ID: uc003zxl.2_intron_2_0_chr9_35662000_r
GENE: (9)
chr9:35661950-35662225-


(1)
AGO2.ip
(1)
B-CELL
(7)
BREAST
(24)
CELL-LINE
(3)
CERVIX
(1)
HEART
(3)
HELA
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(7)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
GACCAGGAGGAGCTGTCACGCTGGTACCACAGTCTGACTTGGGCTATCAGGTAAGTTGTGTCTTCCCCCAGGAAGGGTGCTGTGATGAGGCCCACAAGCAGGAAATATGCAGTTCCTGTCTCATGCCCTACATTGGTCTGGCACACCCCAGCCACCAACCCCCAGATGATTTTGTCTGAATAAAGCACTCATACCAGTGCCTGAACTGACTGTCTTCTCTCCACAGCAGCCAGAAAAACTAGAGGAATCTTATAGATTCCAGAACTCAGGATACCT
...................................................................................................................((((.............(((((((((......))))..))))).....(((.(((...(((........(((((......))))).......))).))).)))....))))..................................................
................................................................................................................113..............................................................................................................226................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACAG..................................................25122.0022.005.004.002.001.002.00----1.00--2.00-2.00--2.00------------------------1.00--------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCACAG..................................................2618.008.00-2.00-1.002.00-1.00--------1.001.00----------------------------------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCACAGAA................................................2815.008.005.00--------------------------------------------------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACAGCA................................................2715.005.004.00-1.00------------------------------------------------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACAGCAG...............................................2814.004.002.00-1.00------1.00-----------------------------------------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCACAGCA................................................2814.004.001.00-----1.00--------------------1.00---1.00-------------------
................................................................................................................................................................CCCAGATGATTTTGTCTGAATAAAGCACTCATACCAGTGCCTGAACTGACTGTCTTCTCTCCACAG..................................................6614.004.00-------4.00-------------------------------------------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACAGAA................................................2714.0022.002.00----------------------1.00--------1.00------------------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCACAGCAG...............................................2914.004.001.00-----1.00--1.00-1.00---------------------------------------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCA.....................................................2313.003.00-------------2.00----------------1.00--------------------
................................................................................................................................................................................................................................................................TTCCAGAACTCAGGATACC.1911.001.00-------------------------------------1.00-------------
................................................................................................................................................................................................ACCAGTGCCTGAACTGAC..................................................................1811.001.00----------------------------------1.00----------------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCA.....................................................2211.001.00---1.00-----------------------------------------------
................................TCTGACTTGGGCTATCAG..................................................................................................................................................................................................................................1811.001.00--------1.00------------------------------------------
.................ACGCTGGTACCACAGTCTGACTTGGGCC.......................................................................................................................................................................................................................................281.000.00----------1.00----------------------------------------
.....................................................................................................................GTCTCATGCCCTACAACC.............................................................................................................................................181.000.00-----------------------------------------1.00---------
.......................GTACCACAGTCTGACGTTC..........................................................................................................................................................................................................................................191.000.00----------------------------------------1.00----------
............................................................................................................................................................................................................ACTGACTGTCTTCTCTCCACAGCA................................................2411.001.00---------------------------------------1.00-----------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACA...................................................2411.001.00---1.00-----------------------------------------------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCACAATAG...............................................291.000.00-----------1.00---------------------------------------
........................................................................................................................................................................................................................................................CTTATAGATTCCAGAACT..........1811.001.00----------------------1.00----------------------------
....AGGAGGAGCTGTCACGCTGGCACC........................................................................................................................................................................................................................................................241.000.00----------1.00----------------------------------------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACAGC.................................................2611.001.001.00--------------------------------------------------
...............................GTCTGACTTGGGCTATCAGGTAAGTTGTA........................................................................................................................................................................................................................291.000.00-------------------------------------------1.00-------
........................................................................................................................................................................................................CTGAACTGACTGTCTTCTCTCCACAGA.................................................2711.008.001.00--------------------------------------------------
.........................................................................................................................................................................................................TGAACTGACTGTCTTCTCTCCACAGA.................................................2611.0022.00---------------1.00-----------------------------------
....AGGAGGAGCTGTCACGCT..............................................................................................................................................................................................................................................................1811.001.00-----------------------------1.00---------------------
.......................................................................................................................................................................GATTTTGTCTGAATAAAG...........................................................................................1820.500.50-------------------------------------------------0.50-
......................................................................................................................................................................................................................................CAGAAAAACTAGAGGAA.............................1720.500.50------------------------------------------------0.50--
...............................................................TCCCCCAGGAAGGGTG.....................................................................................................................................................................................................1670.140.14----------0.14----------------------------------------
........................................................................................................................................................CACCAACCCCCAGAT.............................................................................................................1590.110.11-------------------0.11-------------------------------

Antisense strand
GACCAGGAGGAGCTGTCACGCTGGTACCACAGTCTGACTTGGGCTATCAGGTAAGTTGTGTCTTCCCCCAGGAAGGGTGCTGTGATGAGGCCCACAAGCAGGAAATATGCAGTTCCTGTCTCATGCCCTACATTGGTCTGGCACACCCCAGCCACCAACCCCCAGATGATTTTGTCTGAATAAAGCACTCATACCAGTGCCTGAACTGACTGTCTTCTCTCCACAGCAGCCAGAAAAACTAGAGGAATCTTATAGATTCCAGAACTCAGGATACCT
...................................................................................................................((((.............(((((((((......))))..))))).....(((.(((...(((........(((((......))))).......))).))).)))....))))..................................................
