ID: uc004aez.1_intron_0_0_chr9_68726980_f
GENE: (1)
chr9:68726930-68727506+


(1)
AGO2.ip
(6)
B-CELL
(10)
BRAIN
(10)
BREAST
(20)
CELL-LINE
(6)
CERVIX
(5)
HEART
(1)
HELA
(6)
LIVER
(3)
OTHER
(27)
SKIN
(1)
TESTES
(3)
UTERUS
(1)
XRN.ip

Sense strand
CGTACCCACGAGTTTGGGTCCCTTGAGGCATCTCTCCAGGCCTCTGCCTGGTGGGTCTGCGTTAGTCTGATCTTGTAGTTCATTATAATAACTTCCTTTATTAGGGATTATTCTTTTCTCCATTGTCTCTTCCTGGAAAAATTATTAATTTTTTTCTAAGCTAATATGTAGAGTGAAACCAGGATGAATCACACAGTGGTTGAGGTGTATATGGACTTTGATAGGGATATGGGCTGGAACCTGCACTCTGTCATTTACTAATTTTGTAATTTGTGGCAAATTGGTTAATATGTCTGAACTTCCATTTACTCATTAAGAGATCAAGTATCTTTGAACCTCCGTTTACACATTTATACTTTCAGACCATTTTTTATACCTTTAGAAGACTGTGACGATTAAATGAGAGAACATACATGCAGTAAATAAATTGAGCCAAATGTGAGGAGGAGGTTGTAGTGGTAATTTATTAGCTCTTTAGGAGAAAAATACCTGTGCATTCATATCCCCGCTTCTTTTTTAACTGGCAGATTTGCCTGAGGTTGACTGTACATGCAAATATTGAGCTTTCCTCCTGGCC
.................................................................................................................................................................................................................................................................................................................((((.(((((((((((.....)))))).(((((((.((..(((((((...((((((.((..(((((((......)))))))..))..........))))))..........((((......))))....)))))))..))))))))).)))))))))...................................................................................................................
...................................................................................................................................................................................................................................................................................................292........................................................................................................................................................................463................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336SRR343337TAX577739(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577453(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577740(Rovira)
total RNA. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATAGT......................................................................................................................2032.000.00-4.00---2.00-1.00--1.00-2.001.00---2.00-1.001.001.001.00---1.00-1.00-----1.00--1.001.00-------1.00-1.00-1.00--1.00--1.001.001.001.001.001.00----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATAG.......................................................................................................................199.000.00-------1.00-1.00---1.00--2.00----------------------1.001.00---1.00------1.00--------------------------------------------------
..................................................................................................................................................................................................................................ATATGGGCTGGAACCTGCACTCTGTCAC...................................................................................................................................................................................................................................................................................................................................284.000.00--4.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATTGT......................................................................................................................204.000.00-----1.00---1.00---------------1.00----------1.00-----------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................AACTTCCATTTACTCCTAG......................................................................................................................................................................................................................................................................193.000.00---3.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATAGG......................................................................................................................203.000.00-------1.00----------------1.00------------------------------1.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTGTGG.......................................................................................................................193.000.00--------2.001.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAGGTTGACTGTACATG.........................2622.002.00-----------2.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATAGA......................................................................................................................202.000.00-2.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTACAGT......................................................................................................................202.000.00----------------------1.00-------------------------------1.00-----------------------------------------------
.................................................................................................................................................................................................................................GATATGGGCTGGAACTCTG.............................................................................................................................................................................................................................................................................................................................................192.000.00------------------2.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTACTGT......................................................................................................................202.000.00---------1.00------------------------------------------1.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGACTGTACATGCA.......................1821.001.00------------1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATAAT......................................................................................................................201.000.00-------------------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................TACCTTTAGAAGACTGTGACGA......................................................................................................................................................................................2211.001.00---------------------------1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................................TAGGGATATGGGCTGGAACCCGC.............................................................................................................................................................................................................................................................................................................................................231.000.00-----------------------1.00------------------------------------------------------------------------------
.............................................GCCTGGTGGGTCTGCTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTAGAGAT.....................................................................................................................211.000.00--------------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGATTTGCCTGGTTT.....................................191.000.00-----------------------------------------1.00------------------------------------------------------------
...................................................................................................................................................................ATATGTAGAGTGAAACCAGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................231.000.00---------------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTAAAAT......................................................................................................................201.000.00----------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGGTTAATATGTCTGAACTCTG..................................................................................................................................................................................................................................................................................221.000.00--------------------------------------------------------------1.00---------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATTGG......................................................................................................................201.000.00------------------------1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................GAAGACTGTGACGATCAGG.................................................................................................................................................................................191.000.00-------------------------------------------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTTTAG.......................................................................................................................191.000.00-----------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGAGGTTGTACAG.......................................................................................................................201.000.001.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................AGTGGTTGAGGTGTATATGGACCTCG.....................................................................................................................................................................................................................................................................................................................................................................261.000.00--1.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTAGTAGT.....................................................................................................................211.000.00---------------------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................AGAAGACTGTGACGACCCC..................................................................................................................................................................................191.000.00---------------------------------------------------------------1.00--------------------------------------
