ID: uc003zfv.2_intron_1_0_chr9_35265_r
GENE: (1)
chr9:35215-35553-


(1)
AGO2.ip 		(2)
BRAIN 		(5)
BREAST 		(13)
CELL-LINE 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
ATTTATGGCTTCGTGAAGTCTTTCCTGACCCCCGATGCTGCTGACTATAGGTAAGTCTGAGCAAATCTGGGGGAGCCTCATCTTGGCATGAGAAAGAGATGGCTTCTTCTAAGCCCACTGGCCGTGATCCCAGGATTATAACACATTCTGGCTCAAGTCCAGACTATTTGTAGAACACAGGAGATCCTCCATGAGAGGTAGTATAATATAGAGGATATGTGTGCTTACTAAGAGGCTGCCTGTCTGACCTTGGACAAGTTCTTTTTATTTATTTATTTATTTTTTATAGAGACAAAGTCTCACTATGTTGCTCAGGCTGGTCTTGAACTCCTGGCCTCA
.........................................................................................................................................................................((((.(((((....((((((.(((.............))).)))))).)))))..))))(((((((..((.(((((......))))).)).)))))))........................................................................
........................................................................................................................................................................169.....................................................................................................................289................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038854(GSM458537)
MM653. (cell line)
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCTG......................................................26214.000.0091.0080.0030.0013.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTTATTG...................................................3021.000.009.007.001.004.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCT.......................................................2521.000.0011.009.00-1.00---------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTCATG...................................................2719.000.008.005.004.001.00-1.00-------------------------
.............................................................................................................................................................................AACACAGGAGATCCTGGGT...................................................................................................................................................199.000.00---1.00--4.00--1.001.001.00-------------1.00-----
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATAG..................................................2757.807.802.402.401.801.20---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCTA......................................................265.000.003.001.001.00----------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTTTCTTG....................................................274.000.00--3.001.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCTT......................................................263.000.001.002.00-----------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTCTTG.....................................................253.000.00--1.002.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTCTTG....................................................283.000.00-1.00-2.00---------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTATTG......................................................253.000.002.00--1.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTCTTG....................................................292.000.00--1.001.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCCG......................................................262.000.00--2.00----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTTCG.....................................................272.000.00-2.00-----------------------------
......................................................................................................................................................................................................................................................................................................................CTCAGGCTGGTCTTGAACTCCGCAC....252.000.00-----2.00-------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTTACACG.................................................292.000.00--1.001.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTCCTG......................................................262.000.00--1.001.00---------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTTATACG.................................................292.000.002.00------------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATCTAG.......................................................242.000.00---2.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTTTACA...................................................292.000.002.00------------------------------
.............................................................................................................................................................................AACACAGGAGATCCTGGGC...................................................................................................................................................191.000.00-----------1.00-------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTTTACAG..................................................301.000.00-1.00-----------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATCTTC...........................................................201.000.00-------1.00-----------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTACTT....................................................281.000.00--1.00----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTCG...........................................................211.000.00---1.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTCTG.......................................................251.000.00--1.00----------------------------
......................................................................................................................................................................TTTGTAGAACACAGGAGATCCTCT.....................................................................................................................................................241.000.00------------------------1.00------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTTCTTG...................................................301.000.00--1.00----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTATTG......................................................261.000.00-1.00-----------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTATCG......................................................271.000.00--1.00----------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTCAG.......................................................241.000.00---1.00---------------------------
..........................................................................................................................................................................TAGAACACAGGAGATTTCT......................................................................................................................................................191.000.00-----------------1.00-------------
................................................................................................................................................................................................................................................................................................................................TCTTGAACTCCTGGCCGGC191.000.00---------------------1.00---------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTTTCG......................................................251.000.00--1.00----------------------------
..............................................................................................................................................................................ACACAGGAGATCCTCGGT...................................................................................................................................................181.000.00---------1.00---------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTACTAA........................................................251.000.001.00------------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCG.......................................................251.000.00-1.00-----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTTTCTA...................................................291.000.00--1.00----------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTCTCG.....................................................251.000.00---1.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTATTG....................................................291.000.001.00------------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATCTAG.......................................................251.000.00--1.00----------------------------
................................................................................................................................................................................................................................................................................................................ATGTTGCTCAGGCTGGGCGA...............201.000.00----1.00--------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTGGG...........................................................211.000.00--1.00----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTCG........................................................241.000.001.00------------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTTTTCG.....................................................261.000.00--1.00----------------------------
.................................................................................................................................................................................................................................................................GTTCTTTTTATTTATTTATTTATTTTTTTTG...................................................311.000.00---1.00---------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATCTTG.......................................................251.000.00--1.00----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTATC.....................................................271.000.00----1.00--------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTCTTG.....................................................281.000.00---1.00---------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTTAATTG.................................................291.000.00--1.00----------------------------
