ID: uc003ztq.1_intron_26_0_chr9_33998863_r.5p
GENE: UBAP2(2)
chr9:34016848-34017097-


(2)
BREAST 		(10)
CELL-LINE 		(4)
HEART 		(2)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CACAGATTTCAGCAGCACAATCAACGCAACCACAGAAACAAGTGGTACAGGTAAGTTTTTGTGGAACTCTTTTTTTTTTTTTCCTTTTTTTTCTTTTATTATTATACTTGAAGTTTTAGGGTATGTGGAACTCTTGTTTGCCTTGTTTAGAATTAAGGAAATTAAGGGAGAGCATATGATTTAATGTTTTCCTTTGTAGGAAACTTTAGGATTTTGGACCCTTTGTTTAAACAGTAGGTGATGGCCGGGT
.....................................................(((((.....)))))......................................................................................................................................................................................
..................................................51.................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR343335SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
......................................................GTTTTTGTGGAACTCTG...................................................................................................................................................................................1719.000.00---------2.00-3.00-2.001.002.002.002.00---1.00-----1.001.00--1.001.00---
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTAGC.......................................................................................................................................................2611.000.007.00--4.00--------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTAG........................................................................................................................................................256.000.001.002.002.001.00--------------------------------
................................................................................TTCCTTTTTTTTCTTTTAAATG....................................................................................................................................................224.000.00-1.002.00---1.00-----------------------------
.....ATTTCAGCAGCACAATCAACGCAA.............................................................................................................................................................................................................................2414.004.00-------4.00----------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTCATG...........................................................................................................................................................274.000.00-1.001.00---2.00-----------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTGGTC...............................................................................................................................................................244.000.003.00--1.00--------------------------------
...................................................................................CTTTTTTTTCTTTTATTATTATACTTG............................................................................................................................................2713.003.00--1.00--2.00------------------------------
................................CAGAAACAAGTGGTACAGGCAA....................................................................................................................................................................................................223.000.00-------3.00----------------------------
...................................................................................CTTTTTTTTCTTTTATTATTATACTTCAAG.........................................................................................................................................303.000.00--2.00--1.00------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTATTTCGG..................................................................................................................................................2913.001.00---3.00--------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTAAG........................................................................................................................................................263.000.00-2.00--1.00-------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTAG...........................................................................................................................................................293.000.00--1.00--2.00------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTCCAG........................................................................................................................................................233.000.00-1.001.00--1.00------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTCCCC.......................................................................................................................................................263.000.002.00--1.00--------------------------------
............CAGCACAATCAACGCAACCACA........................................................................................................................................................................................................................2212.002.00---------2.00--------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTAG............................................................................................................................................................262.000.001.00-1.00---------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCAG...........................................................................................................................................................232.000.00--1.00---1.00-----------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTTTTG.......................................................................................................................................................282.000.00-2.00----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCAG...........................................................................................................................................................262.000.002.00-----------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTTG...........................................................................................................................................................292.000.00-1.001.00---------------------------------
...............................................................................TTTCCTTTTTTTTCTTTTAAATG....................................................................................................................................................232.000.00----2.00-------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTCTG................................................................................................................................................................252.000.001.00-----1.00-----------------------------
................................................................AACTCTTTTTTTTTTTTTCCTTTG..................................................................................................................................................................242.000.00-1.00---1.00------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCAGTG.........................................................................................................................................................282.000.00---2.00--------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCAG...........................................................................................................................................................242.000.00-1.001.00---------------------------------
...............................................................................TTTCCTTTTTTTTCTTTTATTTCG...................................................................................................................................................242.000.00-2.00----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTAAG.......................................................................................................................................................252.000.00-1.001.00---------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCGAG..........................................................................................................................................................222.000.002.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTTAAG..........................................................................................................................................................292.000.00-1.00----1.00-----------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTCCCC.......................................................................................................................................................252.000.001.00--1.00--------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTCTG.............................................................................................................................................................282.000.00---2.00--------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTAAG........................................................................................................................................................272.000.00-2.00----------------------------------
............................................................................TTTTTTCCTTTTTTTTCTTTGGTT......................................................................................................................................................242.000.002.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTCC...........................................................................................................................................................272.000.001.00-1.00---------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCGAG..........................................................................................................................................................242.000.00---2.00--------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTTTAAG.....................................................................................................................................................292.000.00-1.001.00---------------------------------
.............................................................................TTTTTCCTTTTTTTTCTTTTTTAG.....................................................................................................................................................242.000.001.001.00----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTAGTA......................................................................................................................................................262.000.00---2.00--------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCAAG..........................................................................................................................................................252.000.00-1.00--1.00-------------------------------
