ID: uc004ajj.1_intron_12_0_chr9_77376725_r
GENE: TRPM6(3)
chr9:77376675-77376964-


(1)
AGO1.ip OTHER.mut
(4)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(2)
SKIN
(1)
TESTES

Sense strand
TTTTAGATTCCATAAGGAGGAGAAATTGATGAAGATCTGTAAGATTAAAAGTAAGGAATAAACATTTAAAATATCAGCATTAAGTCCTTTGCATTGCTACTGGTTTTGTTTTGTTTTGTTTTTTAAATCTGTGACTCTTAACCACATTGTCATTCTCCCCATTCTCTCAGCTTTTTCTGTAAAACAAAATGTTCCCCACTTACTGTTGTCAACTTTCTCATGTAGACCATTTCCTTGCAGATCTTTCAGGCTCTTCAGAAATAGGGCAGGGAGCATGGGTCAAAGCGAAA
......................................................................................................(((((((((((.................(((((.............)))))..............(((......))))))))))))))....................................................................................................
...............................................................................................96...............................................................................................193...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCC.......................................................................................................................................................................2311.000.008.003.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCTAG.....................................................................................................................................................................254.000.001.003.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTATC......................................................................................................................................................................243.000.002.001.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTACTG....................................................................................................................................................................263.000.00-3.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTTTTC..................................................................................................................................................................282.000.002.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCTG......................................................................................................................................................................242.000.001.001.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTCTTC..................................................................................................................................................................282.000.002.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTACC.......................................................................................................................................................................232.000.002.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCTGG.....................................................................................................................................................................252.000.002.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCTTG.....................................................................................................................................................................252.000.00-2.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTTCTT..................................................................................................................................................................282.000.002.00------------
............TAAGGAGGAGAAATTGATGAAGATCT............................................................................................................................................................................................................................................................2612.002.00---2.00---------
...................................................................................................CTGGTTTTGTTTTGTTTTGTTTCTT......................................................................................................................................................................252.000.002.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTATC......................................................................................................................................................................262.000.001.001.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTCTCT..................................................................................................................................................................282.000.002.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTCTGG......................................................................................................................................................................242.000.001.001.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTGTTC..................................................................................................................................................................281.000.00-1.00-----------
..................................................................................................ACTGGTTTTGTTTTGTTTATC...........................................................................................................................................................................211.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTGGG...................................................................................................................................................................271.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTACT.....................................................................................................................................................................251.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTCTCC.......................................................................................................................................................................231.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTACCCC.................................................................................................................................................................291.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTCTA............................................................................................................................................................................201.000.00-1.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTCCTG.......................................................................................................................................................................231.000.00-1.00-----------
...................................................................................................CTGGTTTTGTTTTGTTTTGTTTCTTT.....................................................................................................................................................................261.000.00-1.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTCGTG.......................................................................................................................................................................231.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTCTTT.......................................................................................................................................................................251.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTAATT.....................................................................................................................................................................251.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTGGAG..................................................................................................................................................................281.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTGCCC..................................................................................................................................................................281.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTGATC.....................................................................................................................................................................251.000.001.00------------
..............................................................................................................................ATCTGTGACTCTTAACTCTG................................................................................................................................................201.000.00----1.00--------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTCCCC..................................................................................................................................................................281.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTCTC.......................................................................................................................................................................231.000.00-1.00-----------
...................................................................................................CTGGTTTTGTTTTGTTTTGTTTTTACC....................................................................................................................................................................271.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCGTC.....................................................................................................................................................................251.000.00-1.00-----------
.....................................................................................................GGTTTTGTTTTGTTTTGTTTCTGG.....................................................................................................................................................................241.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTACC......................................................................................................................................................................261.000.00-1.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTGCC......................................................................................................................................................................241.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTCGTC.....................................................................................................................................................................271.000.00-1.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTAGAG....................................................................................................................................................................261.000.00-1.00-----------
...................................................................................................CTGGTTTTGTTTTGTTTCAC...........................................................................................................................................................................201.000.001.00------------
..........................................................................................................................................................................CTTTTTCTGTAAAACTCTG.....................................................................................................191.000.00--------1.00----
....................................................................................................TGGTTTTGTTTTGTTTTGTTCGTG......................................................................................................................................................................241.000.001.00------------
...................................................................................................CTGGTTTTGTTTTGTTTTGTTTGAG......................................................................................................................................................................251.000.00-1.00-----------
..................................................................................................ACTGGTTTTGTTTTGTTCATC...........................................................................................................................................................................211.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTATTT.........................................................................................................................................................................231.000.00-1.00-----------
.....................................................................................................GGTTTTGTTTTGTTTTGTTCTCC......................................................................................................................................................................231.000.001.00------------
............................................................................................................TTTTGTTTTGTTTTTTAAATCAGCT.............................................................................................................................................................251.000.00--1.00----------
............................................................................................................TTTTGTTTTGTTTTTTAAATCAGCA.............................................................................................................................................................251.000.00--1.00----------
...................................................................................................CTGGTTTTGTTTTGTTTTGTTTTTGAGG...................................................................................................................................................................281.000.001.00------------
.........................................................................................................................TTTAAATCTGTGACTGAAG......................................................................................................................................................191.000.00-------1.00-----
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTACTCC.................................................................................................................................................................291.000.00-1.00-----------
..................................................................................................ACTGGTTTTGTTTTGTTTTGCC..........................................................................................................................................................................221.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTCTG.......................................................................................................................................................................251.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTCTCC....................................................................................................................................................................261.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTTGCT.....................................................................................................................................................................271.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTTC...........................................................................................................................................................................211.000.00-1.00-----------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTACTG.....................................................................................................................................................................251.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCCC......................................................................................................................................................................241.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTCATC......................................................................................................................................................................241.000.00-1.00-----------
..........................TGATGAAGATCTGTAACA......................................................................................................................................................................................................................................................181.000.00-----------1.00-
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCTTC.....................................................................................................................................................................251.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTTTTTGCT..................................................................................................................................................................281.000.001.00------------
....................................................................................................TGGTTTTGTTTTGTTTTGTTTCAC......................................................................................................................................................................241.000.001.00------------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTTTT......................................................................................................................................................................2630.330.33-0.33-----------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTTTTGC....................................................................................................................................................................2830.330.33-0.33-----------
..................................................................................................ACTGGTTTTGTTTTGTTTTGTTTTTTTTC...................................................................................................................................................................2930.330.330.33------------

