ID: uc004air.2_intron_13_0_chr9_74863255_f.3p
GENE: (14)
chr9:74865466-74865715+


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(2)
BREAST 		(11)
CELL-LINE 		(2)
HEART 		(6)
HELA 		(6)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(2)
XRN.ip

Sense strand
TCTCCAAGTGCGGTGTTCCTGAATGTTATGTATGCTTTTTTTTCTGTACCACAGGCATTATCTATACCTGGGGCCAGATTTTCTGCACTTTGAAATGTTGCCTTTGCCTAATGTAGGTTGACTTTCTGAATTGTGGAGAGGCACTTTTCCAAGCCAATCTTATTTGTCACTTTTTGTTTTAATATCTTGCTCTCTGACAGGAAAGAAACAATTCACTTACCAGCCTCCTCACCCCATCCTCCACCATTTC
......................................................................................................................((((.......(((((((((((....)))))))...)))).......)))).....((((((....(((((........)))))..))))))........................................
......................................................................................................................119........................................................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR029128(GSM416757)
H520. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191516(GSM715626)
66genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAAGA............................................23113.0013.008.00---------3.00--2.00------------------------------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAAG.............................................22112.0012.004.00--3.00-----2.00-----1.00-------1.00-----------1.00--------
...........................................................................................................................TTCTGAATTGTGGAGAGGCACTTTTCCAAGCCAATCTTATTTGTCACTTTTTGTTTTAATATCTTGCTCTCTGACAG..................................................7719.009.00----9.00---------------------------------------
...........................................................................................................................TTCTGAATTGTGGAGAGGCACT.........................................................................................................2216.006.00-4.001.00---------------------1.00-------------------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAAGAT...........................................2415.0013.005.00-------------------------------------------
.................CCTGAATGTTATGTATGC.......................................................................................................................................................................................................................1814.004.00--------4.00-----------------------------------
................................................................................................................................................................................TTTTAATATCTTGCTCTGC.......................................................194.000.00-----4.00--------------------------------------
...........................................................................................................................TTCTGAATTGTGGAGAGGCA...........................................................................................................2013.003.00-2.00-------------------------1.00----------------
.........................................................................................................................................................................................CTTGCTCTCTGACAGGAAAGA............................................2113.003.00-------1.00-2.00----------------------------------
......................................................................................................................................................................................TATCTTGCTCTCTGACAGGA................................................2013.003.003.00-------------------------------------------
.................................................................................................................................................................................TTTAATATCTTGCTCTGC.......................................................183.000.00-----------3.00--------------------------------
..............................................................................................................................TGAATTGTGGAGAGGCACT.........................................................................................................1913.003.00-1.002.00-----------------------------------------
.CTCCAAGTGCGGTGTTCCTGAAT..................................................................................................................................................................................................................................2313.003.00-----------------1.00--------1.00----1.00------------
.........................................................................................................................................................................................CTTGCTCTCTGACAGGAAAGAAACA........................................2513.003.00-3.00------------------------------------------
.............................................................................................................................CTGAATTGTGGAGAGGCA...........................................................................................................1812.002.00--1.00-------------------------------1.00---------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAAGATT..........................................2512.0013.00---2.00----------------------------------------
...........................................................................................................................TTCTGAATTGTGGAGAGGCACTTTT......................................................................................................2512.002.00-1.001.00-----------------------------------------
.................................................................................................................TAGGTTGACTTTCTGAATTGTGG..................................................................................................................2312.002.002.00-------------------------------------------
......................................................................................................................................................................................TATCTTGCTCTCTGACAGG.................................................1912.002.002.00-------------------------------------------
.............................................................................................................................CTGAATTGTGGAGAGGCACTT........................................................................................................2112.002.00-1.001.00-----------------------------------------
............................................................................................................................TCTGAATTGTGGAGAGGCACT.........................................................................................................2112.002.00-1.001.00-----------------------------------------
..............................................................................TTTTCTGCACTTTGAAATGTTG......................................................................................................................................................2212.002.00---2.00----------------------------------------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAAGT............................................2312.0012.00-------2.00------------------------------------
...................................................................................................................GGTTGACTTTCTGAATTGTGGAGAGGCACTTT.......................................................................................................3212.002.00------------2.00-------------------------------
................................................................................................................................AATTGTGGAGAGGCACTT........................................................................................................1812.002.00--2.00-----------------------------------------
