ID: uc003zsi.2_intron_2_0_chr9_33256907_r.5p
GENE: (5)
chr9:33258718-33258967-


(1)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(4)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TAGCTGACCAGCTGGAAGAGTTGAATAAAGAGCTTACTGGAATCCAGCAGGTAACTCTCTTCATGGACCTTAACTTTCTGCCTTCTATCAGAGCTTCCTGGATATAACTTGTGGTTATGGGGACATGTTCTGCAGTCAGACTCCCTGGGTTCAGATCCTGGATTCACCCTTTCTCTTACTGTGAACAAGTTTATCTTTGTCTCAAGTTCCTCATCTGTAAAAATGGAATAATGGTGACATTTCCCTATTA
.........................................................................................................................(((.(((((.(((((.(((.....(((((((((...))))))))).......))).)))))))))).)))...........................................................
.........................................................................................................................122..................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR189782SRR343337SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040009(GSM532894)
G727T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR343336SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................................GTTCTGCAGTCAGACGATC.........................................................................................................1912.000.00-1.001.00-2.00-3.00-------------------1.001.00-1.00------------------1.00-1.00------------
..............................................................................................................................GTTCTGCAGTCAGACGA...........................................................................................................1712.000.00-10.002.00------------------------------------------------------------
.........................................................................................................................................................................TTTCTCTTACTGTGAACG...............................................................1810.000.00---9.00--------------------------1.00--------------------------------
.........................TAAAGAGCTTACTGGAATCCAGC..........................................................................................................................................................................................................2319.009.009.00--------------------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGT...........................................................................................................176.000.00-3.003.00------------------------------------------------------------
...................................................................................................................................................GGTTCAGATCCTGGACGAG....................................................................................194.000.00-------------------------------1.00---------1.00-------------1.001.00------
..........................AAAGAGCTTACTGGAATCCAGCAG........................................................................................................................................................................................................2414.004.001.00--------2.00--------1.00--------------------------------------------
.............................................................................................................................TGTTCTGCAGTCAGACGATC.........................................................................................................204.000.00-1.00--1.00----------------------------------------------1.001.00----------
..........GCTGGAAGAGTTGAATAAAGAGCTTAC.....................................................................................................................................................................................................................2713.003.003.00--------------------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGATA.........................................................................................................193.000.00-----2.001.00--------------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACCATC.........................................................................................................192.000.00-----2.00---------------------------------------------------------
.....................TGAATAAAGAGCTTACTGGAATCCAGCA.........................................................................................................................................................................................................2812.002.002.00--------------------------------------------------------------
........................ATAAAGAGCTTACTGGAATCCAGC..........................................................................................................................................................................................................2412.002.00-------------2.00-------------------------------------------------
.....GACCAGCTGGAAGAGTTG...................................................................................................................................................................................................................................1812.002.00-------1.00--------------------1.00----------------------------------
...........CTGGAAGAGTTGAATAAAGAGCTTACTG...................................................................................................................................................................................................................2812.002.00-----------------------------------1.00-------1.00-------------------
.......................AATAAAGAGCTTACTGGAATCCAGC..........................................................................................................................................................................................................2512.002.001.00--------------1.00-----------------------------------------------
......ACCAGCTGGAAGAGTTGAATAAAGAGC.........................................................................................................................................................................................................................2711.001.00--------------1.00------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGCTG.........................................................................................................191.000.00--------------------------------1.00------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGCC..........................................................................................................181.000.00---------------------------------1.00-----------------------------
.....GACCAGCTGGAAGAGTTGAATAAAGA...........................................................................................................................................................................................................................2611.001.00---------------------------------------1.00-----------------------
........................................................................................................TAACTTGTGGTTATGGGCTAC.............................................................................................................................211.000.00----1.00----------------------------------------------------------
......ACCAGCTGGAAGAGTTGA..................................................................................................................................................................................................................................1811.001.00-------------------------------------------------1.00-------------
.....................TGAATAAAGAGCTTACTGGAATCCAGCAGGCT.....................................................................................................................................................................................................321.000.00-----------------------1.00---------------------------------------
.........AGCTGGAAGAGTTGAATAAAGAGCTTAC.....................................................................................................................................................................................................................2811.001.00----------------1.00----------------------------------------------
......................GAATAAAGAGCTTACTGGAATCCAGC..........................................................................................................................................................................................................2611.001.00---------------1.00-----------------------------------------------