...........................................................................................................................................................................................................................................................................................GTTAATATGTCTGAACTCTG..................................................................................................................................................................................................................................................................................201.000.00------------------------------1.00-----------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATTTT......................................................................................................................201.000.00--------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................TAATATGTCTGAACTTCCGTT...............................................................................................................................................................................................................................................................................211.000.00-----------------------------------------------1.00------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTAAGGT......................................................................................................................201.000.00--------------------------1.00---------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTAGAGTT.....................................................................................................................211.000.00-----1.00------------------------------------------------------------------------------------------------
..................................................GTGGGTCTGCGTTAGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1931.001.00--------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................AATATGTAGAGTGAAACCAGGATA.......................................................................................................................................................................................................................................................................................................................................................................................................241.000.00---------------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATTA.......................................................................................................................191.000.00--------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................ATATGTAGAGTGAAACCAGGATA.......................................................................................................................................................................................................................................................................................................................................................................................................231.000.00------1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTGAGGAGGAGGTTGTAGT........................................................................................................................2421.001.00-------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGTTGTATAA.......................................................................................................................191.000.00----------1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGAGGTTGTATAG.......................................................................................................................201.000.001.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................AATATGTAGAGTGAAACCAGGATGA......................................................................................................................................................................................................................................................................................................................................................................................................2531.001.00------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................ATGTAGAGTGAAACCAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................1930.670.67-----------0.67------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TGTATATGGACTTTGATAGG................................................................................................................................................................................................................................................................................................................................................................2030.670.67-----------------------------------------------------------------0.67------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGACTGTACATGC........................1820.500.50--------------------------------------------------------------------0.50---------------------------------
...............GGGTCCCTTGAGGCATCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50------0.50-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAGGAGGAGGTTGTAG.........................................................................................................................2020.500.50----------------------------------------------------------------------0.50-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAATGTGAGGAGGAGGTTGTAGTGG......................................................................................................................3020.500.50-----------------------------------------------------------------------0.50------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGAGGAGGAGGTTGTAG.........................................................................................................................2120.500.50---------------------------------------------------------------------------0.50--------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGACTGTACATGCAAATAT..................2320.500.50----------0.50-------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGAGGTTGACTGTACATGCAAATATTG................3020.500.50----------------------------0.50-------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGTTGTAGTGGTAATTTA...............................................................................................................2620.500.50---------------------------------------------------------------------0.50--------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTGTACATGCAAATATT.................2220.500.50--------------------------------------------------------------------------0.50---------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTGAGGTTGACTGTA.............................1940.500.50-----------0.25--------------------------------------------------------------------------------0.25---------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTTGACTGTACATGCAA......................2120.500.50------------------------------------------------------------------------0.50-----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTAGTGGTAATT.................................................................................................................1820.500.50-------------------------------------------------------------------------0.50----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGACTGTACATGCAAATATTG................2520.500.50------0.50-----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTTGACTGTACATGCAAATATT.................2620.500.50------0.50-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAGGTTGACTGTACATGCAAATA...................2620.500.50-----------------------------0.50------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................ACATTTATACTTTCAGAC.....................................................................................................................................................................................................................1850.400.40----------------------------------------------------------------------------0.40-------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGAGGTTGACTGT..............................1750.400.40---------------------------------0.20--------------------------------------------------------------0.20-----
......................................................................................................................................................................................................................................................................................................................................................................................ACCTTTAGAAGACTGTG..........................................................................................................................................................................................1730.330.33--------------0.33---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................CTTTGATAGGGATATGGGCTGGAACCTG..............................................................................................................................................................................................................................................................................................................................................2830.330.33------------------------------------------------------------------------------------------0.33-----------
...................................................................................................................................................................ATATGTAGAGTGAAACCAGGATG.......................................................................................................................................................................................................................................................................................................................................................................................................2330.330.33------0.33-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CTGGAACCTGCACTCTGTCAT...................................................................................................................................................................................................................................................................................................................................2130.330.33-----------------------------------------------------------------------------0.33------------------------
.................................CTCCAGGCCTCTGCCTGGTGGGTCTGCGTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3230.330.33--------------------------------------------------------------------------------0.33---------------------
