ID: uc003zso.2_intron_14_0_chr9_33347116_f.3p
GENE: (15)
chr9:33347461-33347710+


(1)
AGO1.ip
(1)
AGO2.ip
(11)
CELL-LINE
(6)
HEART
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(23)
SKIN

Sense strand
TTTAAAATACCAAATTTTTTTTTAATAACCTCCTTATTCCTGCAAGAATGGCAATAATCAAAAAATAATAGATGTTGGCGTGGATGTGGTGAAAAGGGAACACTTTTACACTGCTGGTGGGAATGTAAACTAGTACAACCACTGTGGAAAACTGTGGAGATTCCTTAAAGAACTAAAAGTAGATTTACCGTTTGATCCAGCAGTCCCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAA
.............................................................................................................((((((((...((((((((((((......((((.((.....)).))))...(((......))).......))).))))).))))...))))))))..............................................
...........................................................................................................108................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR343335GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
................................................................................................................GCTGGTGGGAATGTAAACTCTG....................................................................................................................2218.000.006.004.00-2.002.00-1.00--------------1.001.00-----------1.00--------------
..............................................................................................................CTGCTGGTGGGAATGTAAACTCTG....................................................................................................................2414.000.002.001.002.002.001.00-----2.00------1.00--1.00----1.00----------1.00------------
.............................................................................................................................................................................TAAAAGTAGATTTACCGTTTGATCCAG..................................................2713.003.00-----3.00-------------------------------------------
.....................................................................................................................TGGGAATGTAAACTA......................................................................................................................1502.002.00---------2.00---------------------------------------
....................................................................................................................GTGGGAATGTAAACTCTG....................................................................................................................182.000.00----------------1.00---------------1.00----------------
...................................................................................................................GGTGGGAATGTAAACTCTG....................................................................................................................192.000.001.00-------1.00----------------------------------------
..................................................................................................................................................................................GTAGATTTACCGTTTGATCCAGCAG...............................................2512.002.00-----------1.00-----------------------------1.00-------
................................................................................................................GCTGGTGGGAATGTAAACTTTG....................................................................................................................222.000.001.00-------------------------------------1.00----------
..................................................................................................................................................................................GTAGATTTACCGTTTGATCCAG..................................................2211.001.00-------------------------------------------1.00-----
.............................................................................................................ACTGCTGGTGGGAATGTAAACTCTG....................................................................................................................251.000.00---------------------------------------1.00---------
....................................................................................TGTGGTGAAAAGGGAACTCTG.................................................................................................................................................211.000.00------------------------------1.00------------------
....................................................................................................................GTGGGAATGTAAACTACTG...................................................................................................................191.000.00--------1.00----------------------------------------
..........................................................................................................................................................................AACTAAAAGTAGATTTACCGTTTGATCCAGCAG...............................................3311.001.00------------------------1.00------------------------
................................................................................................................GCTGGTGGGAATGTAAACTAGTACTCTG..............................................................................................................281.000.00-1.00-----------------------------------------------
.................................................................................................................CTGGTGGGAATGTAAACTAGTACAACTCTG...........................................................................................................301.000.00--1.00----------------------------------------------
...............................................................................................................TGCTGGTGGGAATGTAAACTCTTG...................................................................................................................241.000.00------1.00------------------------------------------
.................................................................................................................CTGGTGGGAATGTAAACTCTG....................................................................................................................211.000.00--------------------------------------------1.00----
..............................................................................................AGGGAACACTTTTACACTG.........................................................................................................................................1901.001.00-----------1.00-------------------------------------
.................................................................................................................CTGGTGGGAATGTAAACTACTG...................................................................................................................221.000.00---------------------------1.00---------------------
............................................................................................................CACTGCTGGTGGGAATGTAAACTCTG....................................................................................................................261.000.00-----------------------------------1.00-------------
...................................................................................................................GGTGGGAATGTAAACTAGCTG..................................................................................................................211.000.00--1.00----------------------------------------------
...............................................................................................................................................GTGGAAAACTGTGGAGATTCCTTAAAG................................................................................2711.001.001.00------------------------------------------------
....................................................................................................................................................AAACTGTGGAGATTCTTAT...................................................................................191.000.00----------------------------1.00--------------------
................................................................................................................GCTGGTGGGAATGTAAACTCGG....................................................................................................................221.000.001.00------------------------------------------------
..................................................................................................................TGGTGGGAATGTAAACTCTG....................................................................................................................201.000.00------------------------------------------1.00------
...............................................................................................................TGCTGGTGGGAATGTAAACTCTG....................................................................................................................231.000.00----1.00--------------------------------------------
...................................................................................................................................................................................TAGATTTACCGTTTGATCCAG..................................................2121.001.00----------------------------------------------0.500.50-
................................................................................................................GCTGGTGGGAATGTAAACTATG....................................................................................................................221.000.00------1.00------------------------------------------
........................................................................................................................................AACCACTGTGGAAAACTGTGGAG...........................................................................................2321.001.00-----------------------1.00-------------------------
...............................................................................................GGGAACACTTTTACA............................................................................................................................................1501.001.00---------------1.00---------------------------------
..............................................................................CGTGGATGTGGTGAAAAGACC.......................................................................................................................................................211.000.00-------1.00-----------------------------------------
...........................................................................................................................................CACTGTGGAAAACTGTGGAGATTCCTTAAAG................................................................................3111.001.00-------------------------------1.00-----------------
.........................................................................................................................................................GTGGAGATTCCTTAAAGAACTCTG.........................................................................241.000.00---1.00---------------------------------------------
................................................................................................................................................................................................................................CAGAAGAAAAGAAGTCAAAG......201.000.00-------1.00-----------------------------------------
.............................................................................................................................................CTGTGGAAAACTGTGGAGAT.........................................................................................2020.500.50-------0.50-----------------------------------------
..................................................................................................................................TAGTACAACCACTGTGGAAAACTGT...............................................................................................2530.330.33------------------------------------------------0.33

