ID: uc003zog.1_intron_31_0_chr9_20946820_f.3p
GENE: KIAA1797(32)
chr9:20948070-20948319+


(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(2)
OTHER

Sense strand
GCAGTTTATGATGCAAACCAGTCTAGATTAAAAAAAAACAAAAAACAAAAAAACACTTAAGTCTGATTTTTCATATGACAAATACAGCTTGTCATTAGGAAAGTTAGCACTAAAAGTGTTTATGTTGCTATTTATAAACATTCTAAATCTGTGTCTTTTTTTTTTCTTTTTCTTACCCCATTTTTATTTATTTATATCAGACTTCAGGTTTTGCCCTGGCTTTAGGAAACATAGTTCATGGATTGTCTGT
.........................................................................................................................................((((.........))))................................................................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189787SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
................................................................................................................................................................................CCCATTTTTATTTATTTATTTCA...................................................2312.000.00--2.005.005.00--------
......................................................................................................................................TAAACATTCTAAATCATA..................................................................................................186.000.00-----6.00-------
......................................................................................................................................TAAACATTCTAAATCATAT.................................................................................................193.000.00-------2.00---1.00-
.......................................................................................................................................................TGTCTTTTTTTTTTCTTTTTCTTTGAG........................................................................272.000.002.00------------
.......................................................................................................................................................TGTCTTTTTTTTTTCTTTTCCAG............................................................................232.000.002.00------------
.........................................................................................................................................................TCTTTTTTTTTTCTTTTTCGGTG..........................................................................231.000.00-1.00-----------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTTTC................................................................................231.000.00-1.00-----------
.........................................................................................................................................................TCTTTTTTTTTTCTTTTTCTTCCAG........................................................................251.000.00----1.00--------
.....................................................................................................................................................TGTGTCTTTTTTTTTTCTTTTTCTTTC..........................................................................271.000.00-1.00-----------
...........................................................................................................................................................TTTTTTTTTTCTTTTTCTTGGTT........................................................................231.000.001.00------------
............................................................................................................................................................TTTTTTTTTCTTTTTCTTGCCG........................................................................221.000.00-1.00-----------
.........................................................................................................................................................TCTTTTTTTTTTCTTTTTCTTGGTT........................................................................251.000.001.00------------
...........................................................................................................................................................TTTTTTTTTTCTTTTTCTTATTG........................................................................231.000.00--1.00----------
....................................................................................................................................TATAAACATTCTAAAGCAT...................................................................................................191.000.00------1.00------
...........................................................................................................................................................TTTTTTTTTTCTTTTTCTTGGTG........................................................................231.000.001.00------------
..........................................................................................................................................................CTTTTTTTTTTCTTTTTCTTAAC.........................................................................231.000.001.00------------
.................................................................................................................................................................................CCATTTTTATTTATTTATCTG....................................................211.000.00----1.00--------
................................................................................................................................................................................CCCATTTTTATTTATTTATTTTC...................................................231.000.00---1.00---------
.....................................................................................................................................................TGTGTCTTTTTTTTTTCTTTTTTTGG...........................................................................261.000.00-1.00-----------
.......................................................................................................................................................TGTCTTTTTTTTTTCTTTTTAAC............................................................................231.000.001.00------------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTTTTTCC.............................................................................261.000.00-1.00-----------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTTTTTCCCC...........................................................................281.000.001.00------------
..........................................................................................................................................................CTTTTTTTTTTCTTTTTCTTAATTG.......................................................................251.000.00----1.00--------
................................................................................AATACAGCTTGTCATTTCTG......................................................................................................................................................201.000.00------1.00------
.................................................................................................................................................................................CCATTTTTATTTATTTATTG.....................................................201.000.00------------1.00
.....................................................................................................................................................TGTGTCTTTTTTTTTTCTTTTCC..............................................................................231.000.001.00------------
...........................................................................................................................................................TTTTTTTTTTCTTTTTCTTACATG.......................................................................241.000.00----1.00--------
.............................................................................................................................................................TTTTTTTTCTTTTTCTTACATG.......................................................................221.000.00--1.00----------
...........................................................................................................................................................TTTTTTTTTTCTTTTTCTTGAC.........................................................................221.000.00-1.00-----------
...................................................................................................................................................TCTGTGTCTTTTTTTTCTCC...................................................................................201.000.001.00------------
.................................................................................................................................ATTTATAAACATTCTATTC......................................................................................................191.000.00--1.00----------
.........................................................................................................................................................TCTTTTTTTTTTCTTTTTCTTAATT........................................................................251.000.001.00------------
.................................................................................................................................................................................CCATTTTTATTTATTTATCTC....................................................211.000.00---1.00---------
..........................................................................................................................................................CTTTTTTTTTTCTTTTTCTTGCGG........................................................................241.000.001.00------------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTC..................................................................................211.000.001.00------------