................................................................................................................113..............................................................................................................226................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................................................................................................................ACAGCAGCCAGAAAAACTATGA................................ 222.000.00-----------------------------------1.00--1.00------------
......................................................................................................................CAATGTAGGGCATGAGA............................................................................................................................................. 1712.002.00--------2.00------------------------------------------
.................................................................................................................................................CCCCAGCCACCAACCCCGTGC.............................................................................................................. 211.000.00--------------------1.00------------------------------
.......................TGATAGCCCAAGTCAGACTGTGGTAC................................................................................................................................................................................................................................... 2611.001.00-------------------------1.00-------------------------
...................................................................................................................................................CCAGCCACCAACCCCCATTT............................................................................................................. 201.000.00---------------------------------------------1.00-----
........................CCCAAGTCAGACTGTGGTA......................................................................................................................................................................................................................................... 1911.001.00--------------------------1.00------------------------
............................................................................................................GCAGTTCCTGTCTCATGCCCC................................................................................................................................................... 211.000.00------------------1.00--------------------------------
.................................................................................................................CCAATGTAGGGCATGAGACAGGA............................................................................................................................................ 2311.001.00-------------------1.00-------------------------------
.......................CAAGTCAGACTGTGGTAC........................................................................................................................................................................................................................................... 1811.001.00------------------------------------1.00--------------
..............................................................................................................CAATGTAGGGCATGAGACAGGAACT............................................................................................................................................. 2511.001.00-----1.00---------------------------------------------
.................................................................................................................................................................................................................TGGCTGCTGTGGAGAGAAGACAG............................................ 2311.001.00---------------------1.00-----------------------------
...............................................................................................................ACCAATGTAGGGCATGAGACAGGAAC........................................................................................................................................... 2611.001.00-----1.00---------------------------------------------
..................................................................................................................GACCAATGTAGGGCATGAGACAGG.......................................................................................................................................... 2411.001.00----------------------------------------------1.00----
........................GCCCAAGTCAGACTGTGGTA........................................................................................................................................................................................................................................ 2011.001.00--------------------------------------------1.00------
.............................ATAGCCCAAGTCAGACTG..................................................................................................................................................................................................................................... 1811.001.00------------------------1.00--------------------------
.................................................................................................................................................................TGCTTTATTCAGACAAAATCATCTGG......................................................................................... 2611.001.00-----1.00---------------------------------------------
....................................................................................................................................................CAGCCACCAACCCCCTGG.............................................................................................................. 181.000.00---------------------------------1.00-----------------
...........................................................................................................GTAGGGCATGAGACAGGAACTGCA................................................................................................................................................. 2411.001.00------------------1.00--------------------------------
............................................................................................................ACCAATGTAGGGCATGAGACAGGAACTGC........................................................................................................................................... 2911.001.001.00--------------------------------------------------
....................................................................................................................................................................................................................TTTTCTGGCTGCTGTGGAGAGAAGA....................................... 2511.001.00------1.00--------------------------------------------
..................TAGCCCAAGTCAGACTGTGGTACCAGCG...................................................................................................................................................................................................................................... 2811.001.00----------------------------1.00----------------------
................................................................................................................................................................................................ACAGTCAGTTCAGGCACTGGT............................................................... 2111.001.00----------------1.00----------------------------------
...........................................................................................................................................................................................................................TCTAGTTTTTCTGGCTGCTGTGGA................................. 2411.001.00-----1.00---------------------------------------------
.............................................................................................................GCATGAGACAGGAACTG...................................................................................................................................................... 1720.500.50-----------------------------------------------0.50---
...........................................................................................................................................................................................TCAGGCACTGGTATGAG........................................................................ 1720.500.50--------0.50------------------------------------------
..........................CAAGTCAGACTGTGG........................................................................................................................................................................................................................................... 1570.140.14--------------------------------------------------0.14