| (2) BREAST | (12) CELL-LINE | (1) CERVIX | (3) HELA | (4) OTHER |
| CAAACCTAGGTATAGCTGTCTCAAACCTTTTGATTTTCTCATTTTACCATCTGATTATGTGTAGTGTTTCAATTTCGACCATGTAAGATGCTGAAGAGTGAAAAATCTAAAGGGTGTGCCTGTCTGTGCATTGTAGAGAATTACAGAAGCTGTATTCAAATATACTGAATTATCTAAATTTTTTTGTTTTTTGTTTTCAGGTAATAGATGCATATTATTTCTTTTATTTAAAAGAAATGAATGTGACTAG ......................................................................................(((((...(((..((....))....(((....))).)))..))))).....(((.(((((...))))))))............................................................................................. ...............................................................................80..............................................................................160........................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR029128(GSM416757) H520. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR390724(GSM850203) small rna immunoprecipitated. (cell line) | SRR189784 | SRR390725(GSM850204) small rna immunoprecipitated. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343337 | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR343336 | SRR040039(GSM532924) G531T. (cervix) | SRR029130(GSM416759) DLD2. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................GAATTACAGAAGCTGAATC.............................................................................................. | 19 | 200.00 | 0.00 | 200.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGATC............................................................................................... | 18 | 94.00 | 0.00 | 94.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................GTGCATTGTAGAGAATTACAGAAGCTGTATTCAAATATACTGAATTATCTAAATTTTTTTGTTTTTTGTTTTCAG.................................................. | 75 | 1 | 13.00 | 13.00 | - | - | 13.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................GAATTACAGAAGCTGA................................................................................................. | 16 | 13.00 | 0.00 | - | 13.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGAA................................................................................................ | 17 | 4.00 | 0.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................GCATTGTAGAGAATTACAGAAGCTGTATTCAAATATACTGAATTATCTAAATTTTTTTGTTTTTTGTTTTCAG.................................................. | 73 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................CATATTATTTCTTTTATTTAAAAG................ | 24 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | 1.00 | - | - | - |
| ....................................................................................AAGATGCTGAAGAGTACGC................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGGATC.............................................................................................. | 19 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................TGTAGTGTTTCAATTTCATG........................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................AGAATTACAGAAGCTGA................................................................................................. | 17 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTTGTTTTTTGTTTTCACTGA............................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................AAGGGTGTGCCTGTCTCTTT......................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..................................................................................................................................................................................TTTTTTTGTTTTTTGTCGGC.................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGTATC.............................................................................................. | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AATTTTTTTGTTTTTTGGACT..................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................GTAGTGTTTCAATTTTCTG........................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGATA............................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................TGTGCATTGTAGAGAATTACAGAAGCTGTATTCAAATATACTGAATTATCTAAATTTTTTTGTTTTTTGTTTTCAG.................................................. | 76 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................GTGCATTGTAGAGAATTG........................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................AAATTTTTTTGTTTTTTGTTTTTC................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| .................................................................................................................................................................................ATTTTTTTGTTTTTTGGCTC..................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTTGTTTTTTGTTAGTG................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................TGTAGTGTTTCAATTTTCTG........................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................TTATTTCTTTTATTTAAAAG................ | 20 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| CAAACCTAGGTATAGCTGTCTCAAACCTTTTGATTTTCTCATTTTACCATCTGATTATGTGTAGTGTTTCAATTTCGACCATGTAAGATGCTGAAGAGTGAAAAATCTAAAGGGTGTGCCTGTCTGTGCATTGTAGAGAATTACAGAAGCTGTATTCAAATATACTGAATTATCTAAATTTTTTTGTTTTTTGTTTTCAGGTAATAGATGCATATTATTTCTTTTATTTAAAAGAAATGAATGTGACTAG ......................................................................................(((((...(((..((....))....(((....))).)))..))))).....(((.(((((...))))))))............................................................................................. ...............................................................................80..............................................................................160........................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR029128(GSM416757) H520. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR390724(GSM850203) small rna immunoprecipitated. (cell line) | SRR189784 | SRR390725(GSM850204) small rna immunoprecipitated. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343337 | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR343336 | SRR040039(GSM532924) G531T. (cervix) | SRR029130(GSM416759) DLD2. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................GAATTACAGAAGCTGCATC.............................................................................................. | 19 | 20.00 | 0.00 | 20.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGCT................................................................................................ | 17 | 13.00 | 0.00 | - | 3.00 | - | 5.00 | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................GAATTACAGAAGCTGCTA............................................................................................... | 18 | 7.00 | 0.00 | - | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .........................................................................................................................................................................................................................TTTTAAATAAAAGAAA................. | 16 | 0 | 7.00 | 7.00 | - | - | - | - | - | - | 4.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................GAATTACAGAAGCTGCTAA.............................................................................................. | 19 | 6.00 | 0.00 | - | - | - | - | 5.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................AAAAGAAATGAATGTGATG.. | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | |
| ..............................................................................................................................................................................................................................TTTATTTAAAAGAAATGTG......... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................AATAGATGCATATTAGCAG............................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |