ID: uc003zjh.2_intron_14_0_chr9_5754931_f.3p
GENE: (15)
chr9:5756012-5756261+


(2)
B-CELL
(1)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(2)
HELA
(1)
KIDNEY
(1)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
TGCTTACTCATAGAATGAGCCTAGTCTGCAAAAATATGTAAACATAATCCATTTACTGTTAAAGCTTAGATAGTTCTTTTAACTCCTGTTACTAAAAAAAAAAAAAAAAGTCGGAAGTTAAAAACAGCATGTTTAAAGTATTTGGTCATCCCTAGTAGTTATCTTGTTTTTATAATTTTCTTCATTTTTGTTTTCTTCAGCTTAGAGTATACTTGCGAACATCAAATCTGGACAATGCCTTTGCTCATGT
...................................................................................................((((.(((((...(((((.(((((((((.((.....((.((((.((.....)).)))).)))).)))))))))....)))))...))))).))))........................................................
........................................................................................89.......................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
.............................................................................................AAAAAAAAAAAAAAAAGTCGGATTGT...................................................................................................................................2649.000.0049.00-------------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGATGT....................................................................................................................................2538.000.0038.00-------------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGTGT.....................................................................................................................................2424.000.0024.00-------------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGTGT.....................................................................................................................................2320.000.0020.00-------------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGATTGT...................................................................................................................................2512.000.0012.00-------------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGATGT....................................................................................................................................2311.000.0011.00-------------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGATGT....................................................................................................................................248.000.008.00-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAAAAGT...........................................................................................................................................2417.007.007.00-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAAAGT............................................................................................................................................235.000.005.00-------------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGATTGT...................................................................................................................................244.000.004.00-------------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGTGG.....................................................................................................................................233.000.003.00-------------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGAAGG....................................................................................................................................253.000.003.00-------------------------
...........................................................................................................................................................................ATAATTTTCTTCATTATTG............................................................193.000.00------3.00-------------------
.......................................................................................GTTACTAAAAAAAAAAAAAAGT.............................................................................................................................................223.000.003.00-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAAAATGT..........................................................................................................................................252.000.002.00-------------------------
................................................................................................AAAAAAAAAAAAAGTCGGATTGT...................................................................................................................................232.000.002.00-------------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGAGGT....................................................................................................................................252.000.002.00-------------------------
.......................................................................................................................................................................TTTTATAATTTTCTTCATTTTTGTTT.........................................................2611.001.00-------------------1.00------
....................................................................................................AAAAAAAAAGTCGGATTGT...................................................................................................................................191.000.001.00-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAATGT............................................................................................................................................231.000.001.00-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAACG.............................................................................................................................................221.000.001.00-------------------------
....................................TGTAAACATAATCCATTCAC..................................................................................................................................................................................................201.000.00------1.00-------------------
....................................TGTAAACATAATCCACTGG...................................................................................................................................................................................................191.000.00------------------------1.00-
..............................................................................................AAAAAAAAAAAAAAAGTCGGAGGT....................................................................................................................................241.000.001.00-------------------------
.......TCATAGAATGAGCCTCGTA................................................................................................................................................................................................................................191.000.00-------1.00------------------
.....................................................................................................................................................................................................................TGCGAACATCAAATCTGGACAATGC............2511.001.00----------------------1.00---
.................................................................................................AAAAAAAAAAAAGTCGGTG......................................................................................................................................191.000.00-------------------------1.00
...........................................................................................................................................................................ATAATTTTCTTCATTTTAACT..........................................................211.000.00-1.00------------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGAATGGG..................................................................................................................................271.000.001.00-------------------------
.............................................................................................................................................................................................................................TCAAATCTGGACAATGCCTTTGC......2311.001.00---------------1.00----------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGATGGT...................................................................................................................................261.000.001.00-------------------------
............................................................................................................................CAGCATGTTTAAAGTTGGT...........................................................................................................191.000.00-------------1.00------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGATTGC...................................................................................................................................261.000.001.00-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAAGG.............................................................................................................................................221.000.001.00-------------------------
.................................................................................................AAAAAAAAAAAAGTCGGATTGT...................................................................................................................................221.000.001.00-------------------------
....................................................................................................................................................................................TTCATTTTTGTTTTCGTG....................................................181.000.00-----1.00--------------------