.................................................................................................................................................................................TTTAATATCTTGCTCTCTGACAGG.................................................2412.002.00--------------2.00-----------------------------
..........................................................................................................................TTTCTGAATTGTGGAGAGGCACT.........................................................................................................2312.002.00--2.00-----------------------------------------
...........................................................................................................................TTCTGAATTGTGGAGAGGCAC..........................................................................................................2112.002.00-2.00------------------------------------------
....................................................................................................................GTTGACTTTCTGAATTCTG...................................................................................................................191.000.00-------------------1.00------------------------
.......................................................................................................................GACTTTCTGAATTGTGGAGA...............................................................................................................2011.001.001.00-------------------------------------------
...............................................................................................................................GAATTGTGGAGAGGCACTTTTCCAAGC................................................................................................2711.001.00-1.00------------------------------------------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAA..............................................2111.001.00-------1.00------------------------------------
...........................................................................................................................................................................................TGCTCTCTGACAGGAAAGAAAC.........................................2211.001.00---------------------------------------1.00----
...........................................................................................................................TTCTGAATTGTGGAGAGGCTC..........................................................................................................2111.001.00---------------------------------1.00----------
..........................................................................................................................TTTCTGAATTGTGGAGAGGCAC..........................................................................................................2211.001.00--1.00-----------------------------------------
..TCCAAGTGCGGTGTTCCT......................................................................................................................................................................................................................................1811.001.00--1.00-----------------------------------------
............................................................TCTATACCTGGGGCCAGATTTTCTG.....................................................................................................................................................................2511.001.00-1.00------------------------------------------
.........................................................................................................................................................................................CTTGCTCTCTGACAGGAAAGAAATT........................................251.000.00-------------------------1.00------------------
...............................................................................................................................GAATTGTGGAGAGGCACTTTT......................................................................................................2111.001.00--1.00-----------------------------------------
.....AAGTGCGGTGTTCCTGAAT..................................................................................................................................................................................................................................1911.001.00----------------------------1.00---------------
..............................................................................................................................TGAATTGTGGAGAGGCACTTTTCCAAGC................................................................................................2811.001.00-1.00------------------------------------------
..........................TATGTATGCTTTTTTTTCTGTACCA.......................................................................................................................................................................................................2511.001.00---1.00----------------------------------------
.............................................................................................................................CTGAATTGTGGAGAGGCAC..........................................................................................................1911.001.00---------------------1.00----------------------
...........................................................ATCTATACCTGGGGCTGAC............................................................................................................................................................................191.000.00------------------------------------------1.00-
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAAT..............................................2111.001.00-------1.00------------------------------------
...............................................................................................................TGTAGGTTGACTTTCTGAATTGT....................................................................................................................2311.001.00------------------------------------1.00-------
...............................................................................................................TGTAGGTTGACTTTCTGAATTGTGGA.................................................................................................................2611.001.00--1.00-----------------------------------------
...........................................................................................................................................................................................TGCTCTCTGACAGGAAAGAAACAAT......................................2511.001.00-1.00------------------------------------------
............................................................................................................................TCTGAATTGTGGAGAGGCA...........................................................................................................1911.001.00-1.00------------------------------------------
..........................................................................................................................TTTCTGAATTGTGGAGAGGCAG..........................................................................................................221.000.00--1.00-----------------------------------------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAACGA............................................2311.001.001.00-------------------------------------------
................................................................................................................................................................................TTTTAATATCTTGCTCTCTGACAG..................................................2411.001.00---1.00----------------------------------------
................................................................................................................................................................................TTTTAATATCTTGCTCTGCT......................................................201.000.00-----1.00--------------------------------------
