ID: uc003zva.3_intron_2_0_chr9_34637418_r
GENE: (1)
chr9:34637368-34637653-


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(11)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(33)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(4)
HELA 		(10)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
XRN.ip

Sense strand
GCTCCTGGCTGTCGCAGCGGTGCTGACCCAGGTCGTCTGGCTCTGGCTGGGTACGCAGAGCTTCGTCTTCCAGCGCGAAGAGATAGCGCAGTTGGCGCGGCAGTACGCTGGTGAGCGGGCAGAGGGCAGGGAGGGGAGCGGCCGGCCTGGGAGCGGAGCCTAGGGTTCCGAAGGCGCCATCCCCGGACCTAGGACCGGTGCCAGCCCTGACTCCGCCGCCCCTCTGCCTCCGCCAGGGCTGGACCACGAGCTGGCCTTCTCTCGTCTGATCGTGGAGCTGCGGCGG
..........................................................................................................(((....)))...........(((..(((((..(((..((((.....(((((((...))))))).))))))).)))))...)))................................................................................................
..........................................................................................................107...................................................................................193...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................TGAGCGGGCAGAGGGCAGGGAGG........................................................................................................................................................2318.008.00----5.00------------------------1.00---2.00----------------------------------------------------------
...........................................................................................................................................................................AGGCGCCATCCCCGGACC.................................................................................................1816.006.00-6.00------------------------------------------------------------------------------------------
..........................................................................................GTTGGCGCGGCAGTACG...................................................................................................................................................................................1713.003.00--------------------2.00-----------------------------1.00-----------------------------------------
..............................................................................................................GTGAGCGGGCAGAGGGCAGGGAGGGGAGCGGC................................................................................................................................................3213.003.00--------------3.00-----------------------------------------------------------------------------
...................................................................................................GCAGTACGCTGGTGAGCGGGC......................................................................................................................................................................2113.003.00----------------3.00---------------------------------------------------------------------------
...................................................................................................GCAGTACGCTGGTGAGCGGG.......................................................................................................................................................................2013.003.002.00--------------------------------------------------------------1.00----------------------------
...............................................................................................................TGAGCGGGCAGAGGGCAGTTT..........................................................................................................................................................213.000.003.00-------------------------------------------------------------------------------------------
...................................................................................................................CGGGCAGAGGGCAGGGAGGGG......................................................................................................................................................2113.003.00-1.00-------------------------------------------------1.00-------------------------1.00--------------
..............................................................................................................GTGAGCGGGCAGAGGGCAGGGAGGGGAG....................................................................................................................................................2812.002.00-----------------------2.00--------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................CTGATCGTGGAGCTGCGG...1812.002.002.00-------------------------------------------------------------------------------------------
...............................................................................................................TGAGCGGGCAGAGGGCAGGGAGGT.......................................................................................................................................................2412.008.00-----2.00--------------------------------------------------------------------------------------
..............................................................................................................GTGAGCGGGCAGAGGGCAGGGA..........................................................................................................................................................2212.002.00------------1.00------------------------------1.00------------------------------------------------
.................CGGTGCTGACCCAGGTCGTCT........................................................................................................................................................................................................................................................2112.002.00--------------------------------2.00-----------------------------------------------------------
................................................................................................................GAGCGGGCAGAGGGCAGGGAGG........................................................................................................................................................2212.002.00-----2.00--------------------------------------------------------------------------------------
..............................................................................................................GTGAGCGGGCAGAGGGC...............................................................................................................................................................1712.002.00------------------------------------------------1.00------1.00------------------------------------
...............................................................................................................TGAGCGGGCAGAGGGCAGG............................................................................................................................................................1912.002.00---------2.00----------------------------------------------------------------------------------
............CGCAGCGGTGCTGACGTGC...............................................................................................................................................................................................................................................................192.000.00--------1.00-------------------------------------1.00---------------------------------------------
.......................................................................................GCAGTTGGCGCGGCAGTA.....................................................................................................................................................................................1812.002.00---------------------------2.00----------------------------------------------------------------
..................................................................................ATAGCGCAGTTGGCGCGGCAGTACGCTGGGCCG...........................................................................................................................................................................331.000.00-------------------------------------------------------------1.00------------------------------
..TCCTGGCTGTCGCAGCG...........................................................................................................................................................................................................................................................................1711.001.00---1.00----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................CGTCTGATCGTGGAGCTGCGGC..2211.001.00------1.00-------------------------------------------------------------------------------------
..............................................................................................................................CAGGGAGGGGAGCGGCCGGCCTGGGAGC....................................................................................................................................2811.001.001.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................TGCCAGCCCTGACTCCGCCGCC..................................................................2211.001.00-----1.00--------------------------------------------------------------------------------------
...........TCGCAGCGGTGCTGACCCAGGTCGTCT........................................................................................................................................................................................................................................................2711.001.00---1.00----------------------------------------------------------------------------------------
