ID: uc004ars.1_intron_14_0_chr9_95019083_r.5p
GENE: IARS(18)
chr9:95020936-95021185-


(1)
AGO2.ip 		(2)
B-CELL 		(8)
BRAIN 		(14)
BREAST 		(20)
CELL-LINE 		(19)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
HELA 		(10)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GGTACAATGCCTATCGCTTCTTAATCCAGAACGTTCTGAGGCTCCAGAAGGTATGGGCTGTAGGGGGCTGCACATGTACCTGCCGTGTCTCCACAGCGCTCCCTTCACCAAGCTGTGAGGTGGAGCTCTGTGTGAGACTTTAGGGCTGCTGTTCTCTGCTGCCTGATGCTGGGGTAACTTAGAGCCATGGGGAGGCCATACATGCAGGTGCGGAAGGTATCTAGGGTCCGGGCTATGCCAAGACCATGGG
........................................................((.(((((..((.......)).))))).))((((((((((.(((((((((((......)))))).))))).))))).)))))................................................................................................................
..................................................51......................................................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040024(GSM532909)
G613N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...................................................................................................................TGAGGTGGAGCTCTGTAGCT...................................................................................................................208.000.002.001.00------1.00-1.00----------------------1.00-1.00------------------------------1.00--------------------
...................................................................................................................TGAGGTGGAGCTCTGTAG.....................................................................................................................187.000.001.00-----1.00---1.001.00----------1.00----------1.00---------------------1.00-------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTTGCT...................................................................................................................207.000.001.001.002.00----------1.00--------1.00---1.00------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTACCT...................................................................................................................206.000.001.00-----2.00-1.00-1.001.00---------------------------------------------------------------------------
.............................AACGTTCTGAGGCTCCAGAAGGAGG....................................................................................................................................................................................................2515.002.00---------3.00-------------2.00---------------------------------------------------------------
.............................AACGTTCTGAGGCTCCAG...........................................................................................................................................................................................................1815.005.00----5.00----------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGCG...................................................................................................................204.000.00------1.00----2.001.00--------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTATCT...................................................................................................................204.000.00-------------1.00-1.00----------1.001.00-----------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGCTC..................................................................................................................214.000.00-2.00--------1.00---------------------------------------------1.00------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGAG...................................................................................................................203.000.00------------1.00-------1.00---------------1.00--------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGG.....................................................................................................................183.000.001.00--1.00---------------------------------------------------------------1.00-------------------
................................................................................................................CTGTGAGGTGGAGCTAAT........................................................................................................................183.000.00-----------------------------2.00---------------1.00-----------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGCA...................................................................................................................202.000.00--1.00------------1.00-----------------------------------------------------------------------
................................................................................................................CTGTGAGGTGGAGCTCTGTGTGAGACC...............................................................................................................2712.001.00-------2.00-------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGCCT...................................................................................................................202.000.001.00-----------------------------1.00--------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGC....................................................................................................................192.000.00---------------1.00-----------------------------------1.00-----------------------------------
...............................CGTTCTGAGGCTCCAGAAG........................................................................................................................................................................................................1912.002.00-------------------------------2.00-------------------------------------------------------
...............................................................................................................................................................................................................GTGCGGAAGGTATCTAGGGTCCGGGCTATG.............3012.002.00----------------------------------------2.00----------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGCGC..................................................................................................................212.000.001.001.00-------------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGTT...................................................................................................................202.000.00-1.00----------------------------------------------1.00--------------------------------------
......................................................................................................................GGTGGAGCTCTGTGTGAGACTT..............................................................................................................2212.002.00----------------------------------------------------------1.00-1.00--------------------------
.................................TTCTGAGGCTCCAGAAGG.......................................................................................................................................................................................................1812.002.00------------------------2.00--------------------------------------------------------------
..............................ACGTTCTGAGGCTCCAGA..........................................................................................................................................................................................................1812.002.00-----1.00-------------------------------1.00-------------------------------------------------
................................................................................................................CTGTGAGGTGGAGCTCTGTGTGAGACCT..............................................................................................................2812.001.00-------2.00-------------------------------------------------------------------------------
.............................AACGTTCTGAGGCTCCAGAAGG.......................................................................................................................................................................................................2212.002.00---------------------2.00-----------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGAT...................................................................................................................202.000.00------1.00-----1.00--------------------------------------------------------------------------
.................................TTCTGAGGCTCCAGAAGGAGG....................................................................................................................................................................................................2111.002.00----------------------------------------------------------------1.00----------------------
