ID: uc003ztt.2_intron_3_0_chr9_34096780_r.3p
GENE: DCAF12(5)
chr9:34096730-34096979-


(1)
AGO1.ip OTHER.mut 		(5)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(25)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(25)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TATTGCTGGCAGCCTCAATTTAATATGCCATTCAGCTAGGTTCTGTAGGGTGAAGTAATGGTCTAATAATTACTGGCACCTCTGCTGGAATCATCACGAGACAGGAATAAAGGACCCTGACCTTAGAATCCTCGCCTGCTTATTATCGTACATTAGTTGCTATAGATGATAATATAACCTGGTTTTCATTGCTCTTGTAGGAACTGGGAGCAGTGTCTCTGGATGGCTACTTTCATCTCTGGAAGGCTGA
......................................................................................................................................((....(((((((((....(((...)))...)))))))))......))....................................................................
......................................................................................................................119............................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
...........................................................................................................................TAGAATCCTCGCCTGCCACG...........................................................................................................20133.007.00--2.003.00-2.002.001.002.002.00-2.00----2.001.001.001.00-------1.00-1.00----1.00---1.001.00-----1.00-1.00--1.00----1.00-1.00--1.00--1.00-------------
...........................................................................................................................TAGAATCCTCGCCTGCCAC............................................................................................................19116.007.00--1.001.00-1.001.00-----2.00-------1.00---1.001.00------1.00---------1.00-1.00---1.00----------1.00--1.00--1.00-----------
...........................................................................................................................TAGAATCCTCGCCTGC...............................................................................................................1617.007.00-----1.00------------1.00--1.00-1.00-----------------1.00-1.00-----------------1.00---------------
...........................................................................................................................TAGAATCCTCGCCTGCC..............................................................................................................1714.007.00-------------1.001.00----------------------1.00--1.00------------------------------------
............................................................................................................................AGAATCCTCGCCTGCCAC............................................................................................................1823.001.50------0.50--0.50-------------------------------------------------------------0.500.500.50--0.50
.............................................................................................................................................................................................................GGGAGCAGTGTCTCTGGATGGCT......................2313.003.001.002.00---------------------------------------------------------------------------
...........................................................................................................................TAGAATCCTCGCCTGCCA.............................................................................................................1812.007.00---------------------------------1.00--1.00----------------------------------------
.................................................................................................................................................................................................................GCAGTGTCTCTGGATGGCTACTT..................2312.002.001.00----------------------------------------------------1.00-----------------------
.............................................................................................................................................................................................................GGGAGCAGTGTCTCTGGATGGC.......................2212.002.00-2.00---------------------------------------------------------------------------
...........................................................................................................................TAGAATCCTCGCCTG................................................................................................................1512.002.00----------------------------------------------------1.00---1.00--------------------
...............................................................................................................................................................................................................GAGCAGTGTCTCTGGATGGCTTTA...................2412.001.002.00----------------------------------------------------------------------------
............................................................................................................................AGAATCCTCGCCTGCCACG...........................................................................................................1922.001.50--0.50------------------------------------------------------------------0.50----0.500.50-
............................................................................................................................AGAATCCTCGCCTGC...............................................................................................................1521.501.50----------------------------------------------------------1.00-----------0.50------
..........................................................................................................................................................................................................ACTGGGAGCAGTGTCTCTGGATGGCTAATCT.................311.000.00----1.00------------------------------------------------------------------------
..........................................................................................................................................................AGTTGCTATAGATGATAATATAAC........................................................................2411.001.00--1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................ACTGGGAGCAGTGTCTCTGGATGGCC......................261.000.00----1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................GCAGTGTCTCTGGATGGCTACT...................2211.001.00-----------------1.00-----------------------------------------------------------
......................................................................................................................................................................................................AGGAACTGGGAGCAGTGTCTC...............................2111.001.00----------------------------1.00------------------------------------------------
...............................................................................................................................................................................................................................TGGCTACTTTCATCTCTGG........1911.001.00----------1.00------------------------------------------------------------------
.................................................................................CTGCTGGAATCATCACC........................................................................................................................................................171.000.00---------------------------------------------------1.00-------------------------
......................................................................................................................................................................................................AGGAACTGGGAGCAGTGTCTCTGGATGGCC......................301.000.00----------------------------------------------1.00------------------------------
...........................................................................................................................TAGAATCCTCGCCTGCCAAG...........................................................................................................2011.007.00--------------------------------------------------------------------1.00--------