....................................TGTAAACATAATCCACGG....................................................................................................................................................................................................181.000.00------------1.00-------------
............................................................................................................................CAGCATGTTTAAAGTTGG............................................................................................................181.000.00-----------------1.00--------
.............................................................................................................................................................................................................AGTATACTTGCGAACATCAAATCTG....................2511.001.00--------------------1.00-----
.............................................................................................AAAAAAAAAAAAAAAAGTCGCTGT.....................................................................................................................................241.000.001.00-------------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGCTGT.....................................................................................................................................231.000.001.00-------------------------
......................................................................................................................................................................................................AGCTTAGAGTATACTTGCGAACATC...........................2511.001.00--------------1.00-----------
...............................................................................................AAAAAAAAAAAAAAGTCGGTGT.....................................................................................................................................221.000.001.00-------------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGACGAT...................................................................................................................................241.000.00------------------1.00-------
........................................................................................................................................................................................TTTTTGTTTTCTTCAGAG................................................181.000.00----1.00---------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGAGGGT...................................................................................................................................261.000.001.00-------------------------
......................................................................................................................................................................TTTTTATAATTTTCTTTGC.................................................................191.000.00---------1.00----------------
................................................................................................................................................................................................................................AATCTGGACAATGCCTTTGCT.....2111.001.00-----------------------1.00--
......................................................................................................................................................................TTTTTATAATTTTCTTCATTTCTG............................................................241.000.00--------1.00-----------------
.....................................................................................................................................................................................................................TGCGAACATCAAATCTGGACAATG.............2411.001.00----------------1.00---------
...TTACTCATAGAATGAGCCT....................................................................................................................................................................................................................................1911.001.00---------------------1.00----
.................................................................TTAGATAGTTCTTTTAAT.......................................................................................................................................................................181.000.00---------1.00----------------
.......................................................................................GTTACTAAAAAAAAAAAAAAAAG............................................................................................................................................2320.500.500.50-------------------------
.......................................................................................GTTACTAAAAAAAAAAAAAAAAGG...........................................................................................................................................2420.500.500.50-------------------------

Antisense strand
TGCTTACTCATAGAATGAGCCTAGTCTGCAAAAATATGTAAACATAATCCATTTACTGTTAAAGCTTAGATAGTTCTTTTAACTCCTGTTACTAAAAAAAAAAAAAAAAGTCGGAAGTTAAAAACAGCATGTTTAAAGTATTTGGTCATCCCTAGTAGTTATCTTGTTTTTATAATTTTCTTCATTTTTGTTTTCTTCAGCTTAGAGTATACTTGCGAACATCAAATCTGGACAATGCCTTTGCTCATGT
...................................................................................................((((.(((((...(((((.(((((((((.((.....((.((((.((.....)).)))).)))).)))))))))....)))))...))))).))))........................................................
........................................................................................89.......................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
............................................................................................TAAAAAAAAAAAAAAAAGTTTAG....................................................................................................................................... 236.000.00-3.001.001.00-1.00--------------------
............................................................................................TAAAAAAAAAAAAAAAAGTTAAG....................................................................................................................................... 235.000.00--4.00--------1.00--------------
...........................................................................................CTAAAAAAAAAAAAAAAAGTGGG........................................................................................................................................ 233.000.00---1.002.00---------------------
............................................................................................TAAAAAAAAAAAAAAAAGTTCCG....................................................................................................................................... 233.000.00-2.001.00-----------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGAAGTT................................................................................................................................... 262.000.00---2.00----------------------
..................................................................................................AAAAAAAAAAAGTCGGAAAG.................................................................................................................................... 202.000.00--1.00-----1.00-----------------
............................................................................................TAAAAAAAAAAAAAAAAGTCGAAG...................................................................................................................................... 242.000.00-1.001.00-----------------------
............................................................................................TAAAAAAAAAAAAAAAAGTTCTG....................................................................................................................................... 232.000.00--1.00-1.00---------------------
............................................................................................TAAAAAAAAAAAAAAAAGTTTCA....................................................................................................................................... 232.000.00-1.001.00-----------------------
..........................................................................................ACTAAAAAAAAAAAAAAAAGTCTGC....................................................................................................................................... 252.000.00----2.00---------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGCA...................................................................................................................................... 211.000.00-1.00------------------------
............................................................................................TAAAAAAAAAAAAAAAAGTCGGAT...................................................................................................................................... 241.000.00-----------1.00--------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGAATTTT.................................................................................................................................. 271.000.00---1.00----------------------
...........................................................................................CTAAAAAAAAAAAAAAAAGTGAC........................................................................................................................................ 231.000.00---1.00----------------------
................................................................................................AAAAAAAAAAAAAGTCGGAGG..................................................................................................................................... 211.000.00----1.00---------------------
..................................................................................................AAAAAAAAAAAGTCGGAAATT................................................................................................................................... 211.000.00-----1.00--------------------