..........................................................................................................GCTGGTGAGCGGGCAGAGGG................................................................................................................................................................2011.001.00--------------------------------------------1.00-----------------------------------------------
.........................................TCTGGCTGGGTACGCAGAGCTTCGTCT..........................................................................................................................................................................................................................2711.001.00---------------1.00----------------------------------------------------------------------------
.......GCTGTCGCAGCGGTGCTGACCCAG...............................................................................................................................................................................................................................................................2411.001.00---------------------------------------1.00----------------------------------------------------
..........................................................................................................GCTGGTGAGCGGGCAGAGGGCAG.............................................................................................................................................................2311.001.001.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................TTCTCTCGTCTGATCTCGG...........191.000.00-------------------1.00------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................CTCGTCTGATCGTGGAGCTGCGGC..2411.001.00------------------1.00-------------------------------------------------------------------------
...................................................................................................................................AGGGGAGCGGCCGGCCTGG........................................................................................................................................1911.001.00---------------------1.00----------------------------------------------------------------------
......................CTGACCCAGGTCGTCTGGCTCTGGC...............................................................................................................................................................................................................................................2511.001.00------------------------1.00-------------------------------------------------------------------
...........TCGCAGCGGTGCTGACCCAGG..............................................................................................................................................................................................................................................................2111.001.00-------------1.00------------------------------------------------------------------------------
......................................................................................................GTACGCTGGTGAGCGGGCAGAGGGCAGGG...........................................................................................................................................................2911.001.00---------------1.00----------------------------------------------------------------------------
..............................................................................................................GTGAGCGGGCAGAGGGCAGGG...........................................................................................................................................................2111.001.00-----------1.00--------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................TCTGATCGTGGAGCTGCG....1811.001.00------------------1.00-------------------------------------------------------------------------
...............................................................................................CGCGGCAGTACGCTGGTG.............................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------1.00-----------
.......................................................................................................................................................................................CGGACCTAGGACCGGTGCC....................................................................................1911.001.00--------------------------------------------------------------------------------------1.00-----
....................................................................................................................................................................................................................................................................CTCGTCTGATCGTGGTTT........181.000.00------------------------------------------------------------------1.00-------------------------
................GCGGTGCTGACCCAGGTCGTCTGG......................................................................................................................................................................................................................................................2411.001.00--------1.00-----------------------------------------------------------------------------------
........................................................................................CAGTTGGCGCGGCAGTACGCTGCGA.............................................................................................................................................................................251.000.00---------------------------------------------------------------------------1.00----------------
.................................................................................................................................................................................................................ACTCCGCCGCCCCTCTGCCTCCGCCATC.................................................281.000.00-----------1.00--------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................AGGGCTGGACCACGAGCTGGC...............................2111.001.00-------------------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................................................................GCTGGACCACGAGCTGGCCTT............................2111.001.00--------------------------------------------------------------------------1.00-----------------
...................................................................................................................CGGGCAGAGGGCAGGGAGGG.......................................................................................................................................................2011.001.00----------1.00---------------------------------------------------------------------------------
..........................................CTGGCTGGGTACGCAGAGC.................................................................................................................................................................................................................................1911.001.00-------------------1.00------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................TCTGATCGTGGAGCTGCGGCGGGT241.000.00---------------------------------------------1.00----------------------------------------------
................................................................................................................................................................TAGGGTTCCGAAGGCGCC............................................................................................................1811.001.00---------------------------------------------------------------------------------1.00----------
.......................................................................................................TACGCTGGTGAGCGGGCAGAGGGC...............................................................................................................................................................2411.001.00-----------------------------------------------------1.00--------------------------------------
..............................................................................................................................CAGGGAGGGGAGCGGCCGGCCTGGTAG.....................................................................................................................................271.000.00---------------1.00----------------------------------------------------------------------------
...............AGCGGTGCTGACCCAGGTCGTCT........................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------------1.00---------------------
.........................................................................................AGTTGGCGCGGCAGTTTTT..................................................................................................................................................................................191.000.00--------------------------------------------------------1.00-----------------------------------
.........................................................................................................CGCTGGTGAGCGGGCAGAGGGCA..............................................................................................................................................................2311.001.00----------------------------------------------------------------1.00---------------------------
...................................................................................................................CGGGCAGAGGGCAGGGAGGGGAA....................................................................................................................................................231.000.00---------------------------------------------------------------------1.00----------------------
