uc003zio.2_intron_5_0_chr9_4702029

TTCCCCATTCTGGTGTTGGATCTATAGGTTTATTAGAATCCTTACCACAGGTAAGTTGGAAAAGTAAATATTTGTTTTATAAGCCTATTAATTCACATAATTTTTGTTATTTTGCCCCACTCTTTTTTTTTTTTAATATGTGCTACTATTTTAAATATTCCTGCCTCAGAAGATAACTGTTGAATCTTACTTCATGCCATGTTTTGGTGCTGAATCTCACCTCTTAAGTATTTAGAGATACCAGATTTCC .............................................((((..((((..(((((((..............(((((...((((.......)))).)))))..............)))))))...))))...))))............................................................................................................ ............................................45.................................................................................................144........................................................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell)	SRR037944(GSM510482) 293DcrTN_cand5. (cell line)	SRR033712(GSM497057) Burkitt Lymphoma (BL510). (B cell)	TAX577739(Rovira) total RNA. (breast)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex)	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)
.....................................................................................................................CACTCTTTTTTTTTTTTAAATAG..............................................................................................................	23		15.00	0.00	6.00	4.00	3.00	2.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAATTG...............................................................................................................	22		5.00	0.00	2.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAAAAAG..............................................................................................................	23		4.00	0.00	1.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-
...........GGTGTTGGATCTATAGGTT............................................................................................................................................................................................................................	19	1	3.00	3.00	-	-	-	-	3.00	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAATTTG..............................................................................................................	23		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CCACTCTTTTTTTTTTTTAG..................................................................................................................	20		2.00	0.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...................................................................................CCTATTAATTCACATAATTTTTGTTATTTTG........................................................................................................................................	31	1	2.00	2.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.................................................GGTAAGTTGGAAAAGTGT.......................................................................................................................................................................................	18		2.00	0.00	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-
...................................................................................................................CCCACTCTTTTTTTTTTTTCTG.................................................................................................................	22		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAATAT...............................................................................................................	22	3	1.33	1.33	0.33	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................CCCACTCTTTTTTTTTTTTAATATAAAG...........................................................................................................	28		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................ACTCTTTTTTTTTTTTACCG................................................................................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAACCAG..............................................................................................................	23		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................................................ACTCTTTTTTTTTTTTAAAAAG..............................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAATTCG..............................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CCACTCTTTTTTTTTTTCTTG.................................................................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTAGG...................................................................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................ACTCTTTTTTTTTTTTAAGGG...............................................................................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
....................................................................................................................CCACTCTTTTTTTTTTTTAAAAG...............................................................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................TCTTTTTTTTTTTTAATATTACG...........................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................CCCACTCTTTTTTTTTTCG....................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....CATTCTGGTGTTGGATCTATAGGTTTATTAG......................................................................................................................................................................................................................	31	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-
...........................................................................................................................................................TATTCCTGCCTCAGAAGATAACTGTTGAA..................................................................	29	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAAAGG...............................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................CTCTTTTTTTTTTTTAATAATAG............................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................TCTTTTTTTTTTTTAATATCAAG...........................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................CCCCACTCTTTTTTTACT......................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
......................................................................................................................ACTCTTTTTTTTTTTTACATG...............................................................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CCACTCTTTTTTTTTTTAAAG.................................................................................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..................................................GTAAGTTGGAAAAGTAAAT.....................................................................................................................................................................................	19	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
........................................................................................................................TCTTTTTTTTTTTTAATATTCTG...........................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAAAGAG..............................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................TCTTTTTTTTTTTTAATACCAA............................................................................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................CCTGCCTCAGAAGATAACG........................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-
........................................................................................................................TCTTTTTTTTTTTTAATACATG............................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................CCCACTCTTTTTTTTTAATG...................................................................................................................	20		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAAATA...............................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................................................TTTGGTGCTGAATCTTC...............................	17		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
.................................TAGAATCCTTACCACCTG.......................................................................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
.....................................................................................................................CACTCTTTTTTTTTTTTAATA................................................................................................................	21	5	0.80	0.80	0.20	0.20	-	0.40	-	-	-	-	-	-	-	-	-	-
................................................................................................ATAATTTTTGTTATTTTG........................................................................................................................................	18	8	0.62	0.62	-	-	-	-	-	-	-	-	-	0.62	-	-	-	-
.................................TAGAATCCTTACCACAG........................................................................................................................................................................................................	17	2	0.50	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50
.....................................................................................................................CACTCTTTTTTTTTTTTAATAA...............................................................................................................	22	5	0.40	0.80	0.20	-	-	0.20	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................ACTATTTTAAATATTCC.........................................................................................	17	5	0.20	0.20	-	-	-	-	-	-	-	-	-	0.20	-	-	-	-

TTCCCCATTCTGGTGTTGGATCTATAGGTTTATTAGAATCCTTACCACAGGTAAGTTGGAAAAGTAAATATTTGTTTTATAAGCCTATTAATTCACATAATTTTTGTTATTTTGCCCCACTCTTTTTTTTTTTTAATATGTGCTACTATTTTAAATATTCCTGCCTCAGAAGATAACTGTTGAATCTTACTTCATGCCATGTTTTGGTGCTGAATCTCACCTCTTAAGTATTTAGAGATACCAGATTTCC
.............................................((((..((((..(((((((..............(((((...((((.......)))).)))))..............)))))))...))))...))))............................................................................................................
............................................45.................................................................................................144........................................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)

TAX577739(Rovira)
total RNA. (breast)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

.....................................................................................................................CACTCTTTTTTTTTTTTAAATAG..............................................................................................................

