| (1) BREAST | (21) CELL-LINE | (1) CERVIX | (3) OTHER | (2) SKIN | (1) XRN.ip |
| GCTGGGGCTGGTGGCCACGGTGGGGGACCTGGCACACGCTCCCATTATAGGACAGGGACCCCAGGGTGTGGGAGGGTCTCTGCGAGGTCGGTAACCCGGAGCATGTAGGGAGCCTGGGCAGACTTCTGCGGTTTCTGGGGGCGCTTGGCGTTAGCCTTCTCTTCCTCTAGGCTAAGAACCAATGTTCTCTCCTTCCGCAGTACTTTTTGGGGATCCTGAAAGCCAAGGGGACCCTGCGACCACCTGAGCG ..............................................................................................(((((((..(((((((.((....))....)))))))..))))))).......(((....))).............................................................................................. ..............................................................................................95...............................................................160........................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR037937(GSM510475) 293cand2. (cell line) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR029127(GSM416756) A549. (cell line) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR343334 | SRR029126(GSM416755) 143B. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR189784 | SRR037932(GSM510470) 293cand4_rep1. (cell line) | GSM532876(GSM532876) G547T. (cervix) | SRR029129(GSM416758) SW480. (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189785 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR037941(GSM510479) 293DroshaTN. (cell line) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) | TAX577589(Rovira) total RNA. (breast) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR029125(GSM416754) U2OS. (cell line) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................AGCATGTAGGGAGCCAAA..................................................................................................................................... | 18 | 58.00 | 0.00 | 9.00 | 8.00 | 6.00 | 6.00 | 5.00 | 4.00 | - | 3.00 | 3.00 | - | 3.00 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | |
| ...............................................................................................................................................................................................CTTCCGCAGTACTTTAC.......................................... | 17 | 3.00 | 0.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................AGCATGTAGGGAGCCACA..................................................................................................................................... | 18 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................GTAACCCGGAGCATGCCGG............................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................AGCCTTCTCTTCCTCT.................................................................................. | 16 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................................................................................AGCATGTAGGGAGCCCAT..................................................................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................GGGGGACCTGGCACACACAG................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................AGCATGTAGGGAGCCAAT..................................................................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................AGCATGTAGGGAGCCATA..................................................................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .CTGGGGCTGGTGGCCAGAG...................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CCAGGGTGTGGGAGGGTCTCTGCGAGGCCG................................................................................................................................................................ | 30 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...................................................................................................AGCATGTAGGGAGCCAAG..................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............CCACGGTGGGGGACCACG.......................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................GGGGGCGCTTGGCGTTCTTA.............................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................ACCCTGCGACCACCTGAGC. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................AGCATGTAGGGAGCCGAC..................................................................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................AGCATGTAGGGAGCCATT..................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GCTGGGGCTGGTGGCCACGGTGGGGGACCTGGCACACGCTCCCATTATAGGACAGGGACCCCAGGGTGTGGGAGGGTCTCTGCGAGGTCGGTAACCCGGAGCATGTAGGGAGCCTGGGCAGACTTCTGCGGTTTCTGGGGGCGCTTGGCGTTAGCCTTCTCTTCCTCTAGGCTAAGAACCAATGTTCTCTCCTTCCGCAGTACTTTTTGGGGATCCTGAAAGCCAAGGGGACCCTGCGACCACCTGAGCG ..............................................................................................(((((((..(((((((.((....))....)))))))..))))))).......(((....))).............................................................................................. ..............................................................................................95...............................................................160........................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR037937(GSM510475) 293cand2. (cell line) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR029127(GSM416756) A549. (cell line) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR343334 | SRR029126(GSM416755) 143B. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR189784 | SRR037932(GSM510470) 293cand4_rep1. (cell line) | GSM532876(GSM532876) G547T. (cervix) | SRR029129(GSM416758) SW480. (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189785 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR037941(GSM510479) 293DroshaTN. (cell line) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) | TAX577589(Rovira) total RNA. (breast) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR029125(GSM416754) U2OS. (cell line) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................AGTACTGCGGAAGGAGAGAA.............................................. | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................CTTCTCTTCCTCTAGACGG............................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .................................................................................................................CTGGGCAGACTTCTGATAG...................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...............................................................................................................AGAAGTCTGCCCAGGC........................................................................................................................... | 16 | 7 | 0.29 | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.29 |