ID: uc004ajq.2_intron_1_0_chr9_77599927_r.3p
GENE: (6)
chr9:77599877-77600126-


(1)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(18)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(8)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
GGGACTCACTCCTCATGAGTGTAGGCCCAACTCTTGAGATACTAGGCCAAATTTTCAGAGGTCTGGGCATTTTCAGCAAATGCCCAGACTTTTTATGTTTGTCTCATCCAGTACCTAACTTACTCAACTTGGAATTCAGTGTAACACAGCTATGAGTGTATGTTTATATTCAAGTAATTCATAGTATCTTTAAACCATAGGTCCTCTGCTGTACCACTTTGAAAATCTGGCAAATGAACTTTCCATAGAA
........................................................((((((((((((((((.....))))))))))))))))......(((..(((..(((.((...............)).)))..)))..)))..(((((((((...((........))....))))))))).................................................................
..................................................51..........................................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189786SRR343335SRR189783SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189787SRR553575(SRX182781)
source: Kidney. (Kidney)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR343334TAX577742(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
........................................................................................................................................................................TTCAAGTAATTCATAG..................................................................16371.0071.0035.6715.3311.00--2.005.33-----------1.67------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGTT...............................................................19321.3371.000.33---2.00---0.331.001.00----2.001.670.67-1.33-0.671.330.330.670.67---0.33---1.00--0.670.670.330.67--0.330.33-0.330.330.330.33----0.33--0.330.33-0.330.33
........................................................................................................................................................................TTCAAGTAATTCATATAG................................................................1818.000.009.002.004.00--3.00-------------------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGT................................................................1837.0071.00----2.00---1.000.33------0.330.33-0.330.67------0.33-0.67----------------------0.33-0.330.33-----
........................................................................................................................................................................TTCAAGTAATTCATAGGTTA..............................................................2035.3371.00----1.00--3.330.33---------------0.330.33-----------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGG.................................................................1733.0071.00---------1.00-------0.67--0.33-----------------0.33-0.33----------0.33---------
..........................................................................................................................................................................................................................TTGAAAATCTGGCAAATGAAC...........2112.002.00-------------2.00-----------------------------------------------
.............................................................................................................................................................................................................................AAAATCTGGCAAATGAACT..........1912.002.00-----------2.00-------------------------------------------------
............................................................................................................................CAACTTGGAATTCAGTGTAACACAGCTA..................................................................................................2812.002.00---2.00---------------------------------------------------------
...............................................................................................................................................................................................................................AATCTGGCAAATGAACTTTCC......2112.002.00--------------2.00----------------------------------------------
.......................................................................................................................................................................................................................ACTTTGAAAATCTGGCAAATGA.............2212.002.00---2.00---------------------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGTA...............................................................1931.6771.00----0.33---0.67-----------0.67----------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAAGTT...............................................................191.000.00----------1.00--------------------------------------------------
..............ATGAGTGTAGGCCCAACT..........................................................................................................................................................................................................................1811.001.00---1.00---------------------------------------------------------
..................................................ATTTTCAGAGGTCTGGGCATTT..................................................................................................................................................................................2211.001.00-------------------------------1.00-----------------------------
.......................................................................................................................................................................................................................................AAATGAACTTTCCATTCG.181.000.001.00------------------------------------------------------------
.............................................................................................................................................................................................................CTGCTGTACCACTTTGAAAATCTGGC...................2611.001.00---1.00---------------------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATATAT................................................................181.000.00--1.00----------------------------------------------------------
.........................................................................................................................................................................TCAAGTAATTCATAGGT................................................................171.000.00--------------------------------1.00----------------------------
......................................................................................................................................................................TATTCAAGTAATTCAGGAG.................................................................191.000.00----------------------------1.00--------------------------------
........................................................................................................................................................................TTCAAGTAATTCATATAA................................................................181.000.001.00------------------------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAATAA...............................................................191.000.001.00------------------------------------------------------------
.............................................................................................................................................................................................................CTGCTGTACCACTTTGAAAATCTGGCA..................2711.001.00---1.00---------------------------------------------------------
.........................................................................................................................................................................TCAAGTAATTCATAGGTT...............................................................181.000.00-----------------------1.00-------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAAAG................................................................181.000.001.00------------------------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGTT................................................................181.000.00------------------------------1.00------------------------------
..........................................................................................................................................................................................................................TTGAAAATCTGGCAAATGAA............2011.001.00---1.00---------------------------------------------------------
......................................................................................................................................................................................................................CACTTTGAAAATCTGGCAAATGA.............2311.001.00---------------------------1.00---------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGTTG..............................................................2031.0071.00----0.67-----------------------------------------------------0.33--
.................................................................................................................................TGGAATTCAGTGTAACACAGCTA..................................................................................................2311.001.00-----------------------------------1.00-------------------------
..............................................................................................................................................................................................................TGCTGTACCACTTTGAAAATCTGGCA..................2611.001.00----------------------------------1.00--------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGA................................................................1830.6771.00-------------------------0.330.33----------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGCT...............................................................1930.6771.00--------0.33----------------------------------------0.33-----------
........................................................................................................................................................................TTCAAGTAATTCATAGA.................................................................1730.6771.00-----0.33-----------0.33-------------------------------------------
..........................................................................................................................................................................................................CCTCTGCTGTACCACTTT..............................1820.500.50-----------------------------------------0.50-------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGTCA..............................................................2030.3371.00--------------------------------------------0.33----------------
........................................................................................................................................................................TTCAAGTAATTCATAGGTAA..............................................................2030.3371.00----0.33--------------------------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGCA...............................................................1930.3371.00--------------------------------------------------0.33----------
........................................................................................................................................................................TTCAAGTAATTCATAGGCTA..............................................................2030.3371.00----------------------------------------0.33--------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGTTT..............................................................2030.3371.00------------------------0.33------------------------------------
........................................................................................................................................................................TTCAAGTAATTCATAGGAT...............................................................1930.3371.00----0.33--------------------------------------------------------

Antisense strand
GGGACTCACTCCTCATGAGTGTAGGCCCAACTCTTGAGATACTAGGCCAAATTTTCAGAGGTCTGGGCATTTTCAGCAAATGCCCAGACTTTTTATGTTTGTCTCATCCAGTACCTAACTTACTCAACTTGGAATTCAGTGTAACACAGCTATGAGTGTATGTTTATATTCAAGTAATTCATAGTATCTTTAAACCATAGGTCCTCTGCTGTACCACTTTGAAAATCTGGCAAATGAACTTTCCATAGAA
........................................................((((((((((((((((.....))))))))))))))))......(((..(((..(((.((...............)).)))..)))..)))..(((((((((...((........))....))))))))).................................................................
..................................................51..........................................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189786SRR343335SRR189783SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189787SRR553575(SRX182781)
source: Kidney. (Kidney)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR343334TAX577742(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
.....................................................................TTTTCAGCAAATGCCAAAA.................................................................................................................................................................. 192.000.00------------2.00------------------------------------------------
.................................................................................................................................................ACAGCTATGAGTGTACGC....................................................................................... 181.000.00--------------------------1.00----------------------------------
.........................................................................................TTTTTATGTTTGTCTAGG............................................................................................................................................... 181.000.00---------------------1.00---------------------------------------