............................................................................................................................................................TTTTTTTTTCTTTTTCTTGGTA........................................................................221.000.001.00------------
.........................................................................................................................................................................................................CTTCAGGTTTTGCCCTGGCTTTAGGAA......................2711.001.00----------1.00--
.......................................................................................................................................................TGTCTTTTTTTTTTCTTTTCCC.............................................................................221.000.00-1.00-----------
.......................................................................................................................................................TGTCTTTTTTTTTTCTTTTTCTGG...........................................................................241.000.001.00------------
............................................................................................................................................................TTTTTTTTTCTTTTTCTTGGTT........................................................................221.000.001.00------------
.....................................................................................................................................................TGTGTCTTTTTTTTTTCTTTTTCGAG...........................................................................261.000.001.00------------
.....................................................................................................................................................................CTTTTTCTTACCCCATTTTTT................................................................211.000.00---1.00---------
.........................................................................................................................................................TCTTTTTTTTTTCTTTTTCTTGC..........................................................................231.000.00-1.00-----------
.......................................................................................................................................................TGTCTTTTTTTTTTCTTTTTTTAT...........................................................................241.000.00-1.00-----------
.....................................................................................................................................................TGTGTCTTTTTTTTTTCTTTTTTGAG...........................................................................261.000.001.00------------
..............................................................................................................TAAAAGTGTTTATGTTGCTGTT......................................................................................................................221.000.00---------1.00---
................................................................................................................................................................................CCCATTTTTATTTATTTATTCTA...................................................231.000.00---1.00---------
............................................................................................................................................................................TTACCCCATTTTTATTTCATG.........................................................211.000.00------1.00------
.......................................................................................................................................................TGTCTTTTTTTTTTCGAA.................................................................................181.000.001.00------------
.......................................................................................................................................................................................................................CTGGCTTTAGGAAACATAGTT..............2111.001.00--------1.00----
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTTTTTTCC............................................................................2730.670.33-0.67-----------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTTTTTTTCC...........................................................................2830.330.330.33------------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCTTTTT...............................................................................2430.330.330.33------------
..............................................................................................................................................................TTTTTTTCTTTTTCTTACC.........................................................................1990.220.22--0.110.11---------
...........................................................................................................................................................TTTTTTTTTTCTTTTTCTTACC.........................................................................2250.200.200.20------------
............................................................................................................................................................TTTTTTTTTCTTTTTCTTACC.........................................................................2170.140.14----0.14--------
....................................................................................................................................................................................TTTTTATTTATTTATATC....................................................1870.140.14---0.14---------
.............................................................................................................................................................TTTTTTTTCTTTTTCTTACC.........................................................................2070.140.14--0.14----------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCC...................................................................................2080.120.120.12------------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTC....................................................................................1980.120.12-0.12-----------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCCC..................................................................................2180.120.120.12------------
...................................................................................................................................................TCTGTGTCTTTTTTTTTTCCCC.................................................................................2280.120.120.12------------

Antisense strand
GCAGTTTATGATGCAAACCAGTCTAGATTAAAAAAAAACAAAAAACAAAAAAACACTTAAGTCTGATTTTTCATATGACAAATACAGCTTGTCATTAGGAAAGTTAGCACTAAAAGTGTTTATGTTGCTATTTATAAACATTCTAAATCTGTGTCTTTTTTTTTTCTTTTTCTTACCCCATTTTTATTTATTTATATCAGACTTCAGGTTTTGCCCTGGCTTTAGGAAACATAGTTCATGGATTGTCTGT
.........................................................................................................................................((((.........))))................................................................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189787SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
...............................AAAAAAACAAAAAACAAAAAAACGAG................................................................................................................................................................................................. 264.000.002.002.00-----------
...........................TTAAAAAAAAACAAAAAACAAAAGAG..................................................................................................................................................................................................... 262.000.00--2.00----------
...............................AAAAAAACAAAAAACAAAAAAACACGAG............................................................................................................................................................................................... 282.000.001.001.00-----------
.........................GATTAAAAAAAAACAAAAAACAAAAAACTTG.................................................................................................................................................................................................. 312.000.00--2.00----------
...............................AAAAAAACAAAAAACAAAAAAACACCCC............................................................................................................................................................................................... 282.000.002.00------------
...............................AAAAAAACAAAAAACAAAAAAACACCTC............................................................................................................................................................................................... 282.000.002.00------------
.............................AAAAAAAAACAAAAAACAAAAAAACACTCTTG............................................................................................................................................................................................. 322.000.00-2.00-----------
...................................AAACAAAAAACAAAAAAACACTCT............................................................................................................................................................................................... 242.000.00-2.00-----------