...................................................................................................................TGAGGTGGAGCTCTGCATC....................................................................................................................191.000.00--------------1.00------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTTGGT...................................................................................................................201.000.00--------------1.00------------------------------------------------------------------------
..................................................................................................................GTGAGGTGGAGCTCTGTGTGAG..................................................................................................................2211.001.00------------------------------------------------------1.00--------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGTTG..................................................................................................................211.000.00------------------------------------1.00--------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGCAC..................................................................................................................211.000.00-----------------1.00---------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTATT....................................................................................................................191.000.00---1.00-----------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTTGCG...................................................................................................................201.000.00---1.00-----------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAACT...................................................................................................................201.000.001.00--------------------------------------------------------------------------------------
................................................AGGTATGGGCTGTAGGGGGG......................................................................................................................................................................................201.000.00-------------------------1.00-------------------------------------------------------------
...............................CGTTCTGAGGCTCCAGAAGTAGG....................................................................................................................................................................................................2311.002.00--------------------------------1.00------------------------------------------------------
................................................AGGTATGGGCTGTAGGAGGG......................................................................................................................................................................................201.000.00-------------------------1.00-------------------------------------------------------------
....................................................................................................................GAGGTGGAGCTCTGTGTGAGA.................................................................................................................2111.001.00-------------------1.00-------------------------------------------------------------------
..................................................................................................................GTGAGGTGGAGCTCTGTGTGAGAC................................................................................................................2411.001.00--------------------------------------------------1.00------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTATA....................................................................................................................191.000.001.00--------------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGAA...................................................................................................................201.000.00--1.00------------------------------------------------------------------------------------
.............................AACGTTCTGAGGCTCCAGAAGGAG.....................................................................................................................................................................................................2411.002.00------------------------------------------------------------------------1.00--------------
..........................CAGAACGTTCTGAGGCTCC.............................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00---------------
...................................................................................................................TGAGGTGGAGCTCTGTGGTA...................................................................................................................201.000.00----------------------------------------------1.00----------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTTAA....................................................................................................................191.000.00---1.00-----------------------------------------------------------------------------------
......................................AGGCTCCAGAAGGTATGGGCTGTAGGG.........................................................................................................................................................................................2711.001.00---------1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................GGGGTAACTTAGAGCCATGGGGAGGCCA....................................................2811.001.00-------------------------------------------------------------------------1.00-------------
..................................................GTATGGGCTGTAGGGA........................................................................................................................................................................................161.000.00----------------------------------1.00----------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTACAG...................................................................................................................201.000.00------------1.00--------------------------------------------------------------------------
..................TCTTAATCCAGAACGTTCTGAGGCTCC.............................................................................................................................................................................................................2711.001.00----------------1.00----------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTTGG..................................................................................................................211.000.00---------------------------------------1.00-----------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGGTGC....................................................................................................................191.000.00--------------------------------------------------------------1.00------------------------
...................................................................................................................................GTGAGACTTTAGGGCTGC.....................................................................................................1811.001.00-------------------------------------------1.00-------------------------------------------
...ACAATGCCTATCGCTTCTTAAT.................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------1.00---------
...................................................................................................................TGAGGTGGAGCTCTGTGGCT...................................................................................................................201.000.00--------------------------------1.00------------------------------------------------------
....................................................................................................................GAGGTGGAGCTCTGTGCA....................................................................................................................181.000.00--------------------------------------------------------------------------1.00------------
...................................................................................................................TGAGGTGGAGCTCTGTGGCG...................................................................................................................201.000.00-1.00-------------------------------------------------------------------------------------
.........................................................................................................................GGAGCTCTGTGTGAGACTTT.............................................................................................................2011.001.00-------------------------------------------------1.00-------------------------------------