...CTGACCAGCTGGAAGAGTTGAATAAAGAGC.........................................................................................................................................................................................................................3011.001.00----------------------1.00----------------------------------------
..................AGTTGAATAAAGAGCTTACTGG..................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00-----------------
..............................................................................................................................GTTCTGCAGTCAGACGC...........................................................................................................171.000.00--1.00------------------------------------------------------------
.........AGCTGGAAGAGTTGAATAAAGAGCTTA......................................................................................................................................................................................................................2711.001.00-------1.00-------------------------------------------------------
.......................AATAAAGAGCTTACTGGA.................................................................................................................................................................................................................1811.001.00-----------------------------------------------1.00---------------
...............................................................................................................................TTCTGCAGTCAGACTATC.........................................................................................................181.000.00-----1.00---------------------------------------------------------
..GCTGACCAGCTGGAAGAGTTGAA.................................................................................................................................................................................................................................2311.001.00------------------------------------1.00--------------------------
.................................................................................................CTGGATATAACTTGTG.........................................................................................................................................1611.001.00---------------------------------------------------------1.00-----
..............................................................................................................................GTTCTGCAGTCAGACGG...........................................................................................................171.000.00-1.00-------------------------------------------------------------
.............................................................................................................................TGTTCTGCAGTCAGACGATG.........................................................................................................201.000.00----1.00----------------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGCTC.........................................................................................................191.000.00------1.00--------------------------------------------------------
.......................AATAAAGAGCTTACTGGAATCCAGCAG........................................................................................................................................................................................................2711.001.00---------1.00-----------------------------------------------------
.....GACCAGCTGGAAGAGTTGAA.................................................................................................................................................................................................................................2011.001.00--------1.00------------------------------------------------------
......................GAATAAAGAGCTTACTGGAAT...............................................................................................................................................................................................................2111.001.00------------------------------------------1.00--------------------
............................AGAGCTTACTGGAATCCAGCAG........................................................................................................................................................................................................2211.001.00----------1.00----------------------------------------------------
...CTGACCAGCTGGAAGAGTTGAATA...............................................................................................................................................................................................................................2411.001.00-------------------------1.00-------------------------------------
...................GTTGAATAAAGAGCTTACTGGAATCCAGCAGGG......................................................................................................................................................................................................331.000.00--------------1.00------------------------------------------------
..GCTGACCAGCTGGAAGAGTTGAAT................................................................................................................................................................................................................................2411.001.001.00--------------------------------------------------------------
...........................AAGAGCTTACTGGAATCCAGC..........................................................................................................................................................................................................2111.001.00----------------------------------------1.00----------------------
..............................................................................................................................GTTCTGCAGTCAGACGAGC.........................................................................................................191.000.00-1.00-------------------------------------------------------------
.........................TAAAGAGCTTACTGGAATCC.............................................................................................................................................................................................................2011.001.001.00--------------------------------------------------------------
...................................................................................................................................................GGTTCAGATCCTGGAAGAG....................................................................................191.000.00----------------------------------------------1.00----------------
...............AAGAGTTGAATAAAGAGCTTACTGGAATC..............................................................................................................................................................................................................2911.001.00-----------------1.00---------------------------------------------
...............................................................................................................................TTCTGCAGTCAGACTTTC.........................................................................................................181.000.00--1.00------------------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGAC..........................................................................................................181.000.00-----------1.00---------------------------------------------------
..............................................................................................................................................................................CTTACTGTGAACAAGTT...........................................................1711.001.00--------------------------------------------1.00------------------
..............................................................................................................................GTTCTGCAGTCAGACTA...........................................................................................................171.000.00--1.00------------------------------------------------------------
.........AGCTGGAAGAGTTGAATAA..............................................................................................................................................................................................................................1921.001.00-------0.50---------------------------------------------------0.50---