.............................................................................TTTTTCCTTTTTTTTCTCTTG........................................................................................................................................................212.000.00-2.00----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTAG........................................................................................................................................................262.000.001.001.00----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCCC...........................................................................................................................................................232.000.002.00-----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTTAAG.......................................................................................................................................................282.000.00-1.00--1.00-------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTAAG..............................................................................................................................................................272.000.002.00-----------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTGTC......................................................................................................................................................252.000.00---2.00--------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTAG...............................................................................................................................................................262.000.001.00-1.00---------------------------------
.............................................................................TTTTTCCTTTTTTTTCTTTTCAAG.....................................................................................................................................................241.000.00-1.00----------------------------------
..............................................................................TTTTCCTTTTTTTTCTTTTAC.......................................................................................................................................................211.000.00----1.00-------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTCC..........................................................................................................................................................231.000.001.00-----------------------------------
...................................................................................CTTTTTTTTCTTTTATTATTATACCTG............................................................................................................................................271.000.00-1.00----------------------------------
.....................................................AGTTTTTGTGGAACTCTG...................................................................................................................................................................................181.000.00--------------------1.00---------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTTTCCT.....................................................................................................................................................311.000.001.00-----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTAGG...........................................................................................................................................................231.000.00-1.00----------------------------------
........................................................................................TTTTCTTTTATTATTATACTTTCAG.........................................................................................................................................251.000.00------1.00-----------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTACTC..........................................................................................................................................................251.000.00---1.00--------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTCG...........................................................................................................................................................291.000.00--1.00---------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTTCCTG..........................................................................................................................................................3111.001.00--1.00---------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCCGCT.........................................................................................................................................................221.000.001.00-----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTTGGTG.....................................................................................................................................................291.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCCGGC.........................................................................................................................................................231.000.00---1.00--------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTGGGC............................................................................................................................................................271.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTGAGG...............................................................................................................................................................241.000.001.00-----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTGTC........................................................................................................................................................291.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTAACC..........................................................................................................................................................261.000.001.00-----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCCAAG.........................................................................................................................................................281.000.00-1.00----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTCTTG...........................................................................................................................................................281.000.00-1.00----------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTTTG..........................................................................................................................................................301.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTCG...........................................................................................................................................................271.000.00--1.00---------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTCTCC............................................................................................................................................................261.000.00-1.00----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCCGGC.........................................................................................................................................................271.000.001.00-----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTG...........................................................................................................................................................261.000.00-1.00----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTTTAG.......................................................................................................................................................281.000.00--1.00---------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTTAAG.......................................................................................................................................................301.000.00--1.00---------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCGG...........................................................................................................................................................231.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTCAG...........................................................................................................................................................281.000.00--1.00---------------------------------
................................................................................TTCCTTTTTTTTCTTTTACG......................................................................................................................................................201.000.00--1.00---------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTTGTG..........................................................................................................................................................291.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTGGCA...........................................................................................................................................................281.000.001.00-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTG...............................................................................................................................................................261.000.00-1.00----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTTACT......................................................................................................................................................301.000.00---1.00--------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTAG........................................................................................................................................................231.000.00-1.00----------------------------------
.................................................................................TCCTTTTTTTTCTTTTAAATG....................................................................................................................................................211.000.00--1.00---------------------------------
........................................................................................TTTTCTTTTATTATTATACTAAG...........................................................................................................................................231.000.00--1.00---------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTAAG..............................................................................................................................................................261.000.00-1.00----------------------------------
