ID: uc003zis.2_intron_4_0_chr9_4834266_f.3p
GENE: RCL1(5)
chr9:4841032-4841281+


(1)
AGO2.ip
(2)
B-CELL
(2)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(3)
HEART
(2)
HELA
(1)
KIDNEY
(6)
LIVER
(1)
OTHER
(25)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
TTTGGGTGTTTTTGCCATGACCTTTTATAATAATGAAAAAAATTTAATTATGGTACTAATTCAGTAAATTCAGTTGGAAAACAATAGATTTGGAAGTCCCAGTTTGTTACTACAGTTCCACAAATACTTGCCAGCTTTATAACTGATTTTTCTCTGTCCTGGAATTCAAGCAGAATGACATCCTTAACTCCAGGCTGCAGGTACTCTGTACGTGTGTCACCTCAGATGGCGAACCGGATTGTGGATTCTG
............................................................................................(((.(((..((((((.((....))...))))))......(((........)))...............))).)))..((((..((.............))..))))....................................................
............................................................................................93.........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925PAZD5
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGA.................................................221111.007.00103.00----------1.00-1.00-------1.00---1.00------1.00-----------1.00-------1.00--------1.00--
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAGA.................................................23136.005.0031.00----------------------1.00----1.00--1.00--------------1.001.00----------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAA................................................23121.007.0018.00-----2.00---------------------------------1.00-----------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAAA...............................................24119.007.007.00--7.004.00---------------1.00-------------------------------------------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAGAA................................................24114.005.0012.00----------------------------1.00------------------1.00---------------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAGAAA...............................................25110.005.008.00---------1.00--------------------------------------1.00--------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAAAA..............................................2517.007.007.00---------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAG..................................................2117.007.004.00-------------2.00---------1.00---------------------------------------
..............................................................................................................................................................................................................................CAGATGGCGAACCGGATTGTGGAT....2416.006.00--5.00--------1.00----------------------------------------------------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAG..................................................2215.005.002.00-----1.00----------1.00-----------------------------------------1.00----
.............................................................................................................................................................................................................................TCAGATGGCGAACCGGATTGTGGATT...2613.003.00-3.00--------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAAGA..............................................2513.007.003.00---------------------------------------------------------------
...............................................................................................................................................................................................................................AGATGGCGAACCGGATTGTGGATTC..2513.003.00-2.00-------------------------------1.00------------------------------
.....................................................................................................................................................................................................................................CGAACCGGATTGTGGAT....1713.003.00--3.00-------------------------------------------------------------
.............................................................................................................................................................................................................................TCAGATGGCGAACCGGATTGTGGAT....2513.003.00-3.00--------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAAT...............................................2413.007.003.00---------------------------------------------------------------
..............................................................................................................................................................................................................................CAGATGGCGAACCGGATTGTGGATTC..2613.003.00-2.00---1.00----------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAC................................................2312.007.002.00---------------------------------------------------------------
..................................................................................................................................................................................................................................TGGCGAACCGGATTGTGGACCC..222.000.00------------2.00---------------------------------------------------
.................................................................................................................................................................................................................................ATGGCGAACCGGATTGTGGATTC..2312.002.00--2.00-------------------------------------------------------------
.........................................................................................................................................................................................................................CACCTCAGATGGCGAACCGGATTGTGGA.....2812.002.00---------------2.00------------------------------------------------
......................................................................................................................................................................................CTTAACTCCAGGCTGCAGA.................................................192.000.002.00---------------------------------------------------------------
..........................................................................................................................................................................................................................ACCTCAGATGGCGAACCGGATT..........2212.002.00-------2.00--------------------------------------------------------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAGAAG...............................................2512.005.002.00---------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGGTACTCTGTACGTGT...................................3612.002.00----------------------1.00-------------------------------------1.00---
............................................................................................................................................................................................................................CTCAGATGGCGAACCGGA............1812.002.00---------2.00------------------------------------------------------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAGAAC...............................................2511.005.001.00---------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAAGA................................................231.000.001.00---------------------------------------------------------------
.........................................................................................................................................................................................................................CACCTCAGATGGCGAACCGGA............2111.001.00-------------------1.00--------------------------------------------
.............................................................................................................................................................................................................................TCAGATGGCGAACCGGATTGTGGATTC..2711.001.00-----------------------------------1.00----------------------------
.......................................................................................................................................................CTCTGTCCTGGAATTCAAGCAGAATGACATCCTTAACTCCAGGCTGC....................................................4711.001.00--------------------------------------------------1.00-------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGTA................................................2311.007.001.00---------------------------------------------------------------
..........................................................................................................................................................................................................................ACCTCAGATGGCGAACCGGAT...........2111.001.00-----1.00----------------------------------------------------------
..............................................................................................................................................................................................................................CAGATGGCGAACCGGATTGTGGA.....2311.001.00-------------1.00--------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCACA.................................................221.000.001.00---------------------------------------------------------------
............................................................................................................................................................................................TCCAGGCTGCAGGTACTC............................................1811.001.00-------1.00--------------------------------------------------------
......................................................................................................................................................................................................................TGTCACCTCAGATGGCGAACCGG.............2311.001.00---------------------------------------------------1.00------------
........................................................................................................................................................................................................................TCACCTCAGATGGCGAACCGG.............2111.001.00------------------------------------------------------1.00---------