15.00

0.00

6.00

4.00

3.00

2.00

.....................................................................................................................CACTCTTTTTTTTTTTTAATTG...............................................................................................................

5.00

0.00

2.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAAAAAG..............................................................................................................

4.00

0.00

1.00

3.00

...........GGTGTTGGATCTATAGGTT............................................................................................................................................................................................................................

3.00

.....................................................................................................................CACTCTTTTTTTTTTTTAATTTG..............................................................................................................

2.00

0.00

2.00

....................................................................................................................CCACTCTTTTTTTTTTTTAG..................................................................................................................

2.00

0.00

1.00

...................................................................................CCTATTAATTCACATAATTTTTGTTATTTTG........................................................................................................................................

2.00

1.00

.................................................GGTAAGTTGGAAAAGTGT.......................................................................................................................................................................................

2.00

0.00

2.00

...................................................................................................................CCCACTCTTTTTTTTTTTTCTG.................................................................................................................

2.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAATAT...............................................................................................................

1.33

0.33

1.00

...................................................................................................................CCCACTCTTTTTTTTTTTTAATATAAAG...........................................................................................................

1.00

0.00

1.00

......................................................................................................................ACTCTTTTTTTTTTTTACCG................................................................................................................

1.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAACCAG..............................................................................................................

1.00

0.00

1.00

......................................................................................................................ACTCTTTTTTTTTTTTAAAAAG..............................................................................................................

1.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAATTCG..............................................................................................................

1.00

0.00

1.00

....................................................................................................................CCACTCTTTTTTTTTTTCTTG.................................................................................................................

1.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTAGG...................................................................................................................

1.00

0.00

1.00

......................................................................................................................ACTCTTTTTTTTTTTTAAGGG...............................................................................................................

1.00

0.00

1.00

....................................................................................................................CCACTCTTTTTTTTTTTTAAAAG...............................................................................................................

1.00

0.00

1.00

........................................................................................................................TCTTTTTTTTTTTTAATATTACG...........................................................................................................

1.00

0.00

1.00

...................................................................................................................CCCACTCTTTTTTTTTTCG....................................................................................................................

1.00

0.00

1.00

.....CATTCTGGTGTTGGATCTATAGGTTTATTAG......................................................................................................................................................................................................................

1.00

...........................................................................................................................................................TATTCCTGCCTCAGAAGATAACTGTTGAA..................................................................

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAAAGG...............................................................................................................

1.00

0.00

1.00

.......................................................................................................................CTCTTTTTTTTTTTTAATAATAG............................................................................................................

1.00

0.00

1.00

........................................................................................................................TCTTTTTTTTTTTTAATATCAAG...........................................................................................................

1.00

0.00

1.00

..................................................................................................................CCCCACTCTTTTTTTACT......................................................................................................................

1.00

0.00

1.00

......................................................................................................................ACTCTTTTTTTTTTTTACATG...............................................................................................................

1.00

0.00

1.00

....................................................................................................................CCACTCTTTTTTTTTTTAAAG.................................................................................................................

1.00

0.00

1.00

..................................................GTAAGTTGGAAAAGTAAAT.....................................................................................................................................................................................

1.00

........................................................................................................................TCTTTTTTTTTTTTAATATTCTG...........................................................................................................

1.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAAAGAG..............................................................................................................

1.00

0.00

1.00

........................................................................................................................TCTTTTTTTTTTTTAATACCAA............................................................................................................

1.00

0.00

1.00

...............................................................................................................................................................CCTGCCTCAGAAGATAACG........................................................................

1.00

0.00

1.00

........................................................................................................................TCTTTTTTTTTTTTAATACATG............................................................................................................

1.00

0.00

1.00

...................................................................................................................CCCACTCTTTTTTTTTAATG...................................................................................................................

1.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAAATA...............................................................................................................

1.00

0.00

1.00

..........................................................................................................................................................................................................TTTGGTGCTGAATCTTC...............................

1.00

0.00

1.00

.................................TAGAATCCTTACCACCTG.......................................................................................................................................................................................................

1.00

0.00

1.00

.....................................................................................................................CACTCTTTTTTTTTTTTAATA................................................................................................................

0.80

0.20

0.40

................................................................................................ATAATTTTTGTTATTTTG........................................................................................................................................

0.62

.................................TAGAATCCTTACCACAG........................................................................................................................................................................................................

0.50

.....................................................................................................................CACTCTTTTTTTTTTTTAATAA...............................................................................................................

0.40

0.80

0.20

................................................................................................................................................ACTATTTTAAATATTCC.........................................................................................

0.20