ID: uc003zzh.2_intron_2_0_chr9_36344951_r.3p
GENE: (9)
chr9:36344901-36345150-


(2)
AGO2.ip 		(5)
B-CELL 		(10)
BRAIN 		(2)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
HELA 		(5)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
CTCCAGATACTCAGAAGGCTGAGGCAAGAGTATTGCATGAGGTCAGGAGTTCGAGGCCACAGTGCACAATGATCATGCCTGTGAACAGCCGCTATACTCTAGCCTGGGCAACATAGCAGGACTCCATCTCTTAAAAAAAAAAAGTATTGGAATGCAAAATGTAAAGATAGATGAAAATATGTCGTCTTTTACCGCTGCAGGCCCTGTTAAACCTGGCAGAGCGACTGGGAGAGGCAAAGCCTCGTGGACT
.......................................................................................................((((((......(((....((((...(((.........)))...)))).))).....(((((...((((((.......))))))))))).))).)))..................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037938(GSM510476)
293Red. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR343334SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
............................................................................................................CAACATAGCAGGACTCCATCTT........................................................................................................................2223.000.005.007.00---3.00---2.00-1.00---------1.00-----1.00-1.00-----------1.001.00--------------
............................................................................................................CAACATAGCAGGACTCCATCTTA.......................................................................................................................2310.000.001.00-----------3.001.001.00----1.00---------------1.00-1.00-----------1.00-------
............................................................................................................CAACATAGCAGGACTCCATCTTT.......................................................................................................................235.000.001.00--------1.00-1.00-------1.00-----------1.00-------------------------
............................................................................................................CAACATAGCAGGACTCCATCTTC.......................................................................................................................233.000.00----------1.00---------2.00------------------------------------
..................................................................................................................................................................................................................ACCTGGCAGAGCGACTGGG.....................1912.002.00-----------------1.00--------------1.00------------------------
......................................................................................................................................................................................................................GGCAGAGCGACTGGGAGA..................1812.002.00---------------2.00-----------------------------------------
.......................................................................................................................................................................................................................GCAGAGCGACTGGGAGAGGCAA.............2212.002.00-------------1.00----1.00--------------------------------------
...............................................................................................................................................................................................................TAAACCTGGCAGAGCGACTGGGAGAGGCA..............2912.002.00------1.00---------------------------------------------1.00----
............................................................................................................................................................................................................................GCGACTGGGAGAGGCAAAGCC.........2112.002.00--------1.00-----1.00------------------------------------------
.................................................................................................................................................................................................................AACCTGGCAGAGCGACT........................1711.001.00------------------------1.00--------------------------------
............................................................................................................CAACATAGCAGGACTCCATCTTCT......................................................................................................................241.000.00----------1.00----------------------------------------------
.............................................................................................................................................................................AAAATATGTCGTCTTTTACC.........................................................2011.001.00--------------------------------------------------1.00------
.....................................TGAGGTCAGGAGTTCGAGGCCACAGCGC.........................................................................................................................................................................................281.000.00------1.00--------------------------------------------------
.............................................................................................................................................................................................................................CGACTGGGAGAGGCAAAGCC.........2011.001.00--------1.00------------------------------------------------
.............................................................................................................AACATAGCAGGACTCCATCTTT.......................................................................................................................221.000.001.00--------------------------------------------------------
.................................................................................................................................................................................................................AACCTGGCAGAGCGACTG.......................1811.001.00--------------------------------------1.00------------------
.............................................................................................................................................................................................................................CGACTGGGAGAGGCAAAGCCTCGT.....2411.001.00------------------------------------1.00--------------------
...............AGGCTGAGGCAAGAGTATCTT......................................................................................................................................................................................................................211.000.00----------1.00----------------------------------------------
............................................................................................................CAACATAGCAGGACTCCATCTTAA......................................................................................................................241.000.00-----------------------------------------------1.00---------
........................................................................................................TGGGCAACATAGCAGGACTCTGA...........................................................................................................................231.000.00----------------------------------------1.00----------------
...........................................................................................................................................................................................................................AGCGACTGGGAGAGGCG..............171.000.00---------------------1.00-----------------------------------
............................................................................................................CAACATAGCAGGACTCCATCTGA.......................................................................................................................231.000.001.00--------------------------------------------------------