................................................................AACTCTTTTTTTTTTTTTCCTTTTTTAG..............................................................................................................................................................281.000.00----1.00-------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTATC...........................................................................................................................................................241.000.001.00-----------------------------------
............................................................................TTTTTTCCTTTTTTTTCTTTACAG......................................................................................................................................................241.000.00--1.00---------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTG............................................................................................................................................................281.000.00--1.00---------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCACC..........................................................................................................................................................241.000.001.00-----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCCCA..........................................................................................................................................................251.000.00--1.00---------------------------------
............................................................................................................TGAAGTTTTAGGGTATGTGGAACTCTG...................................................................................................................271.000.00-------------------------1.00----------
............................................................................................................TGAAGTTTTAGGGTATGTGGAA........................................................................................................................2211.001.00------------------1.00-----------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTGGC......................................................................................................................................................251.000.001.00-----------------------------------
.............................................................................TTTTTCCTTTTTTTTCTTTTTCTG.....................................................................................................................................................241.000.00-1.00----------------------------------
............................................................................TTTTTTCCTTTTTTTTCTTTAG........................................................................................................................................................221.000.001.00-----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTCTGG........................................................................................................................................................261.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTATTC..........................................................................................................................................................281.000.001.00-----------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCCCAG.........................................................................................................................................................221.000.00--1.00---------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTGT.............................................................................................................................................................261.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTAGC.......................................................................................................................................................251.000.00---1.00--------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTTCG......................................................................................................................................................251.000.00-1.00----------------------------------
....GATTTCAGCAGCACAATC....................................................................................................................................................................................................................................1811.001.00----------------------1.00-------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTAGGC............................................................................................................................................................271.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCAAG..........................................................................................................................................................261.000.00-1.00----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCCTGA.........................................................................................................................................................231.000.001.00-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTCGA................................................................................................................................................................251.000.001.00-----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTATA...........................................................................................................................................................241.000.00-1.00----------------------------------
.ACAGATTTCAGCAGCACAATA....................................................................................................................................................................................................................................211.000.00-------------------1.00----------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTCTG........................................................................................................................................................241.000.00------1.00-----------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTTTGGC.....................................................................................................................................................291.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTGGGG...............................................................................................................................................................241.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTGAC..........................................................................................................................................................281.000.001.00-----------------------------------
..............................................................................TTTTCCTTTTTTTTCTTTTAAATG....................................................................................................................................................241.000.00----1.00-------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTAGG..........................................................................................................................................................281.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTTATTTCG...................................................................................................................................................291.000.001.00-----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCCTG..........................................................................................................................................................241.000.00-1.00----------------------------------
................................................................AACTCTTTTTTTTTTTTTCCTTCCG.................................................................................................................................................................251.000.00--1.00---------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTAAG........................................................................................................................................................281.000.00----1.00-------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTGGC.............................................................................................................................................................261.000.00---1.00--------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTGGAG.................................................................................................................................................................241.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTAAG..........................................................................................................................................................281.000.00-----1.00------------------------------
............................................................................TTTTTTCCTTTTTTTTCTCCAA........................................................................................................................................................221.000.00-----1.00------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTAAAA..........................................................................................................................................................251.000.00-----1.00------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTTTAG..........................................................................................................................................................291.000.00-1.00----------------------------------
