ID: uc003zww.2_intron_6_0_chr9_35558369_f
GENE: (7)
chr9:35558319-35558508+


(1)
B-CELL
(4)
BRAIN
(3)
BREAST
(4)
CELL-LINE
(3)
CERVIX
(1)
HEART
(3)
HELA
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
GCAGCGTAAGAACATGCCATGGAGTGTGGTTGAGGCTTCCACACAGCTAGGTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCTCCCAGGCCCATCCACCAAGGTCCTGCATGGCCTCTACAACAAAGTCAGCCAATTC
.......................................................................(((((.((((((.((......((...)).......((((....))))..)).))))))..)))))......................................................
................................................................65.........................................................................140................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040018(GSM532903)
G701N. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR040008(GSM532893)
G727N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577743(Rovira)
total RNA. (breast)
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCTCCCAG..................................................90116.0016.00-16.00------------------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGA..........................................................................66111.0011.0011.00-------------------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCTC......................................................8618.008.008.00-------------------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCC........................................................8417.007.007.00-------------------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCTCCCA...................................................8916.006.00-6.00------------------------
..................ATGGAGTGTGGTTGAGGCTTC.......................................................................................................................................................2113.003.00-----1.00---------------1.001.00---
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCT.......................................................8512.002.00--2.00-----------------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCC................................................................7612.002.00--2.00-----------------------
.................CATGGAGTGTGGTTGAGGCTT........................................................................................................................................................2112.002.00---2.00----------------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCTCC.....................................................8712.002.002.00-------------------------
................CCATGGAGTGTGGTTGAGGC..........................................................................................................................................................2012.002.00---------------1.00-------1.00--
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGC.....................................................................7112.002.00--2.00-----------------------
.............ATGCCATGGAGTGTGGT................................................................................................................................................................1712.002.00----2.00---------------------
..............................TGAGGCTTCCACACAGCTAG............................................................................................................................................2011.001.00-------------------------1.00
.....GTAAGAACATGCCATGGAGTGTGGTTGAGGCTT........................................................................................................................................................3311.001.00---------1.00----------------
..................................................GTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAAC..................................................................7411.001.00--1.00-----------------------
................CCATGGAGTGTGGTTGAGGCTTT.......................................................................................................................................................2311.001.00-------1.00------------------
...............................GAGGCTTCCACACAGCTA.............................................................................................................................................1811.001.00--------------------1.00-----
..................ATGGAGTGTGGTTGAGGCTTCCACACA.................................................................................................................................................2711.001.00---1.00----------------------
.....................................................................................................................CTGCAACCCTGGCTTCCTCCCTTT.................................................241.000.00------------------1.00-------
.....................................................................................................................CTGCAACCCTGGCTTCCTCCCAGTTT...............................................261.000.00----------------1.00---------
..........................................................................................................................................................................ACAACAAAGTCAGCCAA...1711.001.00-----------------1.00--------
..................ATGGAGTGTGGTTGAGGCTTCC......................................................................................................................................................2211.001.00----------1.00---------------
................CCATGGAGTGTGGTTGAGGCTT........................................................................................................................................................2211.001.00-----------1.00--------------
..............TGCCATGGAGTGTGGTTGAGGCTTCC......................................................................................................................................................2611.001.00--------1.00-----------------
.....................................................................ACGGGGACCCAGGGCTAAGG.....................................................................................................201.000.00-------------------1.00------
......................................................................................................................................................CAAGGTCCTGCATGGC........................1650.200.20----0.20---------------------

Antisense strand
GCAGCGTAAGAACATGCCATGGAGTGTGGTTGAGGCTTCCACACAGCTAGGTAGGTGCTGGGTGCCAAGACGGGGACCCAGGGCTGAATTTAGGGCTCCAGAAATTGGTCATGTGACCTGCAACCCTGGCTTCCTCCCAGGCCCATCCACCAAGGTCCTGCATGGCCTCTACAACAAAGTCAGCCAATTC
.......................................................................(((((.((((((.((......((...)).......((((....))))..)).))))))..)))))......................................................
................................................................65.........................................................................140................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040018(GSM532903)
G701N. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR040008(GSM532893)
G727N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577743(Rovira)
total RNA. (breast)
.................................................................................................................................................................ATGGCCTCTACAACACGTT.......... 191.000.00------------1.00-------------
.......................................................................................................................GGAGGAAGCCAGGGTTGC..................................................... 1811.001.00-------------1.00------------
.............................................ACCCAGCACCTACCTAGC............................................................................................................................... 1811.001.00--------------1.00-----------
............................................................................................................................CCTGGCTTCCTCCCATGAG............................................... 191.000.00------1.00-------------------
............................................................................................................................................GCCCATCCACCAAGGGCAT............................... 191.000.00------------------------1.00-