.........................................................................................................................................................................................................................AGAGCGACTGGGAGAGGCAAAGCCTCGTG....2911.001.00-------------------------------------------1.00-------------
.....................................TGAGGTCAGGAGTTCGAGG..................................................................................................................................................................................................1901.001.00---------------------------------------------1.00-----------
..........................................................................................................................................................................................................................GAGCGACTGGGAGAGGCAAA............2011.001.00--------1.00------------------------------------------------
..........................................................................................................................................................................................................................GAGCGACTGGGAGAGGCAA.............1911.001.00--------------1.00------------------------------------------
........................................................................................................................................................................................................................CAGAGCGACTGGGAGAGGCAAAGCCT........2611.001.00----------------1.00----------------------------------------
...............................ATTGCATGAGGTCAGGAGTCCGA....................................................................................................................................................................................................231.000.00----1.00----------------------------------------------------
.........................................................................................................................................................................................................................AGAGCGACTGGGAGAGGCAAAGCCT........2511.001.00-------------1.00-------------------------------------------
....................................................................................................................................................................................................................................GAGAGGCAAAGCCTCGTGGAC.2111.001.00---------------------------------------------------1.00-----
..............AAGGCTGAGGCAAGAGTACGG.......................................................................................................................................................................................................................211.000.00----------------------1.00----------------------------------
.................................................................................................................................................................................................................AACCTGGCAGAGCGACTGGGAGAGGCA..............2711.001.00------1.00--------------------------------------------------
.....................................TGAGGTCAGGAGTTCGAGGCAT...............................................................................................................................................................................................221.000.00----------------------------------------------1.00----------
............................................................................................................CAACATAGCAGGACTCCCTCT.........................................................................................................................211.000.00--------------------------------------------1.00------------
.............................................................................................................AACATAGCAGGACTCCATCTT........................................................................................................................211.000.00------------------------------1.00--------------------------
............................................................................................................................................................................................................................GCGACTGGGAGAGGCAAAG...........1911.001.00--------1.00------------------------------------------------
...........................................................................................................................................................................................................CTGTTAAACCTGGCAGAGCG...........................2011.001.00---------------------------------------1.00-----------------
.............................................................................................................................................................................................................................CGACTGGGAGAGGCAAAGCCT........2111.001.00-----------------------------------------------------1.00---
.........................................................................................................................................................................................................CCCTGTTAAACCTGGCAGAGCGACTGGGAGA..................3111.001.00--------------------------1.00------------------------------
.............................................................................................................AACATAGCAGGACTCCTCTT.........................................................................................................................201.000.00-------------------------1.00-------------------------------
.............................................................................................................AACATAGCAGGACTCCATCTTA.......................................................................................................................221.000.00-----------1.00---------------------------------------------
..............................................................................................................................................................................AAATATGTCGTCTTTTACCGCTGCAG..................................................2611.001.00------------------1.00--------------------------------------
............................................................................................................CAACATAGCAGGACTCCAGCCG........................................................................................................................221.000.001.00--------------------------------------------------------
......................................................................................................................................................................................CGTCTTTTACCGCTGCAGGC................................................2011.001.00----------------------------------1.00----------------------
........................................................................................................................................................................................................................CAGAGCGACTGGGAGAGG................1811.001.00------------------------------------------------1.00--------
...........................................................................................................................................................................................................................AGCGACTGGGAGAGGCAAA............1911.001.00-----------------1.00---------------------------------------
...........................................................................................................................................................................................................................AGCGACTGGGAGAGGCAAAGCCTCGTGG...2811.001.00------1.00--------------------------------------------------
...............................................................................................................................................................................................................................ACTGGGAGAGGCAAAGCCTCGCGG...241.000.00----1.00----------------------------------------------------