Antisense strand
TTTAAAATACCAAATTTTTTTTTAATAACCTCCTTATTCCTGCAAGAATGGCAATAATCAAAAAATAATAGATGTTGGCGTGGATGTGGTGAAAAGGGAACACTTTTACACTGCTGGTGGGAATGTAAACTAGTACAACCACTGTGGAAAACTGTGGAGATTCCTTAAAGAACTAAAAGTAGATTTACCGTTTGATCCAGCAGTCCCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAA
.............................................................................................................((((((((...((((((((((((......((((.((.....)).))))...(((......))).......))).))))).))))...))))))))..............................................
...........................................................................................................108................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR343335GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.........................................................................GTTGGCGTGGATGTGTACC.............................................................................................................................................................. 192.000.00--------------2.00----------------------------------
.................................................................................................................................................................................................GATCCAGCAGTCCCACTACTTCTG................................. 242.000.00--1.00----------1.00-----------------------------------
..................................................................................................................................................................................................ATCCAGCAGTCCCACTTCTG.................................... 201.000.00-------------1.00-----------------------------------
..................................................................................................................................................................................................ATCCAGCAGTCCCACTACTGT................................... 211.000.00------------1.00------------------------------------
..................................................................................................................................................................................................ATCCAGCAGTCCCACTCTG..................................... 191.000.00-------------------1.00-----------------------------
..................................................................................................................................................................................................ATCCAGCAGTCCCACTATCTG................................... 211.000.001.00------------------------------------------------
....................................................................................................CACTTTTACACTGCTGCG.................................................................................................................................... 181.000.00--------------------------1.00----------------------
..................................................................................................................................................................................................ATCCAGCAGTCCCACTGTG..................................... 191.000.00-----1.00-------------------------------------------
............................................................................................................ATTCCCACCAGCAGTG.............................................................................................................................. 1601.001.00---------------------------------1.00---------------
............................................................................................................................GTAAACTAGTACAACCTCTG.......................................................................................................... 201.000.00----------------1.00--------------------------------
..............GGTTATTAAAAAAAAA............................................................................................................................................................................................................................ 1601.001.00---------------1.00---------------------------------
.........................................................................................................................................................................................TACCGTTTGATCCAGCAGTCCCACTGTTC.................................... 291.000.00------------1.00------------------------------------
...........................................................AAAAAATAATAGATGTTGGTTTG........................................................................................................................................................................ 231.000.00---------------------------------------------1.00---
........................................................ATCAAAAAATAATAGATGCTG............................................................................................................................................................................. 211.000.00----------------------------------------1.00--------
..................................................................................................................TGGTGGGAATGTAAACTACTGT.................................................................................................................. 221.000.00-----------------------------1.00-------------------
.............................................................................GCGTGGATGTGGTGAATCA.......................................................................................................................................................... 191.000.00------------------1.00------------------------------
....................................................................................................................................................................................................CCAGCAGTCCCACTACCTAC.................................. 201.000.00-------------------------------------1.00-----------