..................................................................................CCTTTTTTTTCTTTTATTTTGG..................................................................................................................................................221.000.00-1.00----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTCCCC.......................................................................................................................................................271.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTTTC.......................................................................................................................................................291.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTTAACTG....................................................................................................................................................281.000.00-1.00----------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTCCTA..............................................................................................................................................................261.000.00------1.00-----------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCAG...........................................................................................................................................................221.000.00--1.00---------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTTC...........................................................................................................................................................291.000.001.00-----------------------------------
........................................AGTGGTACAGGTAAGTTTTT..............................................................................................................................................................................................2011.001.00-------------------1.00----------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTATT......................................................................................................................................................2511.001.001.00-----------------------------------
.............................................................................TTTTTCCTTTTTTTTCTTTTACTTG....................................................................................................................................................251.000.00--1.00---------------------------------
............................................................................TTTTTTCCTTTTTTTTCGAT..........................................................................................................................................................201.000.00----1.00-------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTTTAG..........................................................................................................................................................301.000.00-----1.00------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTAAC............................................................................................................................................................271.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTTTG.......................................................................................................................................................291.000.00-1.00----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTCCTC........................................................................................................................................................251.000.001.00-----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCAC...........................................................................................................................................................241.000.00-1.00----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTCCTG..........................................................................................................................................................291.000.001.00-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTGAGA...........................................................................................................................................................301.000.001.00-----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTTGTTG.....................................................................................................................................................281.000.00----1.00-------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTTC.............................................................................................................................................................2811.001.00-1.00----------------------------------
..............................................................................................................AAGTTTTAGGGTATGTGCAC........................................................................................................................201.000.00---1.00--------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTAAG.........................................................................................................................................................261.000.00-1.00----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTGCT..........................................................................................................................................................281.000.00----1.00-------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTTTTTAT.....................................................................................................................................................301.000.00---1.00--------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTAAG...........................................................................................................................................................281.000.00--1.00---------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTCAG............................................................................................................................................................261.000.00-1.00----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTACAG......................................................................................................................................................261.000.00--1.00---------------------------------
...............................ACAGAAACAAGTGGTACAGGCAAC...................................................................................................................................................................................................241.000.00--------------1.00---------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTATG............................................................................................................................................................261.000.001.00-----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTATA.......................................................................................................................................................261.000.001.00-----------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTTTCTTTG.........................................................................................................................................................311.000.00--1.00---------------------------------
................................................................AACTCTTTTTTTTTTTTTCCTTTTTCCCT.............................................................................................................................................................291.000.001.00-----------------------------------
............................................................................TTTTTTCCTTTTTTTTCTCCAT........................................................................................................................................................221.000.00------1.00-----------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTTGG...........................................................................................................................................................271.000.001.00-----------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTCTA................................................................................................................................................................241.000.00-----------------------1.00------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTA..........................................................................................................................................................251.000.00--1.00---------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCCG...........................................................................................................................................................251.000.00--1.00---------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTAT..........................................................................................................................................................231.000.00-----1.00------------------------------
.............................................................................................................................................................................................TCCTTTGTAGGAAACTTTAGGATTTTGGG................................291.000.00------------------1.00-----------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTCCTC............................................................................................................................................................271.000.001.00-----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTAAG.......................................................................................................................................................271.000.00-1.00----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTCTTC..........................................................................................................................................................291.000.00----1.00-------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCCAAG.........................................................................................................................................................241.000.00-1.00----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTCCGG............................................................................................................................................................271.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTCGGC.......................................................................................................................................................291.000.001.00-----------------------------------
.....................................................................................TTTTTTTCTTTTATTAGGC..................................................................................................................................................191.000.001.00-----------------------------------
...............................................................................TTTCCTTTTTTTTCTTTGTTG......................................................................................................................................................211.000.001.00-----------------------------------
