ID: uc004aiu.1_intron_2_0_chr9_74943638_f.3p
GENE: AK095210(3)
chr9:74950108-74950357+


(21)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
ATCTCTCTGCTCTGAGGAGCCATTTATTTTATTTTAATTCTTTTAAAAAATGTATTTTATTTTTAATGGATAATTAATAATTGCATATATTTATGAGGTACAATGTGATATTTTCATGTATATGTATTCATTATGGAATAATTAAATCAAGCTAATTAAGGAAGAATAATTTATTTTTCTTTCTTTCTTTTTTTTTTGAGACGGAGTTTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCCCGATCTCGC
........................................................((((((((((((((((.......((..((((....))))..))...((((((.....)))))).....))))))))).))))))).....(((((..((..(((((((((..............)))))))))..)).)))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..........................................................ATTTTTAATGGATAACAGC.............................................................................................................................................................................1912.000.00-------4.00---1.00-1.00--1.00-------1.001.00---1.00--1.00---1.00--
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTAAG.....................................................259.000.00--3.001.003.001.001.00--------------------------------
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTTTTTTTTTTTG.................................................327.000.00--1.004.001.001.00---------------------------------
..........................................................ATTTTTAATGGATAACAG..............................................................................................................................................................................186.000.00------------------1.001.00-------------1.001.001.00--1.00
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTTTTTTTTTTG..................................................314.000.00--1.00--3.00---------------------------------
....................................................................................................................................................................................................TGAGACGGAGTTTTGCTCTGAAA...............................232.000.00------------2.00--------------------------
..........................................................................................................................................................................TTATTTTTCTTTCTTTCTTTTTCCTT......................................................262.000.00-2.00-------------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTCCCC....................................................262.000.002.00--------------------------------------
....................................................................................................................................................................................................TGAGACGGAGTTTTGCTCTGATAG..............................242.000.00--------2.00------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTTTTCTT..................................................282.000.001.00-1.00------------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTTTAG....................................................262.000.00--1.00---1.00--------------------------------
...........................................................................................................................................................................TATTTTTCTTTCTTTCTTTTTTTTTGAGC..................................................292.000.002.00--------------------------------------
...............................................................................................................................................................................................TTTTTTGAGACGGAGTTTAGA......................................212.000.00--------2.00------------------------------
........................TATTTTATTTTAATTCTTTGGAC...........................................................................................................................................................................................................232.000.00-2.00-------------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTTAGCC..................................................272.000.002.00--------------------------------------
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTTTTTTTG.....................................................282.000.00---1.001.00----------------------------------
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTCTTG........................................................252.000.002.00--------------------------------------
........................................................................................................................................................................ATTTATTTTTCTTTCTTTTAG.............................................................212.000.00--1.00-1.00----------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTTTTG....................................................2621.501.50--0.500.500.50----------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTCCC....................................................251.000.001.00--------------------------------------
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTTTTTTTTTGG..................................................311.000.00-----1.00---------------------------------
..........................................................ATTTTTAATGGATAACAGT.............................................................................................................................................................................191.000.00--------------1.00------------------------
.......................................................................................................................................................................AATTTATTTTTCTTTCTTTCTTTCCG.........................................................261.000.00------1.00--------------------------------
.....................ATTTATTTTATTTTAATTCTTTAGAG...........................................................................................................................................................................................................261.000.001.00--------------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTTTTCGC..................................................281.000.001.00--------------------------------------
......................................................................................................................................................................................CTTTCTTTTTTTTTTGGTCC................................................201.000.001.00--------------------------------------
........................................................................................................................................................................................TTCTTTTTTTTTTGAGACGGAGGAC.........................................251.000.001.00--------------------------------------
..........................................................................................................................................................................TTATTTTTCTTTCTTTCTTTTTTTTTTCCC..................................................301.000.001.00--------------------------------------
...............................................................................................................................................................................TTTCTTTCTTTCTTTTTTTTTTGAGACGGC.............................................301.000.001.00--------------------------------------
...........................................................................................................................................................................................................GAGTTTTGCTCTGTCATA.............................181.000.00-------------------------------------1.00-
........................................................................................................................................................................ATTTATTTTTCTTTCTTTCTTTTTTTTTAATG..................................................321.000.00----1.00----------------------------------
.........................................................................................................................................................................................TCTTTTTTTTTTGAGACGGAGTTTTGCCT....................................291.000.001.00--------------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTCCTG...................................................261.000.00--1.00------------------------------------
