ID: uc003zke.2_intron_3_0_chr9_6720998_f.5p
GENE: (4)
chr9:6720948-6721197+


(2)
AGO2.ip
(1)
BRAIN
(4)
BREAST
(12)
CELL-LINE
(1)
HEART
(5)
LIVER
(2)
OTHER
(7)
SKIN
(1)
TESTES

Sense strand
GATGAAGCACTATGGGCTGCCCTGGAAGAGGACTGAAGAAGCAGCTGCAGGTGAGTGCTGCTCTGAACATAATCCAGGACACTTTGTACATAGTTGGTGGTTCTGTCACACTTAAAGCAATGTTAATTTCTTTATTTTTATTTTTTTAGAATCAAGGTCTCTGTTGCCCAGGCTAGAGGGCAGTGGTGCAATCACACCTCACTGCAGCCTCAACATCCCAGGCTCAGGTGATTCTCCCACCCCAGTCTTC
.................................................................................................((((((((.......(((((.(((....))).)))))............))))))))................................................................................................
.....................................................................................86...................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
......................TGGAAGAGGACTGAAGAAGCAGCTGC..........................................................................................................................................................................................................26152.0052.0052.00--------------------------------
.................................................................................................................................CTTTATTTTTATTTTTTTCTAG...................................................................................................2224.000.00-13.00-6.002.00-3.00--------------------------
......................TGGAAGAGGACTGAAGAAGCAGCT............................................................................................................................................................................................................2416.006.006.00--------------------------------
.............................................................................................................................ATTTCTTTATTTTTATTTTTTTAG.....................................................................................................2414.004.00-2.00-1.001.00----------------------------
..........................................................................................TAGTTGGTGGTTCTGTTG..............................................................................................................................................183.000.00------------1.00----------1.00-1.00-------
......................TGGAAGAGGACTGAAGAAGCAGCTGT..........................................................................................................................................................................................................263.000.003.00--------------------------------
......................TGGAAGAGGACTGAAGAAGCAGCTCC..........................................................................................................................................................................................................2612.006.002.00--------------------------------
...................CCCTGGAAGAGGACTGAAGAAGCA...............................................................................................................................................................................................................2412.002.00-------------2.00-------------------
.........CTATGGGCTGCCCTGGAAGAGGACTGAAGAAGCAG..............................................................................................................................................................................................................3512.002.00--2.00------------------------------
.................................................................................................................................CTTTATTTTTATTTTTTTCTA....................................................................................................212.000.00-1.00-1.00-----------------------------
...............................................................................................................................................................................................TCACACCTCACTGCAGCCTCAGAG...................................242.000.00-----2.00---------------------------
.................TGCCCTGGAAGAGGACTGAAGAAGCAGCTGA..........................................................................................................................................................................................................311.000.001.00--------------------------------
...........................................................................................................................TAATTTCTTTATTTTTATTTTTTCAG.....................................................................................................261.000.00----1.00----------------------------
.................................................................................................................................CTTTATTTTTATTTTTTTCCAG...................................................................................................221.000.00------1.00--------------------------
......................TGGAAGAGGACTGAAGAAGCAGCTGCAGTT......................................................................................................................................................................................................301.000.001.00--------------------------------
................................................................................................................................TCTTTATTTTTATTTTTTCCAG....................................................................................................221.000.00----1.00----------------------------
................................................................................................................................TCTTTATTTTTATTTTTTCAAG....................................................................................................221.000.00-1.00-------------------------------
.......................................................................................................................................................................................................................TCCCAGGCTCAGGTGATTCCGCC............231.000.00-------1.00-------------------------
.....AGCACTATGGGCTGCCCTGGAAGAGGACTGAAGA...................................................................................................................................................................................................................3411.001.00--1.00------------------------------
.................................TGAAGAAGCAGCTGCCCAC......................................................................................................................................................................................................191.000.00-----------------------------1.00---
...................CCCTGGAAGAGGACTGAAGAAGCAG..............................................................................................................................................................................................................2511.001.001.00--------------------------------
............................AGGACTGAAGAAGCAGCTGCAGAA......................................................................................................................................................................................................241.000.00----------1.00----------------------
.........................AAGAGGACTGAAGAAGCAGCTGCAGG.......................................................................................................................................................................................................2611.001.00--1.00------------------------------
..........TATGGGCTGCCCTGGAAGAGGACTGA......................................................................................................................................................................................................................2611.001.001.00--------------------------------