............................................................................................................................GGCAGGGAGGGGAGCGGG................................................................................................................................................181.000.00------------------------------------1.00-------------------------------------------------------
.............................................................................................................................................................................................TAGGACCGGTGCCAGCCCTGA............................................................................2111.001.00--1.00-----------------------------------------------------------------------------------------
...................................................................................................................CGGGCAGAGGGCAGGGAGG........................................................................................................................................................1911.001.00----------------------1.00---------------------------------------------------------------------
.............................................GCTGGGTACGCAGAGCTTCG.............................................................................................................................................................................................................................2011.001.001.00-------------------------------------------------------------------------------------------
..................................................................................................................GCGGGCAGAGGGCAGGGAGGG.......................................................................................................................................................2111.001.00------------------------------------------------------------------------------1.00-------------
......................................................................................................................................................................................................................................................................CGTCTGATCGTGGAGCTGCGGCGGGT261.000.00----------------------------------1.00---------------------------------------------------------
.....................................................................................................................................................................................................................................................................TCGTCTGATCGTGGAGCTGCGGC..2311.001.00------1.00-------------------------------------------------------------------------------------
.....................GCTGACCCAGGTCGTCTGG......................................................................................................................................................................................................................................................1911.001.00-------------------------------1.00------------------------------------------------------------
....................................................................TCCAGCGCGAAGAGATAG........................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------1.00---
..............................................................................................................GTGAGCGGGCAGAGGGCAGG............................................................................................................................................................2011.001.00----------------------------1.00---------------------------------------------------------------
.................................................................................................................................................................................................................ACTCCGCCGCCCCTCTGCCTCCGCCAGCT................................................291.000.00-----------1.00--------------------------------------------------------------------------------
.......................................................................................................................................................................................CGGACCTAGGACCGGTGCCA...................................................................................2011.001.00--------------------------------------------------------------1.00-----------------------------
..........................................................................................................................................................................................................................................................................TGATCGTGGAGCTGCGGC..1811.001.00----------------------------------1.00---------------------------------------------------------
.....................................................................................................AGTACGCTGGTGAGCGGGCAGAG..................................................................................................................................................................2311.001.00------------------------------------------------------1.00-------------------------------------
...............................................................................................................TGAGCGGGCAGAGGGCAGGGAG.........................................................................................................................................................2211.001.00---------1.00----------------------------------------------------------------------------------
.......................................................................................................TACGCTGGTGAGCGGGCAG....................................................................................................................................................................1911.001.00---------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................................................................................................CTCGTCTGATCGTGGAGCTGCGGCG.2511.001.00----------------------1.00---------------------------------------------------------------------
......................CTGACCCAGGTCGTCTGGCTC...................................................................................................................................................................................................................................................2111.001.00------------------------------------------1.00-------------------------------------------------
...............AGCGGTGCTGACCCAGGTCGTCTAT......................................................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------------1.00--------
........................................................................................................................................................................................................................................................................TCTGATCGTGGAGCTGCGG...1911.001.00-------------------------------------------------------------------------1.00------------------
...........................................................................................TTGGCGCGGCAGTACGCTGGG..............................................................................................................................................................................211.000.00---1.00----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................CTGATCGTGGAGCTGCGGCGG2111.001.001.00-------------------------------------------------------------------------------------------
..............CAGCGGTGCTGACCCAGGTCGTCT........................................................................................................................................................................................................................................................2411.001.00----------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................................................CTCTCGTCTGATCGTGGAGCTGCGGC..2611.001.00-------------------------------------------------1.00------------------------------------------
...............................................................................................................TGAGCGGGCAGAGGGCAGGGAGTA.......................................................................................................................................................2411.001.00-----------------------------1.00--------------------------------------------------------------
.........................................................................................................................................GCGGCCGGCCTGGGAGCGGAGCCTAGGGTTCCGAAGGCGCCATCCCCGGACCTAGGACCGGTGCCAGCCCTGACTC.........................................................................7611.001.00-----------------------------------------------------------------1.00--------------------------
.........................................................................................................................................GCGGCCGGCCTGGGAGCGGAGCC..............................................................................................................................2311.001.00-------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................CCTTCTCTCGTCTGATCGTG............2011.001.00------------------------------1.00-------------------------------------------------------------
.........................................................................................................................................................................................................................................................................CTGATCGTGGAGCTGCGGCGGGT2311.001.00------1.00-------------------------------------------------------------------------------------