...................................................................................................................................................................................................GTGGTTGAGGTGTATATGGACTTTGATAGGGA..............................................................................................................................................................................................................................................................................................................................................................3230.330.33-----------------------------------------------------------------------------------0.33------------------
....................................................................................................................................................................................................................................................................................................................................................................................ATACCTTTAGAAGACTGTG..........................................................................................................................................................................................1930.330.33------------------------------------------------------------------------------------0.33-----------------
...........................................................................................................................................................................................................GGTGTATATGGACTTTGATAGGGATA............................................................................................................................................................................................................................................................................................................................................................2630.330.33------------------------------------------------------------------0.33-----------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGCATTCATATCCCCG.....................................................................2030.330.33------------------------------------------------------------------------------0.33-----------------------
........................................................................................................................................................................................................................TTTGATAGGGATATGGGCTGGAACCT...............................................................................................................................................................................................................................................................................................................................................2630.330.33----------------------------------------------------------------------------------0.33-------------------
...........................................................................................................................................................CTAAGCTAATATGTAGAGTGAAACCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................2830.330.33----------------------------------------------------------------------------------------0.33-------------
.................................................................................................................................................................TAATATGTAGAGTGAAACCAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................2330.330.33-------------------------------------------------------------------------------0.33----------------------
.................................................................................................TTATTAGGGATTATTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.330.33---------------------------------------------------------------------------------------0.33--------------
......................................................................................................................................................................TGTAGAGTGAAACCAGGATGAATCA..................................................................................................................................................................................................................................................................................................................................................................................................2530.330.33-------------------------------------------------------------------0.33----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAATGTGAGGAGG..................................................................................................................................1670.290.29------------------------------0.29-----------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCCTGAGGTTGACTGT..............................2040.250.25------------------------------------------------------------------0.25-----------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTGAGGTTGACTGTACA...........................2140.250.25-----------0.25------------------------------------------------------------------------------------------
............................................................................................................TATTCTTTTCTCCATTGTCTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.250.25-----------------------------------------------------------------------------------------------0.25------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTTGACTGTACAT..........................1740.250.25-------------------------------------------------------------------------------------------0.25----------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGTTGTAGTGG......................................................................................................................1880.250.25---------------------------------------------------------------------------------------------0.25--------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTGAGGTTGACTGTACACAC........................2440.250.25--0.25---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGATTTGCCTGAGGTT....................................1940.250.25------0.25-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................GTTAATATGTCTGAACTT....................................................................................................................................................................................................................................................................................1850.200.20-----------0.20------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................AATTGGTTAATATGTCTGAACTTC...................................................................................................................................................................................................................................................................................2450.200.20-------------------------------0.20----------------------------------------------------------------------
.............................ATCTCTCCAGGCCTCTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.200.20-------------------------------------------------------------------------------------------------0.20----
............................................................................................................................................................................................................................................................................................................................................GAACCTCCGTTTACACATT..................................................................................................................................................................................................................................1950.200.20---------------------------------------------------------------------------------------------------0.20--
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAAAATACCTGTG...................................................................................1750.200.20--------------------------------0.20---------------------------------------------------------------------
.................................................................................................................TTTTCTCCATTGTCTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.200.20--------------------------------------------------------------------------------------------------0.20---
..............................................................................................................................................................................................ACACAGTGGTTGAGGTGTATATG............................................................................................................................................................................................................................................................................................................................................................................2350.200.20---------------0.20--------------------------------------------------------------------------------------
............................................................................................................................GTCTCTTCCTGGAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1760.170.17----------------------------------------------------------------------------------------------------0.17-
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATACCTGTG...................................................................................1660.170.17-----------------------------------------------------------------------------------------------------0.17

Antisense strand
CGTACCCACGAGTTTGGGTCCCTTGAGGCATCTCTCCAGGCCTCTGCCTGGTGGGTCTGCGTTAGTCTGATCTTGTAGTTCATTATAATAACTTCCTTTATTAGGGATTATTCTTTTCTCCATTGTCTCTTCCTGGAAAAATTATTAATTTTTTTCTAAGCTAATATGTAGAGTGAAACCAGGATGAATCACACAGTGGTTGAGGTGTATATGGACTTTGATAGGGATATGGGCTGGAACCTGCACTCTGTCATTTACTAATTTTGTAATTTGTGGCAAATTGGTTAATATGTCTGAACTTCCATTTACTCATTAAGAGATCAAGTATCTTTGAACCTCCGTTTACACATTTATACTTTCAGACCATTTTTTATACCTTTAGAAGACTGTGACGATTAAATGAGAGAACATACATGCAGTAAATAAATTGAGCCAAATGTGAGGAGGAGGTTGTAGTGGTAATTTATTAGCTCTTTAGGAGAAAAATACCTGTGCATTCATATCCCCGCTTCTTTTTTAACTGGCAGATTTGCCTGAGGTTGACTGTACATGCAAATATTGAGCTTTCCTCCTGGCC
.................................................................................................................................................................................................................................................................................................................((((.(((((((((((.....)))))).(((((((.((..(((((((...((((((.((..(((((((......)))))))..))..........))))))..........((((......))))....)))))))..))))))))).)))))))))...................................................................................................................
