ID: uc003zxl.2_intron_7_0_chr9_35664124_r
GENE: (4)
chr9:35664074-35664418-


(1)
AGO1.ip 		(3)
B-CELL 		(4)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCTATAACCAATTTGCTGCCAACTCAGAGAGGTCCCAGACCACCCTGCAGGTAACCTGGAGATGACCTCAAATCTTGCCCCTTACCTTTCCCCTTCATCTGGAGACCCAAACTTCATACATTTCCTGCATTTATAGAGCCCTCTGGGTGCTCAGCTCTGTGGTAAGTTCCTTGTAGAGAAACGAGAGTTTCTCTCAGGAGCACAGCTTACTGAAGGCTGGGAATGTGGATACAGATGAATGCAATATAAGGAGTGGCTTCTCTCCCTGCTTCCAATCCTTTCTCCCTCACTCCAGGAGCAGCTAAAGAAAAATAAAGGTTTCCGGAGGTTTGTACGGCTTCAGGA
................................................................................................................(((((.....(((.((((((...((((((....)).)))).............(((((.((.((((((((....))))))))))))))).((((((.....)))))).))))))))).....)))))..........................................................................................................
............................................................................................................109...............................................................................................................................239........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577746(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................TCATACATTTCCTGCAACG.....................................................................................................................................................................................................................1940.000.0033.006.00---------1.00-------------------
..........................................................................................................................................................................................................................................................................................................................AAGGTTTCCGGAGGT................1523.503.50---------2.00--------------0.500.50--0.50--
.........................................................................................................................................................................................................................TGGGAATGTGGATACAGA..............................................................................................................1812.002.00-------2.00-----------------------
................................................................................................................TTCATACATTTCCTGCATTTATAGAG...............................................................................................................................................................................................................2612.002.00----2.00--------------------------
.............................................................................................................................................................................................................................................................................................................................GTTTCCGGAGGTTTGTGG..........182.000.00--------2.00----------------------
.............................................................................................................................................................................................................................................................................................................................GTTTCCGGAGGTTTGTACAGTT......222.000.00--------------1.00---1.00------------
...........................................................................................................................................................................................................................................................................................................................AGGTTTCCGGAGGTTTGTACGG........2212.002.00--2.00----------------------------
.....................................................................................................................................................................................................................AGGCTGGGAATGTGGATA..................................................................................................................1811.001.00-----1.00-------------------------
.....................................................................................................................................................................................................................AGGCTGGGAATGTGGATACAGATGAA..........................................................................................................2611.001.00--1.00----------------------------
......................................................................................................................................................TCAGCTCTGTGGTAAGTTCCTTGTAGA........................................................................................................................................................................2711.001.00---1.00---------------------------
.............................................................................................................................................TCTGGGTGCTCAGCTCTGTG........................................................................................................................................................................................2011.001.00-----------------1.00-------------
..............................................................TGACCTCAAATCTTGTAT.........................................................................................................................................................................................................................................................................181.000.00------1.00------------------------
.............................................................................................................................................................................................................................................................................................................................GTTTCCGGAGGTTTGTGT..........181.000.00-------------1.00-----------------
............................................................................................................................................................................................................GCTTACTGAAGGCTGGGAATGTGGATACA................................................................................................................2911.001.00---1.00---------------------------
...................................................................................................................................................................................................................GAAGGCTGGGAATGTATGT...................................................................................................................191.000.00----------------------1.00--------
..................................................................................................................CATACATTTCCTGCAACG.....................................................................................................................................................................................................................181.000.001.00------------------------------
.............................................................................................................................................................................................................................................................................................................................GTTTCCGGAGGTTTGTACAGAT......221.000.00---------------1.00---------------
..................................................................................................................................................GTGCTCAGCTCTGTGGTAAGTTCCTTG............................................................................................................................................................................2711.001.00----1.00--------------------------
..........................................................................................................................................................................................................................................................................................................................AAGGTTTCCGGAGGTGAAC............1921.003.50-----------------------0.50--0.50----
........................................................................................................................................................................................................................CTGGGAATGTGGATACAGATGA...........................................................................................................2211.001.00---------------------1.00---------
...........................................................................................................................................................................................................................................................................................................................AGGTTTCCGGAGGTTTGTACGGCT......2411.001.00-------------------1.00-----------
........................................................................................................ACCCAAACTTCATACATTTCCG...........................................................................................................................................................................................................................221.000.001.00------------------------------
...........................................................................................CCTTCATCTGGAGACCCA............................................................................................................................................................................................................................................1811.001.00-----1.00-------------------------
.....................................................................................................................................................................................................................AGGCTGGGAATGTGGAT...................................................................................................................1720.500.50----------0.50--------------------
..........................................................................................................................................................................................................................................................................................................................AAGGTTTCCGGAGGTG...............1620.503.50----------0.50--------------------
............................................................................................................................................................................GTAGAGAAACGAGAG..............................................................................................................................................................1550.200.20-----------------------------0.20-
...........................................................................................CCTTCATCTGGAGACC..............................................................................................................................................................................................................................................1650.200.20------------------------------0.20
....................................................................................................................................................................................................................AAGGCTGGGAATGTGG.....................................................................................................................1650.200.20----------0.20--------------------

Antisense strand
TCTATAACCAATTTGCTGCCAACTCAGAGAGGTCCCAGACCACCCTGCAGGTAACCTGGAGATGACCTCAAATCTTGCCCCTTACCTTTCCCCTTCATCTGGAGACCCAAACTTCATACATTTCCTGCATTTATAGAGCCCTCTGGGTGCTCAGCTCTGTGGTAAGTTCCTTGTAGAGAAACGAGAGTTTCTCTCAGGAGCACAGCTTACTGAAGGCTGGGAATGTGGATACAGATGAATGCAATATAAGGAGTGGCTTCTCTCCCTGCTTCCAATCCTTTCTCCCTCACTCCAGGAGCAGCTAAAGAAAAATAAAGGTTTCCGGAGGTTTGTACGGCTTCAGGA
................................................................................................................(((((.....(((.((((((...((((((....)).)))).............(((((.((.((((((((....))))))))))))))).((((((.....)))))).))))))))).....)))))..........................................................................................................
............................................................................................................109...............................................................................................................................239........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577746(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............GCTGCCAACTCAGAGATGGT....................................................................................................................................................................................................................................................................................................................... 201.000.00----------------1.00--------------
....................................................................................................................................................................................................................................................................GAGAAAGGATTGGAAGCAGGGAGA............................................................. 2411.001.00---1.00---------------------------
...............................................................................................................................................................................................................................................................................CCAATCCTTTCTCCCTCGGT...................................................... 201.000.00--------------------1.00----------
...........TTTGCTGCCAACTCACTAT........................................................................................................................................................................................................................................................................................................................... 191.000.00------------1.00------------------
..................................................................................................................................................................................AAACGAGAGTTTCTCTTC..................................................................................................................................................... 181.000.00------1.00------------------------
.............................................................................................................................................................................................................................................................................AGGGAGAAAGGATTGGAA.......................................................... 1820.500.50---------------------------0.50---