Antisense strand
TTTTAGATTCCATAAGGAGGAGAAATTGATGAAGATCTGTAAGATTAAAAGTAAGGAATAAACATTTAAAATATCAGCATTAAGTCCTTTGCATTGCTACTGGTTTTGTTTTGTTTTGTTTTTTAAATCTGTGACTCTTAACCACATTGTCATTCTCCCCATTCTCTCAGCTTTTTCTGTAAAACAAAATGTTCCCCACTTACTGTTGTCAACTTTCTCATGTAGACCATTTCCTTGCAGATCTTTCAGGCTCTTCAGAAATAGGGCAGGGAGCATGGGTCAAAGCGAAA
......................................................................................................(((((((((((.................(((((.............)))))..............(((......))))))))))))))....................................................................................................
...............................................................................................96...............................................................................................193...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
................................................................TTTAAAATATCAGCATTAAGGTTT.......................................................................................................................................................................................................... 241.000.00-----1.00-------
...................................................................................................CTGGTTTTGTTTTGTTTCATA.......................................................................................................................................................................... 211.000.00----------1.00--
...................................................................................................................................................................................TAAAACAAAATGTTCGAT............................................................................................. 181.000.00---------1.00---
............................................TTAAAAGTAAGGAATATG.................................................................................................................................................................................................................................... 181.000.00--1.00----------
....................................................................................................................................................................................................................................ATTTCCTTGCAGATCTTGT........................................... 191.000.00------1.00------
.............................................TTTATTCCTTACTTTTA.................................................................................................................................................................................................................................... 1750.200.20------------0.20