............................................................................TTTTTTCCTTTTTTTTCAAGT.........................................................................................................................................................211.000.00----1.00-------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTGCGG...............................................................................................................................................................251.000.001.00-----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCGGAG.........................................................................................................................................................261.000.00---1.00--------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCCC...........................................................................................................................................................261.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCGG...........................................................................................................................................................251.000.001.00-----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTAG.........................................................................................................................................................241.000.001.00-----------------------------------
............................................................................TTTTTTCCTTTTTTTTCAAAG.........................................................................................................................................................211.000.00-1.00----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCAAAC.........................................................................................................................................................241.000.001.00-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTC..............................................................................................................................................................271.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTACCC..........................................................................................................................................................261.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTAG.........................................................................................................................................................231.000.00-1.00----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTAGGC..........................................................................................................................................................241.000.00---1.00--------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTAAG.......................................................................................................................................................291.000.00--1.00---------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTATTG..........................................................................................................................................................251.000.00-----1.00------------------------------
................................................................................TTCCTTTTTTTTCTTTTACTT.....................................................................................................................................................211.000.00-----1.00------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTAAG............................................................................................................................................................271.000.00--1.00---------------------------------
...................................................................................CTTTTTTTTCTTTTATTATTATACTCAAG..........................................................................................................................................291.000.00-1.00----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTAGAG..........................................................................................................................................................271.000.00----1.00-------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTCTAA.............................................................................................................................................................281.000.001.00-----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTAGC.......................................................................................................................................................271.000.001.00-----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCCCG..........................................................................................................................................................231.000.00-1.00----------------------------------
...............................................................................TTTCCTTTTTTTTCTTTACGG......................................................................................................................................................211.000.00-----1.00------------------------------
.........................................................................................TTTCTTTTATTATTATACTTTTAT.........................................................................................................................................241.000.00-1.00----------------------------------
.....................................................................................................................AGGGTATGTGGAACTCTTGTTTGC.............................................................................................................2411.001.00------------------------1.00-----------
............................................................................TTTTTTCCTTTTTTTTCTTCAG........................................................................................................................................................221.000.00-1.00----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCTTAAGA.......................................................................................................................................................281.000.001.00-----------------------------------
.............................................................................TTTTTCCTTTTTTTTCTTTTGG.......................................................................................................................................................221.000.00--1.00---------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCCGAG.........................................................................................................................................................261.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTAA.............................................................................................................................................................261.000.001.00-----------------------------------
.................................................................................TCCTTTTTTTTCTTTTATCTTC...................................................................................................................................................221.000.00------------------------------1.00-----
............................................................................TTTTTTCCTTTTTTTTCTTTTCAAG.....................................................................................................................................................251.000.00-1.00----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTCCC.........................................................................................................................................................271.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTTTCAG.....................................................................................................................................................271.000.00-1.00----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTGATG............................................................................................................................................................271.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTCCCT..........................................................................................................................................................281.000.00---1.00--------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCGAGG.........................................................................................................................................................231.000.001.00-----------------------------------
...................................................................................CTTTTTTTTCTTTTATTCTCG..................................................................................................................................................211.000.00-1.00----------------------------------
................................................................AACTCTTTTTTTTTTTTTCCTTTTG.................................................................................................................................................................251.000.00-1.00----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTAGG...........................................................................................................................................................251.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTCCCG............................................................................................................................................................271.000.001.00-----------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTATTTCG...................................................................................................................................................2811.001.00-1.00----------------------------------