.............................AACGTTCTGAGGCTCCAGAAGGAGGA...................................................................................................................................................................................................2611.002.00-------------------------------------------------------------1.00-------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTAGTT.................................................................................................................221.000.00------------------1.00--------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTGGTT.................................................................................................................221.000.00--------------------1.00------------------------------------------------------------------
...............................................................................................................GCTGTGAGGTGGAGCGA..........................................................................................................................171.000.00----------------------------------1.00----------------------------------------------------
...........................................CCAGAAGGTATGGGCTGTAGG..........................................................................................................................................................................................2111.001.00---------------------------------------------------------------1.00-----------------------
.....................................................................................................................AGGTGGAGCTCTGTGTGGGTC................................................................................................................211.000.00----------------1.00----------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTTG.....................................................................................................................181.000.00--------1.00------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGTG...................................................................................................................201.000.00----------1.00----------------------------------------------------------------------------
................................................................................................................CTGTGAGGTGGAGCTCTGTGTGAGAC................................................................................................................2611.001.00----------------1.00----------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGT....................................................................................................................191.000.00--1.00------------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGTT...................................................................................................................201.000.00---------------------------------------1.00-----------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTGGTAG................................................................................................................231.000.00--------1.00------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGCTGT..................................................................................................................211.000.00--1.00------------------------------------------------------------------------------------
..................TCTTAATCCAGAACGTTCTGAGGCTCCAGAAGG.......................................................................................................................................................................................................3311.001.00-----1.00---------------------------------------------------------------------------------
......................................AGGCTCCAGAAGGTATGGG.................................................................................................................................................................................................1911.001.00------------------------------1.00--------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTGGGC.................................................................................................................221.000.00--------------1.00------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGCCG..................................................................................................................211.000.00-----------------1.00---------------------------------------------------------------------
..............................ACGTTCTGAGGCTCCAGAAGGAGGA...................................................................................................................................................................................................2511.001.00-------------------------------------1.00-------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGA....................................................................................................................191.000.00------------------1.00--------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGTCT..................................................................................................................211.000.00---------------------------1.00-----------------------------------------------------------
.....................................................TGGGCTGTAGGGGGCTA....................................................................................................................................................................................171.000.00---------------------------------------------------------1.00-----------------------------
...........................AGAACGTTCTGAGGCTCCAGA..........................................................................................................................................................................................................2111.001.00-----1.00---------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGAGG..................................................................................................................211.000.00------------------1.00--------------------------------------------------------------------
.......................ATCCAGAACGTTCTGAGGCTCCAGAA.........................................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00---------------------------------
...........................................CCAGAAGGTATGGGCTGTAG...........................................................................................................................................................................................2011.001.00-----1.00---------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGGGAG..................................................................................................................211.000.00--------1.00------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTGCGT.................................................................................................................221.000.00-----------------1.00---------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTTTC....................................................................................................................191.000.00----------------------------------------------------------------------------1.00----------
.................................TTCTGAGGCTCCAGAAGGTATGGGCT...............................................................................................................................................................................................2611.001.00-----------------------------------------------1.00---------------------------------------
...................................CTGAGGCTCCAGAAGGTATGGG.................................................................................................................................................................................................2211.001.00-----1.00---------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTAGT....................................................................................................................191.000.00---1.00-----------------------------------------------------------------------------------
.......................ATCCAGAACGTTCTGAGGCTCCA............................................................................................................................................................................................................2311.001.00---------------------------------------------------------------------------1.00-----------
...................................................................................................................TGAGGTGGAGCTCTGTAAA....................................................................................................................191.000.00-------------1.00-------------------------------------------------------------------------
...........................AGAACGTTCTGAGGCTCCAGAAGG.......................................................................................................................................................................................................2411.001.00---------1.00-----------------------------------------------------------------------------