........................................................................................................................................................................................TCTTGCTCTCTGACAGGAAAA.............................................211.000.00--------------------1.00-----------------------
...........................................................................................................................TTCTGAATTGTGGAGAGGC............................................................................................................1911.001.00-1.00------------------------------------------
.........................................................................................................................................................................................CTTGCTCTCTGACAGGAAAGAAACAATT.....................................2811.001.00-1.00------------------------------------------
...................TGAATGTTATGTATGCTTTTTTTTCTGTACC........................................................................................................................................................................................................3111.001.00----------------------------------------1.00---
.............................................................................................................................CTGAATTGTGGAGAGGCACT.........................................................................................................2011.001.00-1.00------------------------------------------
............................................................................................................................TCTGAATTGTGGAGAGGCACTTT.......................................................................................................2311.001.00-----------------------------------------1.00--
.................................................................................................................................................................................................CTGACAGGAAAGAAACTCTG.....................................201.000.00--------------------------------------1.00-----
................................................................................................................GTAGGTTGACTTTCTGAATTGTGGAGAGGCACTTTTCCAAGCCAATCTTATTTGTCACTTTTTGTTTTAATATCTTGCG...........................................................791.000.00----------------1.00---------------------------
.................................................................................................................................................................................TTTAATATCTTGCTCTGCT......................................................191.000.00-----1.00--------------------------------------
..........CGGTGTTCCTGAATGTTATGTATGCT......................................................................................................................................................................................................................2611.001.00--1.00-----------------------------------------
.......................................................................................................................................................................................ATCTTGCTCTCTGACAGGAA...............................................2011.001.00---------------1.00----------------------------
...........................................................................................................................TTCTGAATTGTGGAGAGGCACTTTTCC....................................................................................................2711.001.00--1.00-----------------------------------------
.................................................................................................................TAGGTTGACTTTCTGAATTGTGGAGATG.............................................................................................................281.000.001.00-------------------------------------------
......................................................................................................................................................................................TATCTTGCTCTCTGACAGGAAG..............................................221.000.00-------------------------------------1.00------
...............................................................................................................................GAATTGTGGAGAGGCACTTTTCA....................................................................................................231.000.00--1.00-----------------------------------------
....................................................................................................................GTTGACTTTCTGAATTGTGG..................................................................................................................2011.001.00--------------------------------1.00-----------
..............................................................................................................ATGTAGGTTGACTTTCTGA.........................................................................................................................1920.500.50-0.50------------------------------------------
..............................................................................................................ATGTAGGTTGACTTT.............................................................................................................................1580.120.12-------------------------------------------0.12

Antisense strand
TCTCCAAGTGCGGTGTTCCTGAATGTTATGTATGCTTTTTTTTCTGTACCACAGGCATTATCTATACCTGGGGCCAGATTTTCTGCACTTTGAAATGTTGCCTTTGCCTAATGTAGGTTGACTTTCTGAATTGTGGAGAGGCACTTTTCCAAGCCAATCTTATTTGTCACTTTTTGTTTTAATATCTTGCTCTCTGACAGGAAAGAAACAATTCACTTACCAGCCTCCTCACCCCATCCTCCACCATTTC
......................................................................................................................((((.......(((((((((((....)))))))...)))).......)))).....((((((....(((((........)))))..))))))........................................
......................................................................................................................119........................................................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR029128(GSM416757)
H520. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191516(GSM715626)
66genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................................................TTTTAATATCTTGCTCTATC...................................................... 206.000.00------6.00-------------------------------------
............................................TGTACCACAGGCATTCCAG........................................................................................................................................................................................... 191.000.00------------------1.00-------------------------
.................................................................................................................................................TTTCCAAGCCAATCTTTT....................................................................................... 181.000.00--1.00-----------------------------------------
.........................................................................................................................................................................................................................................CCATCCTCCACCATTACTT 191.000.00----------------------1.00---------------------
..................................................................................................................AGGTTGACTTTCTGAATAAT.................................................................................................................... 201.000.00-----------------------------1.00--------------
........................................................................................................................................................................................................................................CCCATCCTCCACCATTTAGTT 211.000.00------------------------------1.00-------------