................................................................................................GCGGCAGTACGCTGGTGAGCGGG.......................................................................................................................................................................2311.001.00----------------------------------------------------------------------------------1.00---------
...................................TCTGGCTCTGGCTGGTGTC........................................................................................................................................................................................................................................191.000.00----------------------------------------------------1.00---------------------------------------
.....................................................................................................................................................................................................................................................ACGAGCTGGCCTTCTCT........................1711.001.00--------1.00-----------------------------------------------------------------------------------
.......................................................................................................TACGCTGGTGAGCGGGCAGAG..................................................................................................................................................................2111.001.00--------------------------1.00-----------------------------------------------------------------
..............................................................................................................GTGAGCGGGCAGAGGGCAGGGAGGGGAGCGG.................................................................................................................................................3111.001.00------------1.00-------------------------------------------------------------------------------
.........................................................GAGCTTCGTCTTCCAGCG...................................................................................................................................................................................................................1811.001.00-------------------------------1.00------------------------------------------------------------
...................................................................................................................................................................................................................................................................TCTCGTCTGATCGTGGAGCTGCGGC..2511.001.00------------------------------------------------------------1.00-------------------------------
...............AGCGGTGCTGACCCAGCAC............................................................................................................................................................................................................................................................191.000.00-----------------1.00--------------------------------------------------------------------------
................................................................................................GCGGCAGTACGCTGGTGAGCGGGCAGAG..................................................................................................................................................................2811.001.00-----------------------------------------------------------------------1.00--------------------
............................................................................................................................................................................................................................................................GGCCTTCTCTCGTCTGATCGTGG...........2311.001.00---1.00----------------------------------------------------------------------------------------
...............AGCGGTGCTGACCCAGGTC............................................................................................................................................................................................................................................................1911.001.00-----------------1.00--------------------------------------------------------------------------
.......................................................................AGCGCGAAGAGATAGCGCAGTTGGCGCGGCAGTTT....................................................................................................................................................................................351.000.00---------------------------------------------------------------------------------------1.00----
........................................................................................................................................................................................................................................................................TCTGATCGTGGAGCTGCGGCGGCTGG261.000.001.00-------------------------------------------------------------------------------------------
......................CTGACCCAGGTCGTCTGGCTCTGGCTGGG...........................................................................................................................................................................................................................................2911.001.00------------------------------1.00-------------------------------------------------------------
................................................GGGTACGCAGAGCTTCGTCT..........................................................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------------------------------------------
.......................................................................................................TACGCTGGTGAGCGGGCAGA...................................................................................................................................................................2011.001.00--------------------------1.00-----------------------------------------------------------------
................................................................................................................................................................................................................................................................TTCTCTCGTCTGATCGTGGAGCTGCGG...2711.001.00---1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................TCGTCTGATCGTGGAGCTGCGG...2211.001.00-------------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................................................................................................TCTCGTCTGATCGTGAAC.........181.000.00------1.00-------------------------------------------------------------------------------------
...............................................................................................................TGAGCGGGCAGAGGGCAGGGAGT........................................................................................................................................................2311.001.00----------------------------------------------------------------------------1.00---------------
..............................................................................................................................CAGGGAGGGGAGCGGCCGGCCTGGGAG.....................................................................................................................................2711.001.00-----------------------------------------------1.00--------------------------------------------
....................................................................................................................................GGGGAGCGGCCGGCCCCCG.......................................................................................................................................191.000.00--1.00-----------------------------------------------------------------------------------------
...............AGCGGTGCTGACCCAGGT.............................................................................................................................................................................................................................................................1811.001.00-----------------------------------1.00--------------------------------------------------------
...................................................................................................................................AGGGGAGCGGCCGGCCGGCG.......................................................................................................................................201.000.00-----------------------------------------1.00--------------------------------------------------
....CTGGCTGTCGCAGCGGTGCTG.....................................................................................................................................................................................................................................................................2111.001.00----------------------------------------1.00---------------------------------------------------
.............................................................................................................................................................................................................................................................GCCTTCTCTCGTCTGATCGTG............2111.001.00-------------------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................................................................................CGTCTGATCGTGGAGCTGCGGCG.2311.001.00--------1.00-----------------------------------------------------------------------------------
..................................GTCTGGCTCTGGCTGGGTACGC......................................................................................................................................................................................................................................2211.001.00--1.00-----------------------------------------------------------------------------------------