..............................................................................................................................................................................................................................CAGATGGCGAACCGGATTGTGG......2211.001.00----------------1.00-----------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAGA...............................................2411.007.001.00---------------------------------------------------------------
.............................................................................................................................................................................................................................TCAGATGGCGAACCGGATT..........1911.001.00-----1.00----------------------------------------------------------
.............................................................................................................................................................................................................................TCAGATGGCGAACCGGATTGTGGATTCTG2911.001.00-------------------------------------1.00--------------------------
.................................................................................................CCCAGTTTGTTACTATCT.......................................................................................................................................181.000.00------------------------------------1.00---------------------------
...........................................................................................................................................................................................................................CCTCAGATGGCGAACCGGATTG.........2211.001.00--------------------------------------------------------1.00-------
....................................................................................................................................................................................TCCTTAACTCCAGGCTGCAGAAA...............................................231.000.001.00---------------------------------------------------------------
.......................................................................................................................................................................................TTAACTCCAGGCTGCAGAAA...............................................201.000.00---------------------------1.00------------------------------------
...............................................................................................................................................................................................................................AGATGGCGAACCGGATTGTAGAC....231.000.00------------------1.00---------------------------------------------
...................................................................................................................................................................................ATCCTTAACTCCAGGCTGCAGAG................................................2311.007.00-------------------------------------------1.00--------------------
.................................................................................................................................................................................................................................ATGGCGAACCGGATTGTGGATTCA.2411.002.00--------------------------------------1.00-------------------------
.......................................................................................................................................................................................................................GTCACCTCAGATGGCGAACCGGATTGTGGA.....3011.001.00----------1.00-----------------------------------------------------
....................................................................................................................................................................................................................TGTGTCACCTCAGATGGCGAACCG..............2411.001.00-------------------------------------------------------1.00--------
.............................................................................................................................................................................................CCAGGCTGCAGGTACTCTGTTCGT.....................................241.000.00----------------------------------1.00-----------------------------
..........................................................................................................TTACTACAGTTCCACGATC.............................................................................................................................191.000.00------------------------------------------1.00---------------------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAAGA................................................241.000.001.00---------------------------------------------------------------
...............................................................................................................................................................................................................................AGATGGCGAACCGGATTGTGGATTCTG2711.001.00-----------------------------------------------------1.00----------
..................................................................................................................................................................................CATCCTTAACTCCAGGCTGCAGAT................................................2411.005.001.00---------------------------------------------------------------
.............................................................................................................................................................................AATGACATCCTTAACTCCAGG........................................................2111.001.00------------------------------1.00---------------------------------
....................................................................................................................................................................................TCCTTAACTCCAGGCTGCAGA.................................................211.000.001.00---------------------------------------------------------------
................................................................................................................................................................................................................................GATGGCGAACCGGATTGTG.......1911.001.00---------------------------------------1.00------------------------
..................................................................................................................................................................................CATCCTTAACTCCAGG........................................................1630.330.33---------------------------------------------------------------0.33
...............................................................................................GTCCCAGTTTGTTAC............................................................................................................................................1530.330.33--------------------------------------------------------------0.33-

Antisense strand
TTTGGGTGTTTTTGCCATGACCTTTTATAATAATGAAAAAAATTTAATTATGGTACTAATTCAGTAAATTCAGTTGGAAAACAATAGATTTGGAAGTCCCAGTTTGTTACTACAGTTCCACAAATACTTGCCAGCTTTATAACTGATTTTTCTCTGTCCTGGAATTCAAGCAGAATGACATCCTTAACTCCAGGCTGCAGGTACTCTGTACGTGTGTCACCTCAGATGGCGAACCGGATTGTGGATTCTG
............................................................................................(((.(((..((((((.((....))...))))))......(((........)))...............))).)))..((((..((.............))..))))....................................................
............................................................................................93.........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925PAZD5
.................................TGAAAAAAATTTAATTCTG...................................................................................................................................................................................................... 191.000.00--------1.00-------------------------------------------------------
.........................................................................................................................................................................................GAGTACCTGCAGCCTGGAGTT............................................ 2111.001.00---------------------------------------------1.00------------------
.........................TATAATAATGAAAAAAATAC............................................................................................................................................................................................................. 201.000.00--------------------------1.00-------------------------------------
........TTTTTGCCATGACCTTATT............................................................................................................................................................................................................................... 191.000.00-----1.00----------------------------------------------------------
...........................TAATAATGAAAAAAATACCC........................................................................................................................................................................................................... 201.000.00----------------------------------------------------------1.00-----
.........................................................AATTCAGTAAATTCACTG............................................................................................................................................................................... 181.000.00---------------------------------------------------------1.00------
...............................AATGAAAAAAATTTACCAT........................................................................................................................................................................................................ 191.000.00--------1.00-------------------------------------------------------
.........................................................................................................................AAATACTTGCCAGCTTTATTTC........................................................................................................... 221.000.00-----------------------------------------1.00----------------------