..........................................................................................................................................................................TTATTTTTCTTTCTTTCTTTTTTTTTTG....................................................2811.001.00---1.00-----------------------------------
...........................................................................................................................................................................TATTTTTCTTTCTTTCTTTTTTTTTTAAAT.................................................301.000.00---1.00-----------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTCGG....................................................251.000.001.00--------------------------------------
..........................................................................................................................................................................TTATTTTTCTTTCTTTCTTTTTTTTTG.....................................................271.000.00------1.00--------------------------------
..........................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGCCCGACT....281.000.00-1.00-------------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTGGCC....................................................261.000.001.00--------------------------------------
...........................................................................................................................................................................TATTTTTCTTTCTTTCTTTTTTTTTTCTG..................................................291.000.00---1.00-----------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTACCC.....................................................251.000.001.00--------------------------------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGTTGCTC......................................291.000.00-1.00-------------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTTTGCTTG................................................291.000.00------1.00--------------------------------
...................CCATTTATTTTATTTTAATTCTTTTAAAAATG.......................................................................................................................................................................................................321.000.00--1.00------------------------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAATGGCCCGGCT....241.000.00---------------------1.00-----------------
..............................................................................................................................................................................TTTTCTTTCTTTCTTTTTTTTTTGGCC.................................................271.000.001.00--------------------------------------
....................CATTTATTTTATTTTAATTCTTTTTG............................................................................................................................................................................................................261.000.00----1.00----------------------------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGGC..........................................251.000.001.00--------------------------------------
...........................................................................................................................................................................TATTTTTCTTTCTTTCTTTTTTTTTG.....................................................261.000.00--1.00------------------------------------
..........................................................................................................................................................................TTATTTTTCTTTCTTTCTTTTTTTTTTCCT..................................................301.000.001.00--------------------------------------
........................................................................................................................................................................................TTCTTTTTTTTTTGAGACGGCGGC..........................................241.000.001.00--------------------------------------
....................................................................................................................................................................................................TGAGACGGAGTTTTGCTCTGCAC...............................231.000.00-1.00-------------------------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTTTTCTG..................................................281.000.00----1.00----------------------------------
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTTTTTTTCG....................................................291.000.00----1.00----------------------------------
...................................................................................................................................................................................................TTGAGACGGAGTTTTGCTCTCTG................................231.000.00-1.00-------------------------------------
.......................................................................................................................................................................AATTTATTTTTCTTTCTTTCTCCC...........................................................241.000.00------1.00--------------------------------
...........................................................................................................................................................................TATTTTTCTTTCTTTCTTTTTTTTTTCG...................................................281.000.00----1.00----------------------------------
...........................TTTATTTTAATTCTTTTATATA.........................................................................................................................................................................................................221.000.00-----1.00---------------------------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGG...........................................241.000.00-1.00-------------------------------------
......................................................................................................................................................................................................AGACGGAGTTTTGCTCTGGG................................201.000.00-1.00-------------------------------------
....................CATTTATTTTATTTTACCCG..................................................................................................................................................................................................................201.000.00--1.00------------------------------------
........................................................................................................................................................................................TTCTTTTTTTTTTGAGACGGAGTTCTGC......................................281.000.001.00--------------------------------------
..........................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGA..........221.000.00----------------------------1.00----------
.............................................................................................................................................TTAAATCAAGCTAATTGACG.........................................................................................201.000.00--------------------------1.00------------
..................................................................................................................................................................................CTTTCTTTCTTTTTTTTTTGAGCTGG..............................................261.000.001.00--------------------------------------
....................................................................................................................................................................................TTCTTTCTTTTTTTTTTGGCG.................................................211.000.001.00--------------------------------------
........................................................................................................................................................................ATTTATTTTTCTTTCTTTCTTTTTAATG......................................................281.000.00---1.00-----------------------------------
.................................................................................................................................................................................................TTTTGAGACGGAGTTTTGCTCTAA.................................241.000.00-----------1.00---------------------------
.................................................................................................................................................................................................TTTTGAGACGGAGTTTTGAAA....................................211.000.00-------------------------------1.00-------