.......................................................GGCTGTAGGGGGCTGTGT.................................................................................................................................................................................181.000.00----------------------------------------------------------------------1.00----------------
.....................................................TGGGCTGTAGGGGGCTTGCA.................................................................................................................................................................................201.000.00-----------------------------------1.00---------------------------------------------------
...........................AGAACGTTCTGAGGCTCCAGAAGGAGG....................................................................................................................................................................................................2711.001.00------------------------------------------------------------------------------1.00--------
...................................................................................................................TGAGGTGGAGCTCTGTGTTAG..................................................................................................................211.000.00----------------------------1.00----------------------------------------------------------
................................................................................................................................TGTGTGAGACTTTAGGGCTGCTGTTCT...............................................................................................2711.001.00--------------------------------------------------------------------1.00------------------
............................................................................................................................................TAGGGCTGCTGTTCTCTGCTGC........................................................................................2211.001.00---------------------------------------------------------------------1.00-----------------
..............................ACGTTCTGAGGCTCCAGAAGG.......................................................................................................................................................................................................2111.001.00-----------------------------------------1.00---------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTACTG...................................................................................................................201.000.001.00--------------------------------------------------------------------------------------
...................................................................................................................TGAGGTGGAGCTCTGTGTTAGT.................................................................................................................221.000.00----------------------------1.00----------------------------------------------------------
......................................................................................................................................................................................................................AGGTATCTAGGGTCCGGGCTACGCC...........251.000.00-------1.00-------------------------------------------------------------------------------
................................GTTCTGAGGCTCCAGAAG........................................................................................................................................................................................................1811.001.00--------------------------------------------1.00------------------------------------------
......ATGCCTATCGCTTCTTAGTCG...............................................................................................................................................................................................................................211.000.00--------------------------------------------------------------------------------1.00------
.........................CCAGAACGTTCTGAGGCTCC.............................................................................................................................................................................................................2011.001.00------------------------------------------1.00--------------------------------------------
.........................................CTCCAGAAGGTATGGG.................................................................................................................................................................................................1630.670.67---------------------------------------------------------------------------------0.67-----
.............................................................................................................................................AGGGCTGCTGTTCTCTG............................................................................................1740.500.50----------------------------------------------------------------------------------0.50----
...............................................................................................................................................................TGCCTGATGCTGGGGT...........................................................................1650.200.20-------------------------------------------------------------------------------------0.20-

Antisense strand
GGTACAATGCCTATCGCTTCTTAATCCAGAACGTTCTGAGGCTCCAGAAGGTATGGGCTGTAGGGGGCTGCACATGTACCTGCCGTGTCTCCACAGCGCTCCCTTCACCAAGCTGTGAGGTGGAGCTCTGTGTGAGACTTTAGGGCTGCTGTTCTCTGCTGCCTGATGCTGGGGTAACTTAGAGCCATGGGGAGGCCATACATGCAGGTGCGGAAGGTATCTAGGGTCCGGGCTATGCCAAGACCATGGG
........................................................((.(((((..((.......)).))))).))((((((((((.(((((((((((......)))))).))))).))))).)))))................................................................................................................
..................................................51......................................................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040024(GSM532909)
G613N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
......................................................................................AGGGAGCGCTGTGGAGAC.................................................................................................................................................. 1822.502.50--------------------------------------2.00--------------------------------------------0.50---
......................................................................................GTCTCCACAGCGCTCCGC.................................................................................................................................................. 181.000.00-------------------1.00-------------------------------------------------------------------
.............................................................................................................................................................................GTAACTTAGAGCCATGTCTG......................................................... 201.000.00-----------------------------------------------------------------1.00---------------------
.............................................................................................................................................................GCTGCCTGATGCTGGGGCT.......................................................................... 191.000.00-----------------------------------------------------------1.00---------------------------
..................................................................................CCGTGTCTCCACAGCGCTA..................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------1.00-------
.....................................................................................AGGGAGCGCTGTGGAGACA.................................................................................................................................................. 1921.001.00----------------------------------------------------1.00----------------------------------
...................................................................................................................ACACAGAGCTCCACCTCA..................................................................................................................... 1820.500.50-----------------------------------------0.50---------------------------------------------
....................................................................................................................................................CAGGCAGCAGAGAACAG..................................................................................... 1740.250.25------------------------------------------------------------------------------------0.25--
...................................................................................................................................................AGGCAGCAGAGAACAGC...................................................................................... 1760.170.17--------------------------------------------------------------------------------------0.17