.............................................................................TTTTTCCTTTTTTTTCTTTGGTC......................................................................................................................................................231.000.00---1.00--------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCCTC..........................................................................................................................................................221.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTTCTTCTTT.......................................................................................................................................................311.000.00--1.00---------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTTAG...........................................................................................................................................................281.000.00-----1.00------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTGG.................................................................................................................................................................241.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTCCAG............................................................................................................................................................261.000.00--1.00---------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTATT........................................................................................................................................................241.000.00---1.00--------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTTTAGG.............................................................................................................................................................271.000.00--1.00---------------------------------
.....................................................................................TTTTTTTCTTTTATTATTATACTCAAG..........................................................................................................................................271.000.00-1.00----------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTATCC..........................................................................................................................................................251.000.00---1.00--------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTCCC...........................................................................................................................................................241.000.00---1.00--------------------------------
................................................................AACTCTTTTTTTTTTTTTCGGT....................................................................................................................................................................221.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTGTG............................................................................................................................................................271.000.00----1.00-------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTAAAG..........................................................................................................................................................271.000.00------1.00-----------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTTAG.......................................................................................................................................................271.000.00--1.00---------------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTAAC......................................................................................................................................................251.000.00---1.00--------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCGC...........................................................................................................................................................261.000.001.00-----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTAGGG..........................................................................................................................................................271.000.001.00-----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCCCTC.........................................................................................................................................................241.000.001.00-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTTAGA...........................................................................................................................................................301.000.001.00-----------------------------------
...............................................................................TTTCCTTTTTTTTCTTTTAAAG.....................................................................................................................................................221.000.00--1.00---------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTGG..........................................................................................................................................................271.000.001.00-----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTTCTTG......................................................................................................................................................311.000.00----1.00-------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTTTCT......................................................................................................................................................301.000.00--1.00---------------------------------
.......................................................................TTTTTTTTTTTCCTTTTTTTTAGCC..........................................................................................................................................................251.000.001.00-----------------------------------
..............................................................................TTTTCCTTTTTTTTCTTTGTTC......................................................................................................................................................221.000.00---1.00--------------------------------
............................................................................TTTTTTCCTTTTTTTTCTTTCTAG......................................................................................................................................................241.000.00-1.00----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCAAAG.........................................................................................................................................................251.000.00----1.00-------------------------------
................................................................................TTCCTTTTTTTTCTTTTAATG.....................................................................................................................................................211.000.00----1.00-------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTTTTGG..........................................................................................................................................................311.000.001.00-----------------------------------
............................................................................TTTTTTCCTTTTTTTTCTCTAG........................................................................................................................................................221.000.00--1.00---------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTCATC...........................................................................................................................................................271.000.00-----1.00------------------------------
................................................................................TTCCTTTTTTTTCTTTACTG......................................................................................................................................................201.000.00--1.00---------------------------------
..............................................................................TTTTCCTTTTTTTTCTTTAATG......................................................................................................................................................221.000.00-1.00----------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTTAATTC....................................................................................................................................................301.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTGCA............................................................................................................................................................271.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTGGA.............................................................................................................................................................261.000.00---1.00--------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCTTTTTTTT.....................................................................................................................................................311.000.001.00-----------------------------------
...................................................................TCTTTTTTTTTTTTTCCTTTTTTTTCTTTG.........................................................................................................................................................301.000.001.00-----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTTACG............................................................................................................................................................261.000.00-1.00----------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTCGC.........................................................................................................................................................241.000.00---1.00--------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCAGC..........................................................................................................................................................221.000.001.00-----------------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTTATTTCGG..................................................................................................................................................301.000.00---1.00--------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTTCCTG..............................................................................................................................................................261.000.00------1.00-----------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTTTTTTGAG..........................................................................................................................................................311.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTACAG..........................................................................................................................................................261.000.00-1.00----------------------------------
