ID: uc004aog.1_intron_6_0_chr9_88455178_f
GENE: (7)
chr9:88455128-88455714+


(1)
B-CELL
(2)
BRAIN
(4)
BREAST
(13)
CELL-LINE
(3)
HEART
(2)
HELA
(4)
LIVER
(1)
OTHER
(5)
SKIN
(1)
TESTES
(1)
UTERUS
(2)
XRN.ip

Sense strand
GATAACAGTGATGATGAAGAATCAGAAGGCCAAGAGAAATCTGGAACTAGGTATGTTAAATATACACTGATTTAATAAATATTTAGAATTATATGCTGCAATAAATATAAAAGTGTAGGTTTTTTCCATTGGAGTATATCTTTTATGTTTAATAGAAGAGTAGGTAACTTTTGCTAAATGTACTGTCATCTAATGTGTTATGAAAATAGTATTTGAACACAAGTCATCAGTCTTATAACTGAAAAATAATTTTGCTTTTAGAGCTTTTATAGTAATGAGATTCTAATTTTCAGAGGGTTTTTTTTTTTTTTTTGGATTTCCTTATTCTGCTGCCACATTGGCAACAAACATGACTTTTCTGCTGGATTCAACATGGGTGAGGGGGGCATCCTTCTATTTTGAGCAATATTAGTAACATTCTGTTTTTATATGTAATTAATAATTTTTTTAACATTACTGTCACTTTTTGGGGAAACTAATTTGAGGGCAGATTAGAAAACACTAACAAATAAGTTAACTTTCTGATTTTTTTTTAAGATGTAGAAGTCGTTCATGGATTCAGAAGCCAGACTCTGTTCCCTTGTTGA
.....................................................((((((((........))))))))........(((..(((((((.(((...((((....)))).((......)).))).)))))))..)))...........................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577453(Rovira)
total RNA. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCTC....................................................................................................................................................................................................................................................................................2067.000.0061.006.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCTC.................................................................................................................................................................................................................................................................................2336.000.0035.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCTC...............................................................................................................................................................................................................................................................................2534.000.0031.003.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCTC................................................................................................................................................................................................................................................................................2434.000.0033.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTCCC...................................................................................................................................................................................................................................................................................2125.000.0024.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCCC.................................................................................................................................................................................................................................................................................2317.000.0017.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCCC..................................................................................................................................................................................................................................................................................2215.000.0015.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCCC...............................................................................................................................................................................................................................................................................2514.000.0014.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCAGG..............................................................................................................................................................................................................................................................................2611.000.008.003.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTAGG................................................................................................................................................................................................................................................................................2410.000.008.002.00----------------------------------------
........................................................TAAATATACACTGATAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................199.000.00--6.00----1.00----1.00---------------1.00-------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTAGG...............................................................................................................................................................................................................................................................................257.000.005.002.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCTCT................................................................................................................................................................................................................................................................................247.000.005.002.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCTCT...................................................................................................................................................................................................................................................................................216.000.005.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCCTC...............................................................................................................................................................................................................................................................................255.000.005.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCAGG...............................................................................................................................................................................................................................................................................254.000.003.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCTCC...............................................................................................................................................................................................................................................................................254.000.004.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTCCTC..................................................................................................................................................................................................................................................................................224.000.004.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCCCC...................................................................................................................................................................................................................................................................................214.000.004.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTCTCC..................................................................................................................................................................................................................................................................................224.000.004.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCAGG................................................................................................................................................................................................................................................................................244.000.004.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCTCT.................................................................................................................................................................................................................................................................................234.000.003.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTCCCC..................................................................................................................................................................................................................................................................................223.000.003.00-----------------------------------------
.................................GAGAAATCTGGAACTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1723.003.00-----1.00---1.00-------------------------0.50----0.50-
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCTCT..............................................................................................................................................................................................................................................................................263.000.003.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCTCC..............................................................................................................................................................................................................................................................................262.000.001.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCGGA...............................................................................................................................................................................................................................................................................252.000.00-2.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCCCC................................................................................................................................................................................................................................................................................242.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCTTT................................................................................................................................................................................................................................................................................242.000.00-2.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTAAGG...............................................................................................................................................................................................................................................................................252.000.001.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTCCCT..................................................................................................................................................................................................................................................................................222.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCA.................................................................................................................................................................................................................................................................................232.000.00-2.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTCAC.....................................................................................................................................................................................................................................................................................192.000.001.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCAAG...............................................................................................................................................................................................................................................................................252.000.00-2.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCCCC..............................................................................................................................................................................................................................................................................262.000.002.00-----------------------------------------