.....GACCAGCTGGAAGAGTTGAATAA..............................................................................................................................................................................................................................2311.001.00-----------------------------------------------------1.00---------
...........................AAGAGCTTACTGGAATCCAGCAGGG......................................................................................................................................................................................................251.000.00--------1.00------------------------------------------------------
................................................................................................................................TCTGCAGTCAGACTCCA.........................................................................................................171.000.00-------------------------------------1.00-------------------------
.............................................................................................................................TGTTCTGCAGTCAGACGA...........................................................................................................181.000.00-----------1.00---------------------------------------------------
.......CCAGCTGGAAGAGTTGAATAAAGAGCTTACTGG..................................................................................................................................................................................................................3311.001.00------------------------------------------------------1.00--------
........CAGCTGGAAGAGTTGACAAA..............................................................................................................................................................................................................................201.000.00------------1.00--------------------------------------------------
.............................................................................CTGCCTTCTATCAGAGCTTC.........................................................................................................................................................2011.001.00--------------------1.00------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACAATT.........................................................................................................191.000.00--1.00------------------------------------------------------------
.........AGCTGGAAGAGTTGAATAAAGAGCTTACT....................................................................................................................................................................................................................2911.001.00--------1.00------------------------------------------------------
..GCTGACCAGCTGGAAGAGTTGAATA...............................................................................................................................................................................................................................2511.001.00-------1.00-------------------------------------------------------
........CAGCTGGAAGAGTTGAATAAAGAGC.........................................................................................................................................................................................................................2511.001.00-------------------1.00-------------------------------------------
........CAGCTGGAAGAGTTGAAT................................................................................................................................................................................................................................1811.001.00----------------1.00----------------------------------------------
..GCTGACCAGCTGGAAGAGTTGAATAAAGA...........................................................................................................................................................................................................................2911.001.00----------1.00----------------------------------------------------
.........AGCTGGAAGAGTTGACAAA..............................................................................................................................................................................................................................191.000.00------------1.00--------------------------------------------------
........CAGCTGGAAGAGTTGAATAAAGAGCTTA......................................................................................................................................................................................................................2811.001.00--------1.00------------------------------------------------------
..........GCTGGAAGAGTTGAATAAAGAGC.........................................................................................................................................................................................................................2311.001.00-------1.00-------------------------------------------------------
..............................................................................................................................GTTCTGCAGTCAGACGTTC.........................................................................................................191.000.00--1.00------------------------------------------------------------
.......CCAGCTGGAAGAGTTGAATAAAGAG..........................................................................................................................................................................................................................2511.001.00------------------------1.00--------------------------------------
...CTGACCAGCTGGAAGAG......................................................................................................................................................................................................................................1720.500.50-----------------0.50---------------------------------------------
.................GAGTTGAATAAAGAGCT........................................................................................................................................................................................................................1720.500.50----------------------------------------------------------0.50----
.........AGCTGGAAGAGTTGAATA...............................................................................................................................................................................................................................1830.330.33------------------------------------------------------------0.33--
.................................................................................................................................................TGGGTTCAGATCCTGGAT.......................................................................................1830.330.33-------------------------------------------------------------0.33-

Antisense strand
TAGCTGACCAGCTGGAAGAGTTGAATAAAGAGCTTACTGGAATCCAGCAGGTAACTCTCTTCATGGACCTTAACTTTCTGCCTTCTATCAGAGCTTCCTGGATATAACTTGTGGTTATGGGGACATGTTCTGCAGTCAGACTCCCTGGGTTCAGATCCTGGATTCACCCTTTCTCTTACTGTGAACAAGTTTATCTTTGTCTCAAGTTCCTCATCTGTAAAAATGGAATAATGGTGACATTTCCCTATTA
.........................................................................................................................(((.(((((.(((((.(((.....(((((((((...))))))))).......))).)))))))))).)))...........................................................
.........................................................................................................................122..................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR189782SRR343337SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040009(GSM532894)
G727T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR343336SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................................................................................................................................AAGTTCCTCATCTGTACTG............................ 191.000.00--------------------------------------1.00------------------------
.....................................................................................................................................................................................................ATGAGGAACTTGAGACA.................................... 1760.500.50----------0.17---------------------------------------------------0.33