................................................................AACTCTTTTTTTTTTTTTATAT....................................................................................................................................................................221.000.00------1.00-----------------------------
..........................................................................TTTTTTTTCCTTTTTTTTCTTTTATTTC....................................................................................................................................................281.000.001.00-----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTTCAG.......................................................................................................................................................301.000.00-1.00----------------------------------
....................................................................CTTTTTTTTTTTTTCCTTTTTTCCC.............................................................................................................................................................251.000.001.00-----------------------------------
..................................................................CTCTTTTTTTTTTTTTCCTTTCCTG...............................................................................................................................................................251.000.00------1.00-----------------------------
...........................................................................TTTTTTTCCTTTTTTTTCTTTTATTTTG...................................................................................................................................................2811.001.00--1.00---------------------------------
.............................................................................TTTTTCCTTTTTTTTCAAGT.........................................................................................................................................................201.000.00----1.00-------------------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCTTTTGC.......................................................................................................................................................271.000.00---1.00--------------------------------
................................................................AACTCTTTTTTTTTTTTTCCTGGG..................................................................................................................................................................241.000.001.00-----------------------------------
......................................................................TTTTTTTTTTTTCCTTTTTTTTCCCC..........................................................................................................................................................261.000.001.00-----------------------------------
................................................................................................................GTTTTAGGGTATGTGGAA........................................................................................................................1820.500.50-------------0.50----------------------
......................AACGCAACCACAGAAAC...................................................................................................................................................................................................................1720.500.50----------------------------------0.50-
.....................CAACGCAACCACAGAAAC...................................................................................................................................................................................................................1820.500.50---------------------------------0.50--
.................................................................ACTCTTTTTTTTTTTTTCCTTTTG.................................................................................................................................................................2450.400.200.20-0.20---------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTTAAGTG....................................................................................................................................................2930.330.33----0.33-------------------------------
.............................................................................................................................................................................................................TTAGGATTTTGGACC..............................1560.330.33---------------------0.17-------------0.17
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTTA........................................................................................................................................................2530.330.33---0.33--------------------------------
.........................................................................TTTTTTTTTCCTTTTTTTTCTTTTACG......................................................................................................................................................2730.330.33-0.33----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTCTAG..............................................................................................................................................................2750.200.20-0.20----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTT..................................................................................................................................................................2350.200.200.20-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTAAA...............................................................................................................................................................2650.200.20-0.20----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTCGAG..............................................................................................................................................................2750.200.200.20-----------------------------------
.................................................................ACTCTTTTTTTTTTTTTCCTTTTCAAG..............................................................................................................................................................2750.200.20--0.20---------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTTTTTG......................................................................................................................................................3160.170.17-0.17----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTTT.........................................................................................................................................................2860.170.17-0.17----------------------------------
.....................................................................TTTTTTTTTTTTTCCTTTTTTTTCTTTTTAG......................................................................................................................................................3160.170.17-0.17----------------------------------
............................................................................................................................................................................................................TTTAGGATTTTGGAC...............................1590.110.11----------------------0.11-------------

Antisense strand
CACAGATTTCAGCAGCACAATCAACGCAACCACAGAAACAAGTGGTACAGGTAAGTTTTTGTGGAACTCTTTTTTTTTTTTTCCTTTTTTTTCTTTTATTATTATACTTGAAGTTTTAGGGTATGTGGAACTCTTGTTTGCCTTGTTTAGAATTAAGGAAATTAAGGGAGAGCATATGATTTAATGTTTTCCTTTGTAGGAAACTTTAGGATTTTGGACCCTTTGTTTAAACAGTAGGTGATGGCCGGGT
.....................................................(((((.....)))))......................................................................................................................................................................................
..................................................51.................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR343335SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................................................................................ATGATTTAATGTTTTCCC......................................................... 184.000.00--------3.00-1.00-------------------------
..............................................................................................................................................................................TATGATTTAATGTTTTATG......................................................... 192.000.00--------1.00-1.00-------------------------
.............................................................................................................................TGGAACTCTTGTTTGCCG........................................................................................................... 181.000.00------------1.00-----------------------
........................................................................TTTTTTTTTTCCTTTTTTTTCGGG.......................................................................................................................................................... 241.000.00-----------------------------1.00------
...........................................................................................................TTGAAGTTTTAGGGTCAAG............................................................................................................................ 191.000.00----------1.00-------------------------
..................................................................................CCTTTTTTTTCTTTTACACA.................................................................................................................................................... 201.000.00------------1.00-----------------------
..............................CACAGAAACAAGTGGTAT.......................................................................................................................................................................................................... 181.000.00------------1.00-----------------------
...........................................................TGTGGAACTCTTTTTTTTTTTTTTC...................................................................................................................................................................... 251.000.00----1.00-------------------------------
......................................................................................................................GGGTATGTGGAACTCTACGA................................................................................................................ 201.000.00--------------------------1.00---------
........................................................................................................................................................................................................................................CGGCCATCACCTACT... 1540.250.25--------------------0.25---------------