTTGTTTGTTTGTTTGTTTTT.....................................................

0.33

........................................................................................................................................................................TTGTTTTGTTTGTTTGTTTGTTTGTTTTTTAG..................................................

0.25

...ATTTTCTTCTTTTTTTTTTTGTTG...............................................................................................................................................................................................................................

0.11

5.56

0.11