............................................................................................TAAAAAAAAAAAAAAAAGTTGGT....................................................................................................................................... 231.000.00----1.00---------------------
...........................................................................................CCGACTTTTTTTTTTTTTTTTAG........................................................................................................................................ 2311.001.00-1.00------------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGGGTG.................................................................................................................................... 231.000.00----1.00---------------------
...........................................................................................CTAAAAAAAAAAAAAAAAGTGAAG....................................................................................................................................... 241.000.00----1.00---------------------
..........................................................................................ACTAAAAAAAAAAAAAAAAGTCTG........................................................................................................................................ 241.000.00---1.00----------------------
................................................................................................AAAAAAAAAAAAAGTCGGACTTG................................................................................................................................... 231.000.00---1.00----------------------
...........................................................................................CTAAAAAAAAAAAAAAAAGTGACG....................................................................................................................................... 241.000.00---1.00----------------------
.............................................................................................ACTTCCGACTTTTTTTTTTTTTTTT.................................................................................................................................... 2511.001.00---1.00----------------------
................................................................................................AAAAAAAAAAAAAGTCGATG...................................................................................................................................... 201.000.00-1.00------------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGACTTT................................................................................................................................... 241.000.00----1.00---------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGAAGG.................................................................................................................................... 231.000.00--1.00-----------------------
..........................................................................................ACTAAAAAAAAAAAAAAAAGTCAA........................................................................................................................................ 241.000.00-1.00------------------------
.............................................................................................................GTCGGAAGTTAAAAAGATC.......................................................................................................................... 191.000.00----------1.00---------------
...........................................................................................CTAAAAAAAAAAAAAAAAGTGGGC....................................................................................................................................... 241.000.00----1.00---------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGAATG.................................................................................................................................... 241.000.00-1.00------------------------
.............................................................................................................GTCGGAAGTTAAAAAGCTC.......................................................................................................................... 191.000.00----------1.00---------------
............................................................................................TAAAAAAAAAAAAAAAAGTTCG........................................................................................................................................ 221.000.00-----1.00--------------------
...........................................................................................................................ACAGCATGTTTAAAGATAG............................................................................................................ 191.000.00------1.00-------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGAAAAG................................................................................................................................... 251.000.00--1.00-----------------------
............................................................................................TAAAAAAAAAAAAAAAAGTCGGAG...................................................................................................................................... 241.000.00-1.00------------------------
................................................................................................AAAAAAAAAAAAAGTCGAAAG..................................................................................................................................... 211.000.00--1.00-----------------------
................................................................................................AAAAAAAAAAAAAGTCGGAACTG................................................................................................................................... 231.000.00-1.00------------------------
...............................................................................................AAAAAAAAAAAAAAGTCGGACTG.................................................................................................................................... 231.000.00---1.00----------------------
..................................................................................................AAAAAAAAAAAGTCGGCTTG.................................................................................................................................... 201.000.00--------1.00-----------------
............................................................................................TAAAAAAAAAAAAAAAAGTCGT........................................................................................................................................ 221.000.00--1.00-----------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGAAAT..................................................................................................................................... 231.000.00-1.00------------------------
..............................................................................................AAAAAAAAAAAAAAAGTCGGACTG.................................................................................................................................... 241.000.00--1.00-----------------------
.............................................................................................................GTCGGAAGTTAAAAAGACT.......................................................................................................................... 191.000.00-------1.00------------------
..................................................................................................AAAAAAAAAAAGTCGGAAGTCCA................................................................................................................................. 231.000.00---1.00----------------------
............................................................................................TAAAAAAAAAAAAAAAAGTCGGAAAAG................................................................................................................................... 271.000.00-----1.00--------------------
.................................................................................................AAAAAAAAAAAAGTCGGAAAT.................................................................................................................................... 211.000.00-1.00------------------------
.............................................................................................................GTCGGAAGTTAAAAAGGCT.......................................................................................................................... 191.000.00-------1.00------------------
......................................................................................................AAAAAAAGTCGGAAGTTAAAAACAG........................................................................................................................... 251.000.00-----1.00--------------------
.............................................................................................AAAAAAAAAAAAAAAAGTCGGACTG.................................................................................................................................... 251.000.00---1.00----------------------
...........................................................................................CGACTTTTTTTTTTTTTTTTAG......................................................................................................................................... 2230.330.33-0.33------------------------
.....................................................................................TTTTTTTTTTTTTTTTAGTAACAG............................................................................................................................................. 2440.250.25-----0.25--------------------