.................CGGTGCTGACCCAGGTCGTCTGGCTCTGGC...............................................................................................................................................................................................................................................3011.001.00------------------------1.00-------------------------------------------------------------------
......................................................................................................GTACGCTGGTGAGCGGGCAG....................................................................................................................................................................2011.001.00--------------------------------------------------------------------1.00-----------------------
..............................................................................................................GTGAGCGGGCAGAGGGAGG.............................................................................................................................................................191.000.00------------1.00-------------------------------------------------------------------------------
..........................................................................................................GCTGGTGAGCGGGCAGAG..................................................................................................................................................................1811.001.00-------------------------1.00------------------------------------------------------------------
............................CAGGTCGTCTGGCTCTGGCTGGGTACG.......................................................................................................................................................................................................................................2711.001.00------------------------------------------------------------------------1.00-------------------
..................................................................................................................GCGGGCAGAGGGCAGGGA..........................................................................................................................................................1811.001.00----------1.00---------------------------------------------------------------------------------
...........................................................................................................CTGGTGAGCGGGCAGAGGGCAGGGAG.........................................................................................................................................................2611.001.00--------------------------------------1.00-----------------------------------------------------
...................................................................................................................CGGGCAGAGGGCAGGGA..........................................................................................................................................................1720.500.50----------0.50---------------------------------------------------------------------------------
........................................................................................................................AGAGGGCAGGGAGGGGAGC...................................................................................................................................................1920.500.50----------0.50---------------------------------------------------------------------------------
...................................................................................................................CGGGCAGAGGGCAGGGAG.........................................................................................................................................................1820.500.50-----------------------------------0.50--------------------------------------------------------
............................................................................................................................................................................................................................................................................ATCGTGGAGCTGCGG...1530.330.33------------------------------------------------------------------------------------------0.33-

Antisense strand
GCTCCTGGCTGTCGCAGCGGTGCTGACCCAGGTCGTCTGGCTCTGGCTGGGTACGCAGAGCTTCGTCTTCCAGCGCGAAGAGATAGCGCAGTTGGCGCGGCAGTACGCTGGTGAGCGGGCAGAGGGCAGGGAGGGGAGCGGCCGGCCTGGGAGCGGAGCCTAGGGTTCCGAAGGCGCCATCCCCGGACCTAGGACCGGTGCCAGCCCTGACTCCGCCGCCCCTCTGCCTCCGCCAGGGCTGGACCACGAGCTGGCCTTCTCTCGTCTGATCGTGGAGCTGCGGCGG
..........................................................................................................(((....)))...........(((..(((((..(((..((((.....(((((((...))))))).))))))).)))))...)))................................................................................................
..........................................................................................................107...................................................................................193...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................................................................TCCACGATCAGACGAGAGAAGGC.......... 2313.003.00-------3.00------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CCTCCGCCAGGGCTGGT........................................... 172.000.00--2.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................CCCTCTGCCTCCGCCATGG................................................ 192.000.00-------------2.00------------------------------------------------------------------------------
..........................................................GCGCTGGAAGACGAAGCT.................................................................................................................................................................................................................. 1811.001.001.00-------------------------------------------------------------------------------------------
.....................................................CTGGAAGACGAAGCTCTGCG..................................................................................................................................................................................................................... 2011.001.00-----------------------------------------------------------1.00--------------------------------
...........................................................................................................................................................................................................GCCCTGACTCCGCCGATT................................................................. 181.000.00-------------------------1.00------------------------------------------------------------------
............................................................................GAAGAGATAGCGCAGCTT................................................................................................................................................................................................ 181.000.00-----------------------------------------------------------------------------------------1.00--
..............................................................................................................................................................................................................................................................CACGATCAGACGAGAGAAGG............ 2011.001.00------------------------------------------------------------------------------------1.00-------
..................................................................................................................................................................................................................................CCTCCGCCAGGGCTGGC........................................... 171.000.00-------------------------------------------------------------------------------------1.00------
...................................................................................................................................................................................................................................CTCCGCCAGGGCTGGT........................................... 161.000.00----------------------------------------------------------1.00---------------------------------
...................................................................................................................................................................................................................................CTCCGCCAGGGCTGGCGG......................................... 181.000.00--1.00-----------------------------------------------------------------------------------------
.............CCTGGGTCAGCACCGCTGC.............................................................................................................................................................................................................................................................. 1911.001.00---------------------------------------------------------1.00----------------------------------
................................................................................................................................................................................................................................CAGCCCTGGCGGAGGCA............................................. 1730.330.33--0.33-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................CGGAGTCAGGGCTGG....................................................................... 1590.110.11-------------------------------------------------------------------------------------------0.11