................................................................................................................................................................................................................................................................................................TTCAGAGGGTTTTTTTTTTTTTTCG..................................................................................................................................................................................................................................................................................252.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTAGG..................................................................................................................................................................................................................................................................................222.000.001.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCCCT.................................................................................................................................................................................................................................................................................232.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCTCC.................................................................................................................................................................................................................................................................................232.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCTCT...............................................................................................................................................................................................................................................................................252.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCTTT...............................................................................................................................................................................................................................................................................252.000.002.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCCCT...................................................................................................................................................................................................................................................................................212.000.001.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCAGG...................................................................................................................................................................................................................................................................................212.000.002.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGTTTT.............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
................................................................................................................................................................................................................................................................................................TTCAGAGGGTTTTTTTTTTTTTTTA..................................................................................................................................................................................................................................................................................251.000.00-1.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGGATTTCCATA.......................................................................................................................................................................................................................................................................271.000.00---1.00--------------------------------------
............................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGGATTTCCTTT.......................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGTATC.............................................................................................................................................................................................................................................................................251.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTGGAT................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCGGA.................................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCCAGACTCTGTTCCC.......2011.001.00---------------1.00--------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTAGC..................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
........................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTTTTTTGGACCGG...........................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCAG................................................................................................................................................................................................................................................................................241.000.00-1.00----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAACTTG......................................................................................191.000.00------1.00-----------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTATG..................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................GGTTTTTTTTTTTTTTTTGGGGT.............................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTGC................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
...........TGATGAAGAATCAGAAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------1.00---------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCCG..................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAACCG.......................................................................................181.000.00------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTGGATTTCCAGTA......................................................................................................................................................................................................................................................................261.000.00-1.00----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTTTTTTGGATTTCC..........................................................................................................................................................................................................................................................................3111.001.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCTGG...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTGGC................................................................................................................................................................................................................................................................................241.000.00-1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................GGGTTTTTTTTTTTTTTTTGGGTC.............................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
................................................................................................................................................................................................................................................................................................TTCAGAGGGTTTTTTTTTTTTTTCGG.................................................................................................................................................................................................................................................................................261.000.00-1.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTGGATTTCTAGC.......................................................................................................................................................................................................................................................................261.000.00-1.00----------------------------------------
.............................................................................................................................................................................................................................................................................................ATTTTCAGAGGGTTTTTTTTTTTTTTCGG.................................................................................................................................................................................................................................................................................291.000.00-1.00----------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................GGCATCCTTCTATTTTCTG........................................................................................................................................................................................191.000.00--------------------------------1.00---------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCAC..................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTGGATTTCGG.........................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCTCC...................................................................................................................................................................................................................................................................................211.000.001.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................................................ACTTTTCTGCTGGATTCTGGG......................................................................................................................................................................................................................211.000.00-1.00----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTTTCGG..................................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTTTTTCT.................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAATTTT......................................................................................191.000.00-----1.00------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGGGCC.............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
..............................................................................................................................................................................................................................................................................................TTTTCAGAGGGTTTTTTTTTTTTTTC...................................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTAGGA..................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAACTTT......................................................................................191.000.00---------------------------1.00--------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCCAG...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGTT...............................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTGGG.................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCTAG..............................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCTT.................................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
.......................................................................................................................................................................................................................................................................................................GGTTTTTTTTTTTTTTTTGGGTAT............................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTTTC.................................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGGG...............................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................TTTCAGAGGGTTTTTTTTTTTTTTTTTTTC..............................................................................................................................................................................................................................................................................301.000.00-1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCAGATTAGAACATG......................................................................................201.000.00--------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTGGG................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCCCT...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
.........................AAGGCCAAGAGAAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------1.00-----------------
............................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGGATTTCCGG........................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCTA.................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................ATTTTCAGAGGGTTTTTTTTTTCTGG....................................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
.......................AGAAGGCCAAGAGAAATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.001.00--------------------------------------0.500.50--
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTACGG................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................ATTTTCAGAGGGTTTTTTCTG.........................................................................................................................................................................................................................................................................................211.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTGTG...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTCATG..................................................................................................................................................................................................................................................................................221.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCCGG...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTGGATTTCCTTATCGC...................................................................................................................................................................................................................................................................281.000.00---1.00--------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTCCAG................................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTGGATTTCGG.........................................................................................................................................................................................................................................................................211.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCCTC.................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCAAG..............................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCCT..................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTCTGG................................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGGATTTCTGC........................................................................................................................................................................................................................................................................261.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTAAGA..............................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTGGATCGAG..........................................................................................................................................................................................................................................................................201.000.00-1.00----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTAGCT................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTGTTT...................................................................................................................................................................................................................................................................................221.000.00---1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTATTT..................................................................................................................................................................................................................................................................................221.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCCTT.................................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
................................................................................................................................................................................................................................................................................................TTCAGAGGGTTTTTTTTTTTTTTCTG.................................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTATG.................................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTTTAGC...............................................................................................................................................................................................................................................................................271.000.001.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTGGATTTCCTCGTG.....................................................................................................................................................................................................................................................................271.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTCTA....................................................................................................................................................................................................................................................................................201.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTTTTTTCTC...............................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTTTTTATA................................................................................................................................................................................................................................................................................251.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTCTCT....................................................................................................................................................................................................................................................................................201.000.001.00-----------------------------------------
.......................AGAAGGCCAAGAGAAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------1.00----------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCTTT.................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGATTCAGAAGCTTTG.................191.000.00----------------1.00-------------------------
..................................................................................................................................................................................................................................................................................................................................................................TTTTCTGCTGGATTCAACGG.....................................................................................................................................................................................................................201.000.00-----1.00------------------------------------
..............................................................................................................................................................................................................................................................................................TTTTCAGAGGGTTTTTTTTTTTCT.....................................................................................................................................................................................................................................................................................241.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................ATTCTGCTGCCACATTTCTG....................................................................................................................................................................................................................................................201.000.00-------1.00----------------------------------
..............................................................................................................................................................................................................................................................................................TTTTCAGAGGGTTTTTTTTTTTTTTTTTCGG..............................................................................................................................................................................................................................................................................311.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCCG................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................GAGGGTTTTTTTTTTTTACT...................................................................................................................................................................................................................................................................................201.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTCCTC................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTAGTT.................................................................................................................................................................................................................................................................................231.000.00-1.00----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTCCAC....................................................................................................................................................................................................................................................................................211.000.001.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................ATTTTCAGAGGGTTTTTTTTTTTTTTGGG.................................................................................................................................................................................................................................................................................291.000.001.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................GAGGGTTTTTTTTTTTTTTCCC.................................................................................................................................................................................................................................................................................221.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTCCCT..............................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
.....................................................................................................................................................TAATAGAAGAGTAGGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------1.00-----------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTAAGT..............................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAACT........................................................................................171.000.00------1.00-----------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTACCC...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAACTT.......................................................................................181.000.00------------------1.00-----------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTCAGG.................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGGATTTTTCG........................................................................................................................................................................................................................................................................261.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTCG.................................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................CAGAGGGTTTTTTTTTTTTTTTTCAGG..............................................................................................................................................................................................................................................................................271.000.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAGATTAGAACACG......................................................................................191.000.00-----------------------------1.00------------
...........TGATGAAGAATCAGAAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------1.00---------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTAAGT...............................................................................................................................................................................................................................................................................251.000.001.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................GGTTTTTTTTTTTTTTTTGTGCA.............................................................................................................................................................................................................................................................................231.000.001.00-----------------------------------------
................AAGAATCAGAAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.670.67-----------0.67------------------------------
......AGTGATGATGAAGAATCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50----------------------------------0.50-------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAAGTCGTTCATGGATTCAGAAGCCAGA.................3320.500.50------------------------------------0.50-----
...AACAGTGATGATGAAGAATCAGAAGGCCAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3320.500.50---------0.50--------------------------------
..TAACAGTGATGATGAAGAATCAGAAGGCCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3320.500.50-----------------------------------------0.50
...............GAAGAATCAGAAGGCCAAGAGAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.500.50-----------0.50------------------------------
....ACAGTGATGATGAAGAATCAGAAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.50----------0.50-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTTTTTAAGATGTAGAAGTCGTTCAT.................................3120.500.50-------------------------------------0.50----
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGTCGTTCATGGATTCAGAAGCCAGAC................3120.500.50----------0.50-------------------------------
.....................................................................................................TAAATATAAAAGTGTAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50-----0.50------------------------------------
...AACAGTGATGATGAAGAATCAGAAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.500.50----------0.50-------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTGG................................................................................................................................................................................................................................................................................2450.400.40-0.40----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGATTCAGAAGC.....................1830.330.33-----0.33------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTGGG...............................................................................................................................................................................................................................................................................2550.200.400.20-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGGGTTTTTTTTTTTTTTTTGGGAC.............................................................................................................................................................................................................................................................................2750.200.40-0.20----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGGA...............................................................................................................................................................................................................................................................................2360.170.170.17-----------------------------------------
.....................................................................................................................................................................................................................................................................................................AGGGTTTTTTTTTTTTTTTTGGAC..............................................................................................................................................................................................................................................................................2460.170.170.17-----------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTTCTGG...............................................................................................................................................................................................................................................................................2770.140.140.14-----------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTTC..................................................................................................................................................................................................................................................................................2470.140.14-0.14----------------------------------------
.................................................................................................................................................................................................................................................................................................TCAGAGGGTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................2370.140.140.14-----------------------------------------

Antisense strand
GATAACAGTGATGATGAAGAATCAGAAGGCCAAGAGAAATCTGGAACTAGGTATGTTAAATATACACTGATTTAATAAATATTTAGAATTATATGCTGCAATAAATATAAAAGTGTAGGTTTTTTCCATTGGAGTATATCTTTTATGTTTAATAGAAGAGTAGGTAACTTTTGCTAAATGTACTGTCATCTAATGTGTTATGAAAATAGTATTTGAACACAAGTCATCAGTCTTATAACTGAAAAATAATTTTGCTTTTAGAGCTTTTATAGTAATGAGATTCTAATTTTCAGAGGGTTTTTTTTTTTTTTTTGGATTTCCTTATTCTGCTGCCACATTGGCAACAAACATGACTTTTCTGCTGGATTCAACATGGGTGAGGGGGGCATCCTTCTATTTTGAGCAATATTAGTAACATTCTGTTTTTATATGTAATTAATAATTTTTTTAACATTACTGTCACTTTTTGGGGAAACTAATTTGAGGGCAGATTAGAAAACACTAACAAATAAGTTAACTTTCTGATTTTTTTTTAAGATGTAGAAGTCGTTCATGGATTCAGAAGCCAGACTCTGTTCCCTTGTTGA
.....................................................((((((((........))))))))........(((..(((((((.(((...((((....)))).((......)).))).)))))))..)))...........................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577453(Rovira)
total RNA. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
....................................................................................................ATAAATATAAAAGTGTCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 204.000.00---1.003.00-------------------------------------
...................................................................................................AATAAATATAAAAGTGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 202.000.00----1.00----------------------------1.00--------
.................................................................................................................................................................................................TGTGTTATGAAAATAGTAG....................................................................................................................................................................................................................................................................................................................................................................................... 192.000.00--1.00----1.00----------------------------------
.........................................................................................................TATAAAAGTGTAGGTTTTATAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 221.000.00---1.00--------------------------------------
.................................................................ACTGATTTAATAAATATAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00---1.00--------------------------------------
...............................................................................................................................................................................................................................TCATCAGTCTTATAATGAC......................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------1.00----------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATATGTAATTAATAAGTAA............................................................................................................................................. 231.000.00----------------------1.00-------------------
.................................................................................................................................................................................................................................................................................................................TTTTTTTTGGATTTCCTTAGTGA................................................................................................................................................................................................................................................................... 231.000.00-----------------1.00------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATTTTTTTTTAACCG................................................ 191.000.00-------------------------1.00----------------
............................................................................................................................................................................................................................................................................................................AATCCAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................. 1801.001.00---------------------1.00--------------------
...................................................................TGATTTAATAAATATTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00--1.00---------------------------------------
....................................................................................AGAATTATATGCTGCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00---------------------------------
...............................................................................................................................................................................................................................TCATCAGTCTTATAATG........................................................................................................................................................................................................................................................................................................................................................... 171.000.00-------------------1.00----------------------
.............................................................................................................AAAGTGTAGGTTTTTACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00---------------------------------
.........................................................................................................TATAAAAGTGTAGGTTTTTATTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00---1.00--------------------------------------
.........................................................................................................................................................................................................................CACAAGTCATCAGTCTGAG............................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------1.00------------------