...............................AAAAAAACAAAAAACAAAAAAACACGGC............................................................................................................................................................................................... 282.000.001.001.00-----------
....................................AACAAAAAACAAAAAAAAGTG................................................................................................................................................................................................. 211.000.00-1.00-----------
.....................................ACAAAAAACAAAAAAACGGC................................................................................................................................................................................................. 201.000.001.00------------
.........................GATTAAAAAAAAACAAAACACG........................................................................................................................................................................................................... 221.000.00--1.00----------
...............................AAAAAAACAAAAAACAAAAAAACTTC................................................................................................................................................................................................. 261.000.001.00------------
.............................AAAAAAAAACAAAAAACAAAAAAACACTTC............................................................................................................................................................................................... 301.000.001.00------------
...................................AAACAAAAAACAAAAAAACAGGGG............................................................................................................................................................................................... 241.000.001.00------------
.........................GATTAAAAAAAAACAAAAAACAAAAAG...................................................................................................................................................................................................... 271.000.00--1.00----------
.........................GATTAAAAAAAAACAAAAAGC............................................................................................................................................................................................................ 211.000.001.00------------
...............................AAAAAAACAAAAAACAAAAAAACACCCT............................................................................................................................................................................................... 281.000.001.00------------
..............................AAAAAAAACAAAAAACAAAAAAACACTCCA.............................................................................................................................................................................................. 301.000.001.00------------
..............................AAAAAAAACAAAAAACAAAAAAACACTA................................................................................................................................................................................................ 281.000.001.00------------
..............................AAAAAAAACAAAAAACAAAAAAACACCCTC.............................................................................................................................................................................................. 301.000.001.00------------
...........................TTAAAAAAAAACAAAAAACATC......................................................................................................................................................................................................... 221.000.001.00------------
............................TAAAAAAAAACAAAAAACAAAAAACG.................................................................................................................................................................................................... 261.000.001.00------------
...........................................AACAAAAAAACACTTGTGC............................................................................................................................................................................................ 191.000.00-1.00-----------
.................................AAAAACAAAAAACAAAAAAACACCC................................................................................................................................................................................................ 251.000.001.00------------
...............................AAAAAAACAAAAAACAAAAAAACACTTC............................................................................................................................................................................................... 281.000.001.00------------
...............................AAAAAAACAAAAAACAAAAAAACACTCCC.............................................................................................................................................................................................. 291.000.001.00------------
..............................AAAAAAAACAAAAAACAAAAAAACACTCAC.............................................................................................................................................................................................. 301.000.001.00------------
.....................................ACAAAAAACAAAAAAACACTCTGT............................................................................................................................................................................................. 241.000.001.00------------
..............................AAAAAAAACAAAAAACAAAAAAACACTCTTC............................................................................................................................................................................................. 311.000.001.00------------
..................................AAAACAAAAAACAAAAAAACGGCC................................................................................................................................................................................................ 241.000.00-1.00-----------
.........................................AAAACAAAAAAACACTAC............................................................................................................................................................................................... 181.000.00-1.00-----------
..................................AAAACAAAAAACAAAAAAACAAATC............................................................................................................................................................................................... 251.000.001.00------------
.......................................AAAAAACAAAAAAACACTCTCC............................................................................................................................................................................................. 221.000.001.00------------
....................................AACAAAAAACAAAAAAACCTGG................................................................................................................................................................................................ 221.000.001.00------------
...................................AAACAAAAAACAAAAAAACACGAG............................................................................................................................................................................................... 241.000.001.00------------
...................................AAACAAAAAACAAAAAAACACCCC............................................................................................................................................................................................... 241.000.001.00------------
........................................AAAAACAAAAAAACACTAAGG............................................................................................................................................................................................. 211.000.001.00------------
............................TAAAAAAAAACAAAAAACAAAAAAACACTTC............................................................................................................................................................................................... 311.000.001.00------------
.............................AAAAAAAAACAAAAAACAAAAAAACACC................................................................................................................................................................................................. 281.000.00-1.00-----------
...................................AAACAAAAAACAAAAAAACACTCTTG............................................................................................................................................................................................. 261.000.00-1.00-----------
...................................AAACAAAAAACAAAAAAACCCC................................................................................................................................................................................................. 221.000.00-1.00-----------
.........................GTTTTTTGTTTTTTTTTAATC............................................................................................................................................................................................................ 2170.140.140.14------------