ID: uc004alz.2_intron_13_0_chr9_84249217_r.5p
GENE: (6)
chr9:84266899-84267148-


(1)
AGO1.ip 		(3)
AGO2.ip 		(6)
BREAST 		(20)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AATTGAATGCCATCATCGGGGTACGTGGCCTACCAGGTCTACCTCCTACAGTGTGTATAACCAGCTTTCATTTCTTATTAATTTGATGGCTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTAACGTTGACCTATTTGATAAGGGTGGGAGGAGGAGAGGAAGAGACTTGGGATGTGCTAAGGTATATGGAGGAAGAGGGCTTAGCATAAGGAAGATGACAGGAGAAGCATTTTAGGAGG
........................................................................................((..((((..((..((....))..))..))))...))...((((....((..(((((((.....))))))).))..))))..................................................................................
.......................................................................................88...............................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................TACGTGTGTGTGTGTGTGTGTAGA......................................................................................................................................24029.002.001.0016.00--3.00--------2.00---1.00-1.00-----1.00-------1.00-1.001.00-1.00------
............................................................................................TACGTGTGTGTGTGTGTGTGTACT......................................................................................................................................24013.002.009.00-3.00---1.00--------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTAAC......................................................................................................................................24013.002.002.00-1.006.00----------2.00-2.00----------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTAAAA.....................................................................................................................................2504.002.00----1.00-----1.00--------------------------1.00--1.00----
.............................................................................................................................................................................................................GAGGGCTTAGCATAAGGAAGATGAC....................2513.003.00---------------1.00--2.00--------------------------
............................................................................................TACGTGTGTGTGTGTGTGTTAT........................................................................................................................................223.000.00--------3.00------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGCAAA......................................................................................................................................2402.001.002.00--------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGT.........................................................................................................................................2102.002.00-------1.00-1.00-----------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTA........................................................................................................................................2202.002.00---------1.00-----------------------------1.00-----
............................................................................................TACGTGTGTGTGTGTGTGGGCA........................................................................................................................................222.000.001.00-1.00------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGCAGA......................................................................................................................................2402.001.002.00--------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGAT........................................................................................................................................2202.001.00------------1.00---------1.00----------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTACTT.....................................................................................................................................2502.002.002.00--------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTACGA.....................................................................................................................................2501.002.001.00--------------------------------------------
.........................................................................................CTTTACGTGTGTGTGA.................................................................................................................................................161.000.00------------------------------------------1.00--
............................................................................................TACGTGTGTGTGTGTGTGTGTCAA......................................................................................................................................2401.002.00----------1.00----------------------------------
.............................................................................................ACGTGTGTGTGTGTGTGTGTGGAC.....................................................................................................................................241.000.00-----------------------------1.00---------------
..............................................................................................................................................................................................AGGTATATGGAGGAAGAGGGCTC.....................................231.000.00-----1.00---------------------------------------
..............................................................................................CGTGTGTGTGTGTGTGTGTGTGTCCGT.................................................................................................................................271.000.00--------------------------1.00------------------
..............................................................................................................TGTGTGTGTGTGTGTGTATCTTAGACC.................................................................................................................271.000.00-----1.00---------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGAAGA......................................................................................................................................2401.001.00------------------------------1.00--------------
............................................................................................TACGTGTGTGTGTGTGTGTGAAAA......................................................................................................................................2401.001.00-------------------------------1.00-------------
...........................................................................................................................................................................................................AAGAGGGCTTAGCATAAGG............................1911.001.00---------------1.00-----------------------------
............................................................................................TACGTGTGTGTGTGTGTGGGC.........................................................................................................................................211.000.00--1.00------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTG........................................................................................................................................2201.001.00-------1.00-------------------------------------
.......................................................................................................................................................AGGGTGGGAGGAGGAGAGGAAGAGACTTGGG....................................................................3111.001.00-----1.00---------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTAGC......................................................................................................................................2401.002.001.00--------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTG..........................................................................................................................................2001.001.00---------------------------1.00-----------------
............................................................................................TACGTGTGTGTGTGTGTGTTA.........................................................................................................................................211.000.00----------1.00----------------------------------
..............ATCGGGGTACGTGGCCTACC........................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00---
............................................................................................TACGTGTGTGTGTGTGTGTGCAAT......................................................................................................................................2401.001.001.00--------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTAACT.....................................................................................................................................2501.002.00------1.00--------------------------------------
............TCATCGGGGTACGTGGTTTA..........................................................................................................................................................................................................................201.000.00--------------------1.00------------------------
............................................................................................TACGTGTGTGTGTGTGAAT...........................................................................................................................................191.000.00-----------------1.00---------------------------
............................................................................................TACGTGTGTGTGTGTGATTT..........................................................................................................................................201.000.00---------------------1.00-----------------------
............................................................................................TACGTGTGTGTGTGTGTGTTTAG.......................................................................................................................................231.000.00----------------------------------1.00----------
............................................................................................TACGTGTGTGTGTGTGTGTGTAGAA.....................................................................................................................................2501.002.00------------------------1.00--------------------
.............................................................................................ACGTGTGTGTGTGTGTGTGTGTGTGTGGGG...............................................................................................................................301.000.00-----1.00---------------------------------------
............................................................................................TACGTGTGTGTGTGTGGGA...........................................................................................................................................191.000.00------------1.00--------------------------------
...............................................................................................................................................ATTTGATAAGGGTGGGAGGAGG.....................................................................................2211.001.00----------------------------1.00----------------
...........................................................................................TTACGTGTGTGTGTGGAC.............................................................................................................................................181.000.00--------------------------------1.00------------
.......TGCCATCATCGGGGTACGTGGC.............................................................................................................................................................................................................................2211.001.00-----------------------1.00---------------------
............................................................................................TACGTGTGTGTGTGTGTGTGAAAC......................................................................................................................................2401.001.00--1.00------------------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGTAT.......................................................................................................................................2301.002.00---------1.00-----------------------------------
............................................................................................TACGTGTGTGTGTGTGTGTGAAC.......................................................................................................................................2301.001.001.00--------------------------------------------
...TGAATGCCATCATCGGG......................................................................................................................................................................................................................................1730.670.67-------------------------------------------0.67-

Antisense strand
AATTGAATGCCATCATCGGGGTACGTGGCCTACCAGGTCTACCTCCTACAGTGTGTATAACCAGCTTTCATTTCTTATTAATTTGATGGCTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTAACGTTGACCTATTTGATAAGGGTGGGAGGAGGAGAGGAAGAGACTTGGGATGTGCTAAGGTATATGGAGGAAGAGGGCTTAGCATAAGGAAGATGACAGGAGAAGCATTTTAGGAGG
........................................................................................((..((((..((..((....))..))..))))...))...((((....((..(((((((.....))))))).))..))))..................................................................................
.......................................................................................88...............................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................TGTATAACCAGCTTTACTG.................................................................................................................................................................................. 193.000.00-----------3.00---------------------------------
.......................................................................................................................................................................................TGTGCTAAGGTATATAAG................................................. 181.000.00------1.00--------------------------------------
............................................................................................ACACACACACACACACACGTA......................................................................................................................................... 2101.001.00-------1.00-------------------------------------
........................................................................................CACACACACACACACACACACGTAAAGC...................................................................................................................................... 2830.330.33--------------------------------------------0.33