...................................................................................................................................................................................................................................................................................................292........................................................................................................................................................................463................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336SRR343337TAX577739(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577453(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577740(Rovira)
total RNA. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGTGGTAATTTTCCC............................................................................................................ 204.000.00----4.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTCTGT........................................... 212.000.002.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCTTTTTTAACTGAGG................................................... 202.000.00--------------2.00---------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTAGTGGTAATTCCC.............................................................................................................. 192.000.00---1.001.00-------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTAGTGGTAATTTAGCGC........................................................................................................... 221.000.00-----------------------------------1.00------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAACTGGCAGATTTGT............................................ 211.000.001.00-----------------------------------------------------------------------------------------------------
...............................................................................................................TCTTTTCTCCATTGTCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00---------------------------------------------1.00--------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTCTGC........................................... 211.000.001.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................CAAATTGGTTAATATGTG........................................................................................................................................................................................................................................................................................... 181.000.00----------------------------------------------------------------1.00-------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTCTGA........................................... 211.000.001.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTCTCT........................................... 211.000.001.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACTGGCAGATTGAAC........................................... 191.000.00------------------------------------------1.00-----------------------------------------------------------
....................................................................................................................................................................................................................................................................................................TCTGAACTTCCATTTAGAGG......................................................................................................................................................................................................................................................................... 201.000.00-----------------------1.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAACTGGCAGATTTGG............................................ 211.000.001.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGTGGTAATTTTCC............................................................................................................. 191.000.00---1.00--------------------------------------------------------------------------------------------------
.....................................................................................................TAGGGATTATTCTTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.001.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTCTTG........................................... 211.000.001.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CACAGTGGTTGAGGTGACT............................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACTGGCAGATTCCA............................................ 191.000.001.00-----------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGAACATACATGGAG.............................................................................................................................................................. 191.000.00---------------------------------1.00--------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATCATT............................................ 201.000.001.00-----------------------------------------------------------------------------------------------------
.....................................................................................................................CTCCATTGTCTCTTCTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTCTG............................................ 201.000.001.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACTGGCAGATTGTGT........................................... 211.000.001.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACTGGCAGATTGCA............................................ 181.000.00-------------------------------1.00----------------------------------------------------------------------
....................................................AAGATCAGACTAACGCAGACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2230.330.33---------------------------------------------------------------------------------0.33--------------------
...............................................AGACTAACGCAGACCCACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2130.330.33-------------------------------------------------------------------------------------0.33----------------
............................................CTAACGCAGACCCACCAGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2130.330.33--------------------------------------------------------------------------------------0.33---------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCATGTACAGTCA.................... 1730.330.33-----------------------------------------------------------------------------------------0.33------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGATATGAATGCACAGGTATTT..................................................................... 2530.330.33---------------------------0.33--------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGGGATATGAATG.................................................................. 1730.330.33-----0.33------------------------------------------------------------------------------------------------
......................................................CTACAAGATCAGACTAACGCAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2430.330.33---------------------------0.33--------------------------------------------------------------------------
...............................................................ATTATAATGAACTACAAGATCAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2640.250.25----------------------------------------------------------------------------------------------0.25-------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGGGATATGA................................................................. 1550.200.20-------------------------------------------------------------------0.20----------------------------------