...............................................................................................................................................................................................CTCTTGTAGGAACTGG...........................................1611.001.00--------------1.00--------------------------------------------------------------
.............................................................................................................................................................................................................GGGAGCAGTGTCTCTGGATGGCTACT...................2611.001.00--------1.00--------------------------------------------------------------------
........................................................................................................................................................................................................GAACTGGGAGCAGTGTCTCTGGATGGCTA.....................2911.001.00---------------1.00-------------------------------------------------------------
......................................................................................................................................................................................................AGGAACTGGGAGCAGTGTCTCCGG............................2411.001.00----1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................GGAACTGGGAGCAGTGTCTCTGGATGGCT......................2911.001.00-------1.00---------------------------------------------------------------------
.....................................................................................................................................................................................................................TGTCTCTGGATGGCTTTTT..................191.000.00----------1.00------------------------------------------------------------------
................................................................................................................................................................................................................AGCAGTGTCTCTGGATGGCTACT...................2311.001.00----------------------------------------------------------------1.00------------
..........................................................................................................................TTAGAATCCTCGCCTGCTTATT..........................................................................................................2211.001.00-------------1.00---------------------------------------------------------------
........................................................................................................................................................................................................GAACTGGGAGCAGTGTCTCTGGATGGCT......................2811.001.00---------------1.00-------------------------------------------------------------
...........................................................................................................................................................................................................CTGGGAGCAGTGTCTCTGGATGGC.......................2411.001.00----------------------1.00------------------------------------------------------
...................................................................................................................................................................................................................AGTGTCTCTGGATGGC.......................1611.001.00-------1.00---------------------------------------------------------------------
.......................................................................................................................................................................................................................................TTCATCTCTGGAAGGCTG.1811.001.00-------------------------------------------------------------------1.00---------
....................................................................................................................................................................................................GTAGGAACTGGGAGCAGTGTCTCTGGA...........................2711.001.00------------------------------1.00----------------------------------------------
....................................................................................................................................................................................................................GTGTCTCTGGATGGCTACTTTC................2211.001.001.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................CTGGGAGCAGTGTCTCTGGATGGCTACTTTC................3111.001.00--------------------------1.00--------------------------------------------------
...............................................................................................................................................................................................................GAGCAGTGTCTCTGGATGGCT......................2111.001.00-1.00---------------------------------------------------------------------------
........................................................................................................................................................................................................GAACTGGGAGCAGTGTCTCTGGATGGCC......................281.000.00----1.00------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGTCTCTGGATGGCTACTTTCATCTC...........2711.001.00------------------------------------------------------------------1.00----------
...................................................................................................................................................................................................................AGTGTCTCTGGATGGCTA.....................1811.001.00-------------------------------------------------1.00---------------------------
......................................................................................................................................................................................................AGGAACTGGGAGCAGTGT..................................1820.500.50----------0.50------------------------------------------------------------------
......................................................................................................................................................................................................AGGAACTGGGAGCAGT....................................1670.140.14-------------------0.14---------------------------------------------------------

Antisense strand
TATTGCTGGCAGCCTCAATTTAATATGCCATTCAGCTAGGTTCTGTAGGGTGAAGTAATGGTCTAATAATTACTGGCACCTCTGCTGGAATCATCACGAGACAGGAATAAAGGACCCTGACCTTAGAATCCTCGCCTGCTTATTATCGTACATTAGTTGCTATAGATGATAATATAACCTGGTTTTCATTGCTCTTGTAGGAACTGGGAGCAGTGTCTCTGGATGGCTACTTTCATCTCTGGAAGGCTGA
......................................................................................................................................((....(((((((((....(((...)))...)))))))))......))....................................................................
......................................................................................................................119............................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
..........................GCCATTCAGCTAGGTTCTGAA........................................................................................................................................................................................................... 211.000.00-----------------------------------1.00-----------------------------------------
..............................................................................CCTCTGCTGGAATCAGAAC......................................................................................................................................................... 191.000.00-------------------------------1.00---------------------------------------------
...........................AGAACCTAGCTGAATGG.............................................................................................................................................................................................................. 1711.001.00------------------------------------------------------1.00----------------------