ID: uc003zzf.1_intron_3_0_chr9_36204177_f.3p
GENE: (4)
chr9:36262995-36263244+


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
OTHER
(2)
SKIN

Sense strand
GACAAAAAGACCAAAATACAGAAGGCGAAGTTGCCTGAGGTTGCACAGCTGTTAAACAGAAGAGCCCAGCCCTTGATCCCACTTGCTTAGCTACTACCACCCAGTGTTTCCTCTCTATACTAACTAGAGCATTGCACTTTATAACAGAAACCTATCTCAAGGTTCATCTCAGCCATCACTTTTTTTTTTTTTTGAGACAGGGTTTCACTCTTGCCCAGGCTGGAGTGCAATGGCGTCATCTCGGCTCACT
......................................................................................................(((((.....(((((.......)))))....)))))........((.((((......)))))).((((((...................)))))).....................................................
..............................................................................................95.......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................................................CCATCACTTTTTTTTTTTAG..........................................................204.000.00--2.001.00--1.00---------
............................................................................................................................................................................CCATCACTTTTTTTTTAG............................................................184.000.003.00--1.00------------
............................................................................................................................................................................CCATCACTTTTTTTTTTAG...........................................................193.000.001.00-2.00-------------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTCTCG.....................................................233.000.002.00--1.00------------
............................................................................................................................................................................CCATCACTTTTTTTTTTTTTAAG.......................................................233.000.001.00-1.001.00------------
............................................................................................................................................................................CCATCACTTTTTTTTTTTTTAG........................................................223.000.00--2.00---1.00---------
..............................................................................................................................................................................ATCACTTTTTTTTTTTCTCG........................................................202.000.001.00-----1.00---------
............................................................................................................................................................................CCATCACTTTTTTTTTTTTTCTAG......................................................242.000.001.00--1.00------------
........................................................................................................................................................................................................................AGGCTGGAGTGCAATGGCGTCGGC..........241.000.00--------1.00-------
................................................................................................................................................................................CACTTTTTTTTTTTTTTGTTGT....................................................221.000.00-----1.00----------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTGAGAAAG..................................................261.000.00-----1.00----------
............................................................................................................................................................................CCATCACTTTTTTTTTTTTG..........................................................201.000.00---1.00------------
...........................................................................................................................................................................................................TTCACTCTTGCCCAGGCTGGAT.........................221.000.00-1.00--------------
.............................................................................................................................................................................CATCACTTTTTTTTTTCTTG.........................................................201.000.001.00---------------
...................................................................................................CCCAGTGTTTCCTCTCTTTAA..................................................................................................................................211.000.00----------1.00-----
...............................................................................................................................................................................TCACTTTTTTTTTTTTTTGAGC.....................................................221.000.00-1.00--------------
......................................................................................................................................................................................................................CCAGGCTGGAGTGCAATGGCGTTC............241.000.00-------1.00--------
..............................................................................................................................................................................ATCACTTTTTTTTTTTAGT.........................................................191.000.00-----1.00----------
............................................................................................................................................................................CCATCACTTTTTTTTTTTTCCTG.......................................................231.000.00-----1.00----------
.............................................................................................................................................................................CATCACTTTTTTTTTTTAATG........................................................211.000.001.00---------------
...............................................................................................................................................................................................................CTCTTGCCCAGGCTGGAATG.......................201.000.00---------1.00------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTGAGACAGGGGC..............................................271.000.00-1.00--------------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTGAGG.....................................................231.000.00-1.00--------------
......................................................................................TTAGCTACTACCACCTAG..................................................................................................................................................181.000.00------------1.00---
............................................................................................................................................................................CCATCACTTTTTTTTTTTTCTAG.......................................................231.000.00---1.00------------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTGGG......................................................221.000.00-1.00--------------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTCCCG.....................................................231.000.001.00---------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTTCCGC..........................................291.000.00----1.00-----------
..................................................................................................................................................................................CTTTTTTTTTTTTTTGAGACAGGGGTT.............................................271.000.00--1.00-------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTGAGACAGGGGG..............................................261.000.00-1.00--------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................261.000.00--1.00-------------
...............................................................................................................................................................................TCACTTTTTTTTTTTTTTGAGACAGGGCC..............................................291.000.00-1.00--------------
.............................................................................................................................................................................CATCACTTTTTTTTTTTTTTATT......................................................231.000.00--1.00-------------
.............................................................................................................................................................................CATCACTTTTTTTTTTTTTACTT......................................................231.000.001.00---------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................271.000.00-1.00--------------
....................................................TAAACAGAAGAGCCCGGGG...................................................................................................................................................................................191.000.00-----1.00----------
.............................................................................................................................................................................CATCACTTTTTTTTTTTTTTCAG......................................................231.000.00--1.00-------------
................................................................................................................................................................................................................TCTTGCCCAGGCTGGAGTGCAATGGCGTT.............291.000.00----1.00-----------
..........................................................................................................................................................................................................TTTCACTCTTGCCCAGGCTGGATTGC......................261.000.00----1.00-----------
....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................261.000.00----1.00-----------
................................................................................................................................................................................................................TCTTGCCCAGGCTGGAGTGCACGG..................241.000.00----1.00-----------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTCCTG.....................................................231.000.00---1.00------------
..............................................................................................................................................................................................................ACTCTTGCCCAGGCTGGAGTGCAACGGT................281.000.00-1.00--------------
..............................................................................................................................................................................ATCACTTTTTTTTTTTTTTGGGGC....................................................241.000.00-1.00--------------
............................................................................................................................................................................CCATCACTTTTTTTTTTTG...........................................................191.000.001.00---------------
............................................................................................................................................................................CCATCACTTTTTTTTTTTTTTG........................................................2250.600.600.40-----0.20---------
............................................................................................................................................................................................................TCACTCTTGCCCAGGCTGGAGTGCAATGGCG...............3170.290.29-0.29--------------
..............................................................................................................................................................................................TTTGAGACAGGGTTTCACTCTTGCCCAGGCTGG...........................3370.140.14----0.14-----------
...............................................................................................................................................................................................TTGAGACAGGGTTTCACTCTTGCC...................................2480.120.12-0.12--------------
..............................................................................................................................................................................................................ACTCTTGCCCAGGCTGGAGTGCAATGGCG...............2980.120.12-0.12--------------

Antisense strand
GACAAAAAGACCAAAATACAGAAGGCGAAGTTGCCTGAGGTTGCACAGCTGTTAAACAGAAGAGCCCAGCCCTTGATCCCACTTGCTTAGCTACTACCACCCAGTGTTTCCTCTCTATACTAACTAGAGCATTGCACTTTATAACAGAAACCTATCTCAAGGTTCATCTCAGCCATCACTTTTTTTTTTTTTTGAGACAGGGTTTCACTCTTGCCCAGGCTGGAGTGCAATGGCGTCATCTCGGCTCACT
......................................................................................................(((((.....(((((.......)))))....)))))........((.((((......)))))).((((((...................)))))).....................................................
..............................................................................................95.......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................CAGTGTTTCCTCTCTTGGC.................................................................................................................................. 191.000.00-----------1.00----
......................................................................................TTAGCTACTACCACCT.................................................................................................................................................... 161.000.00--------------1.00-
................................................................................................................................................................................................................TCTTGCCCAGGCTGGAGTGCAT.................... 221.000.00-------------1.00--
........................................................................................................................................................................................................GGTTTCACTCTTGCCCAGGCTGGAGTGTG..................... 291.000.00-1.00--------------
.........................................................................................CTGGGTGGTAGTAGC.................................................................................................................................................. 1520.500.50---------------0.50