.................................................................................................................................................................................................ACACCTCACTGCAGCCT........................................1701.001.00---------------------1.00-----------
...................CCCTGGAAGAGGACTGAAGAAGCAGCTGCAT........................................................................................................................................................................................................311.000.001.00--------------------------------
......................TGGAAGAGGACTGAAGAAGCAGCTGCAGGA......................................................................................................................................................................................................3011.001.001.00--------------------------------
......................TGGAAGAGGACTGAAGAAGCAGCTGCAGA.......................................................................................................................................................................................................291.000.001.00--------------------------------
........................................................................................................................................................................CAGGCTAGAGGGCAGTGGAGG.............................................................211.000.00---------------------------1.00-----
............................AGGACTGAAGAAGCAGCTGCAGGCA.....................................................................................................................................................................................................251.000.00----------1.00----------------------
..........TATGGGCTGCCCTGGAAGAGGA..........................................................................................................................................................................................................................2211.001.00-----------------1.00---------------
......................TGGAAGAGGACTGAAGAAGCAGCTAC..........................................................................................................................................................................................................2611.006.001.00--------------------------------
.........................AAGAGGACTGAAGAAGCAGC.............................................................................................................................................................................................................2011.001.00--1.00------------------------------
...................CCCTGGAAGAGGACTGAAGAAGCAGCT............................................................................................................................................................................................................2711.001.001.00--------------------------------
........................GAAGAGGACTGAAGAAGCAGCTGCAGA.......................................................................................................................................................................................................271.000.001.00--------------------------------
.................TGCCCTGGAAGAGGACTGAAGAAGC................................................................................................................................................................................................................2511.001.00--1.00------------------------------
......................TGGAAGAGGACTGAAGAAGCAGCTGCAGG.......................................................................................................................................................................................................2911.001.001.00--------------------------------
...........................GAGGACTGAAGAAGCAGCTGCAGGAA.....................................................................................................................................................................................................261.000.001.00--------------------------------
...................CCCTGGAAGAGGACTGAAGAAGCAGC.............................................................................................................................................................................................................2611.001.001.00--------------------------------
......................TGGAAGAGGACTGAAGAAGCAGCTGA..........................................................................................................................................................................................................261.000.001.00--------------------------------
......................TGGAAGAGGACTGAAGAAGCAGC.............................................................................................................................................................................................................2311.001.001.00--------------------------------
.................................................................................................................................CTTTATTTTTATTTTTTCTAG....................................................................................................211.000.00-1.00-------------------------------
.............................................................................................................................ATTTCTTTATTTTTATTTTTTTAAG....................................................................................................251.000.00----1.00----------------------------
......................TGGAAGAGGACTGAAGAAGCAG..............................................................................................................................................................................................................2211.001.001.00--------------------------------
.................................................................................................................................CTTTATTTTTATTTTTTTCTAT...................................................................................................221.000.00-1.00-------------------------------
..........TATGGGCTGCCCTGGAAGAGGACTGAAGA...................................................................................................................................................................................................................2911.001.001.00--------------------------------
.....................CTGGAAGAGGACTGAAGAAGCAGCTGCAGT.......................................................................................................................................................................................................301.000.001.00--------------------------------
.....................CTGGAAGAGGACTGAAGAAGCAGCT............................................................................................................................................................................................................2511.001.001.00--------------------------------
............................................................................................................................AATTTCTTTATTTTTATTTTTTTTT.....................................................................................................251.000.00-------1.00-------------------------
........................................................................................CATAGTTGGTGGTTCGGGC...............................................................................................................................................191.000.00------------------------1.00--------
............TGGGCTGCCCTGGAAGAGGACTGAAGA...................................................................................................................................................................................................................2711.001.001.00--------------------------------