..........................................................................................................................................................................TTATTTTTCTTTCTTTCTTTTTTTTTAA....................................................281.000.00-----1.00---------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTTTGAGACGGC.............................................321.000.00-1.00-------------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTAGGC....................................................251.000.001.00--------------------------------------
.....................................................................................................................................................................................TCTTTCTTTTTTTTTTGGCG.................................................201.000.001.00--------------------------------------
.............................................................................................................................................................................TTTTTCTTTCTTTCTTTTTTTTTTGTC..................................................271.000.00-1.00-------------------------------------
.........................................................................................................................................................................................TCTTTTTTTTTTGAGACGGAGGACG........................................251.000.001.00--------------------------------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGGCG.........................................261.000.00-----1.00---------------------------------
..............................................................................................................................................................................TTTTCTTTCTTTCTTTTTTTTTACT...................................................251.000.001.00--------------------------------------
.........................................................................................................................................................................TTTATTTTTCTTTCTTTCTTTTTTTTAG.....................................................281.000.00---1.00-----------------------------------
..........................................................ATTTTTAATGGATAACGG..............................................................................................................................................................................181.000.00-----------------1.00---------------------
............................................................................................................................................................................ATTTTTCTTTCTTTCTTTTTTTTTTAG...................................................271.000.00-----1.00---------------------------------
................................................................................................................................................................................TTCTTTCTTTCTTTTTTTTTTGGGAG................................................261.000.00-1.00-------------------------------------
.....................................................................................................................................................................................TCTTTCTTTTTTTTTTGGGC.................................................201.000.001.00--------------------------------------
.............................................AAAAATGTATTTTATTTTT..........................................................................................................................................................................................1990.330.33-------------0.33-------------------------
....................................................................................................................................................................................TTCTTTCTTTTTTTTTTGAGACGGAGTTTTGC......................................3290.110.11-0.11-------------------------------------

Antisense strand
ATCTCTCTGCTCTGAGGAGCCATTTATTTTATTTTAATTCTTTTAAAAAATGTATTTTATTTTTAATGGATAATTAATAATTGCATATATTTATGAGGTACAATGTGATATTTTCATGTATATGTATTCATTATGGAATAATTAAATCAAGCTAATTAAGGAAGAATAATTTATTTTTCTTTCTTTCTTTTTTTTTTGAGACGGAGTTTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCCCGATCTCGC
........................................................((((((((((((((((.......((..((((....))))..))...((((((.....)))))).....))))))))).))))))).....(((((..((..(((((((((..............)))))))))..)).)))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...............................................................................ATTGCATATATTTATGACAA....................................................................................................................................................... 203.000.00----------2.00----1.00-----------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGATCTAGGG 282.000.001.001.00-------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGATAGGC. 262.000.00-2.00-------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGATGGGC. 262.000.001.001.00-------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGATCTGGGC 281.000.001.00--------------------------------------
.............................................................................................TGAGGTACAATGTGACTTG.......................................................................................................................................... 191.000.00---------1.00-----------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGATAGGG. 261.000.001.00--------------------------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGATAGG.. 251.000.001.00--------------------------------------
...............................................................................................................................................................................TTTCTTTCTTTCTTTTTTTTTTGAGAG................................................ 271.000.00---------------------------1.00-----------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGAGGGC.. 251.000.001.00--------------------------------------
.........................................................................................................................................................................................................CGGAGTTTTGCTCTGTCCCC............................. 201.000.00-1.00-------------------------------------
............................................................................................................................................................................................................................CCAGGCTGGAGTGCAATGGCCCGACC.... 261.000.001.00--------------------------------------
....................................................................................................................................................................................................................................GAGTGCAATGGCCCGTGA.... 181.000.00------------------------------1.00--------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGCCCGAGGG... 241.000.001.00--------------------------------------
...........................................................................AATAATTGCATATATTCTAT........................................................................................................................................................... 201.000.00---------1.00-----------------------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGTAAC........................................ 271.000.00-----------------------1.00---------------
.......................................................................................................................................................................................................................GTCACCCAGGCTGGAGTGCAAC............. 221.000.00----------------------1.00----------------
.............................................................................................................................................................................................................................CAGGCTGGAGTGCAATGGCCCGATCTAACG 301.000.00-1.00-------------------------------------
...................................................................................TTGTACCTCATAAATATATG................................................................................................................................................... 2050.200.20---------0.20-----------------------------