.....................................TGAGGTCAGGAGTTCGAGGCCA...............................................................................................................................................................................................2201.001.00----------------------------1.00----------------------------
............AGAAGGCTGAGGCAAGAATA..........................................................................................................................................................................................................................201.000.00----------------1.00----------------------------------------
.............GAAGGCTGAGGCAAGAGTAT.........................................................................................................................................................................................................................2050.200.20---------------0.20-----------------------------------------
.....................................................................................................GCCTGGGCAACATAGCAGGACTCCAT...........................................................................................................................2670.140.14--------------------------------------------------------0.14

Antisense strand
CTCCAGATACTCAGAAGGCTGAGGCAAGAGTATTGCATGAGGTCAGGAGTTCGAGGCCACAGTGCACAATGATCATGCCTGTGAACAGCCGCTATACTCTAGCCTGGGCAACATAGCAGGACTCCATCTCTTAAAAAAAAAAAGTATTGGAATGCAAAATGTAAAGATAGATGAAAATATGTCGTCTTTTACCGCTGCAGGCCCTGTTAAACCTGGCAGAGCGACTGGGAGAGGCAAAGCCTCGTGGACT
.......................................................................................................((((((......(((....((((...(((.........)))...)))).))).....(((((...((((((.......))))))))))).))).)))..................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037938(GSM510476)
293Red. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR343334SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
....................................................................................................................................AAAAAAAAAAAGTATTGCTTG................................................................................................. 213.000.00---2.00-------------------1.00---------------------------------
.................................................................................................................................CAATACTTTTTTTTTTTAAG..................................................................................................... 2012.002.00--1.00----1.00-------------------------------------------------
....................................................................................................AGCCTGGGCAACATAGCAGGACTCCAGGCC........................................................................................................................ 302.000.00----2.00----------------------------------------------------
.................................................................................................................................CTTAAAAAAAAAAAGTATTG..................................................................................................... 202.000.00--1.00----1.00-------------------------------------------------
..................................................................................................................................TTAAAAAAAAAAAGTATTGTATG................................................................................................. 231.000.00--1.00------------------------------------------------------
..................................................................................................................................TTAAAAAAAAAAAGTATTGGTAG................................................................................................. 231.000.00---1.00-----------------------------------------------------
..................................................................................................................................TTAAAAAAAAAAAGTATTGTG................................................................................................... 211.000.00-------1.00-------------------------------------------------
...................................................................................................................................TAAAAAAAAAAAGTATTTCTC.................................................................................................. 211.000.00---1.00-----------------------------------------------------
..................................................................................................................................TTAAAAAAAAAAAGTATTGTAT.................................................................................................. 221.000.00--1.00------------------------------------------------------
...............................................................................TGTGAACAGCCGCTAAAA......................................................................................................................................................... 181.000.00-----1.00---------------------------------------------------
........................................TGGCCTCGAACTCCTGACC............................................................................................................................................................................................... 1901.001.00---------------------------------1.00-----------------------
...................................................................................................................................TAAAAAAAAAAAGTATTCTG................................................................................................... 201.000.00---1.00-----------------------------------------------------
...................................................................................................................................TAAAAAAAAAAAGTATTGTTA.................................................................................................. 211.000.00-------1.00-------------------------------------------------
...................................................................................................................................TAAAAAAAAAAAGTATTTGT................................................................................................... 201.000.00----------------------1.00----------------------------------
...................................................................................................................................TAAAAAAAAAAAGTATTGCTAG................................................................................................. 221.000.00--1.00------------------------------------------------------
...................................................................................................................................CCAATACTTTTTTTTTTTA.................................................................................................... 1920.500.50-----------------------0.50---------------------------------
...........................................................................................................................................................................GACGACATATTTTCA................................................................ 1520.500.50------------------------------------------------------0.50--
................................................................CAGGCATGATCATTGTG......................................................................................................................................................................... 1740.250.25-------------------------------------------------------0.25-
....................................................................................................AGATGGAGTCCTGCTATGTTGCCCAGGCT......................................................................................................................... 2960.170.17----0.17----------------------------------------------------