..........................................................................................................................TTAATTTCTTTATTTTTATCTG..........................................................................................................221.000.00-1.00-------------------------------
......................TGGAAGAGGACTGAATTTA.................................................................................................................................................................................................................191.000.00----------------------1.00----------
...........ATGGGCTGCCCTGGAAGAGGAC.........................................................................................................................................................................................................................2211.001.00---------1.00-----------------------
......................TGGAAGAGGACTGAAGAAGCAGCTGCA.........................................................................................................................................................................................................2711.001.001.00--------------------------------
......................................................................................................................................................................CCCAGGCTAGAGGGCAGTGG................................................................2001.001.00----------------------------1.00----
..............................................................................................................................................................CTCTGTTGCCCAGGCTAGAGGGCAGCG.................................................................271.000.00-------------------------------1.00-
......................................................................................................................................................................CCCAGGCTAGAGGGCGGCA.................................................................191.000.00-------1.00-------------------------
.................................TGAAGAAGCAGCTGCAGGA......................................................................................................................................................................................................191.000.00---------1.00-----------------------
........ACTATGGGCTGCCCTGGAAGAGGACTGAAGAAGC................................................................................................................................................................................................................3411.001.00--1.00------------------------------
.......................GGAAGAGGACTGAAGAAGCAGCTGCAG........................................................................................................................................................................................................2711.001.00--1.00------------------------------
.................TGCCCTGGAAGAGGACTGAAGAAGCA...............................................................................................................................................................................................................2611.001.001.00--------------------------------
.................................................................................................................................CTTTATTTTTATTTTTTTCTAA...................................................................................................221.000.00------1.00--------------------------
..........................................................................................TAGTTGGTGGTTCTGTGG..............................................................................................................................................181.000.00------------1.00--------------------
............................AGGACTGAAGAAGCAGCTGCAGGAA.....................................................................................................................................................................................................251.000.00--------1.00------------------------
........................................................................................................................................................................CAGGCTAGAGGGCAGTGGTTTGT...........................................................231.000.00-----------1.00---------------------
............................AGGACTGAAGAAGCAG..............................................................................................................................................................................................................1690.110.11--------------------------------0.11

Antisense strand
GATGAAGCACTATGGGCTGCCCTGGAAGAGGACTGAAGAAGCAGCTGCAGGTGAGTGCTGCTCTGAACATAATCCAGGACACTTTGTACATAGTTGGTGGTTCTGTCACACTTAAAGCAATGTTAATTTCTTTATTTTTATTTTTTTAGAATCAAGGTCTCTGTTGCCCAGGCTAGAGGGCAGTGGTGCAATCACACCTCACTGCAGCCTCAACATCCCAGGCTCAGGTGATTCTCCCACCCCAGTCTTC
.................................................................................................((((((((.......(((((.(((....))).)))))............))))))))................................................................................................
.....................................................................................86...................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
......................................................................................................................................................................................................................................ATTCTCCCACCCCAGTCTG. 194.000.00-----------1.00----1.00--1.00----------1.00--
..................................................................................................................................................................................................CACCTCACTGCAGCCTCAACCG.................................. 223.000.00-----3.00---------------------------
...............................................................................................................................................................................................................................TCAGGTGATTCTCCCACCCCAGTCTATA 281.000.00--------1.00------------------------
.............................................................................................TTGGTGGTTCTGTCACAGC.......................................................................................................................................... 191.000.00------------------1.00--------------
..........................................................................................................................................................................................................................CAGGCTCAGGTGATTCTAG............. 191.000.00--------------------1.00------------
....................................................................................................................................................CCTCTAGCCTGGGCAACAGAGACCTTGATTC....................................................................... 3111.001.00--------------------------1.00------
......................................................................................................................................................................................................................................ATTCTCCCACCCCAGTCTTCTG 221.000.00--------------1.00------------------
................................................AGGTGAGTGCTGCTCAGTG....................................................................................................................................................................................... 191.000.00---------------1.00-----------------