................................................................................................................................................................................................................................................................................................................................TCTTGAACTCCTGGCCGGCA201.000.00---------------1.00---------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTCGAG....................................................281.000.00-----1.00-------------------------
.........................................................................................................................................................................................................................................................................................................TCTCACTATGTTGCTCAGGCTGGTCCCC..............281.000.00----1.00--------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTCATG......................................................251.000.00--1.00----------------------------
...................................................................................................................................................................................................................................................................................................................TTGCTCAGGCTGGTCTTGAACTCCTGGCCTCCC331.000.00-----1.00-------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTCCG.....................................................281.000.00-1.00-----------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTCAG......................................................261.000.00-1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................TTGCTCAGGCTGGTCTTGAACTCCGAGC....281.000.00----1.00--------------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTTTCTCG....................................................281.000.00---1.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTTTACAG..................................................311.000.00--1.00----------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTTTCCG...................................................301.000.00---1.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTATTG......................................................271.000.00-1.00-----------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTTTTTATAT..................................................291.000.00--1.00----------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTTCG.....................................................281.000.00---1.00---------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTGTTG..........................................................211.000.00--------------1.00----------------
.............................................................................................................................................................................................................................................................................................................................TGGTCTTGAACTCCTGGCCTCTGAA251.000.00-----------------------1.00-------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTTTTCAAG...................................................281.000.00-------1.00-----------------------
.................................................................................................................................................................................................................................................................................................................................CTTGAACTCCTGGCCGGC181.000.00------------1.00------------------
...................................................................................................................................................................................................................................................................TCTTTTTATTTATTTATTTATTAG........................................................241.000.001.00------------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTGGGG......................................................241.000.00-----1.00-------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTTCAG......................................................251.000.00-1.00-----------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTAACAT............................................................211.000.001.00------------------------------
....................................................................................................................................................................................................................................................................CTTTTTATTTATTTATTTATTCTAG......................................................251.000.00---1.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTATG...........................................................221.000.001.00------------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTCACG...................................................271.000.00---1.00---------------------------
..................................................................................................................................................................................................................................................................TTCTTTTTATTTATTTATTTATTTTCAG.....................................................281.000.00-1.00-----------------------------
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATA...................................................2680.380.38-0.38-----------------------------
........................................................................................................................................................................TGTAGAACACAGGAGATCCTCCATGAGAGG.............................................................................................................................................3060.170.17-------------0.17-----------------
....................................................................................................................................................................TATTTGTAGAACACAGGAGATCCT.......................................................................................................................................................2470.140.14-----------------------------0.14-
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATAACG................................................2980.120.38--0.12----------------------------
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATACG.................................................2880.120.38--0.12----------------------------

Antisense strand
ATTTATGGCTTCGTGAAGTCTTTCCTGACCCCCGATGCTGCTGACTATAGGTAAGTCTGAGCAAATCTGGGGGAGCCTCATCTTGGCATGAGAAAGAGATGGCTTCTTCTAAGCCCACTGGCCGTGATCCCAGGATTATAACACATTCTGGCTCAAGTCCAGACTATTTGTAGAACACAGGAGATCCTCCATGAGAGGTAGTATAATATAGAGGATATGTGTGCTTACTAAGAGGCTGCCTGTCTGACCTTGGACAAGTTCTTTTTATTTATTTATTTATTTTTTATAGAGACAAAGTCTCACTATGTTGCTCAGGCTGGTCTTGAACTCCTGGCCTCA
.........................................................................................................................................................................((((.(((((....((((((.(((.............))).)))))).)))))..))))(((((((..((.(((((......))))).)).)))))))........................................................................
........................................................................................................................................................................169.....................................................................................................................289................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038854(GSM458537)
MM653. (cell line)
..........................................................................................................................................................................................................................................................................................................................GGCTGGTCTTGAACTCCTGGCCTCAGGAC 292.000.00----1.001.00-------------------------
......................................................................................................................................................................................................................................................................................................AAGTCTCACTATGTTGCTCAGGCTGGTCTCACC............ 332.000.00----2.00--------------------------
..........................................................................................................................................................................................................................................................................................................GAGTTCAAGACCAGCCTGAGCAACATAGTGAG......... 3201.001.00--------1.00----------------------
........................................................................................................................................................................................................................................................................................................GTTCAAGACCAGCCTGAGCAACATAGTGAGAC........... 3201.001.00--------1.00----------------------
....................................GCTGCTGACTATAGGTG.............................................................................................................................................................................................................................................................................................. 171.000.00-------1.00-----------------------
.......................................................................................................................................................................................................................................................................................................AGTCTCACTATGTTGCTCAGGCTCG................... 251.000.00-----1.00-------------------------
...........................................................................................................................................................................................................................................................................................................TCACTATGTTGCTCAGGCTGGTCTCTGG............ 281.000.00----1.00--------------------------
........................................................................................................................................................................................................................................................................................................CCAGCCTGAGCAACATAGTGAGAC................... 2401.001.00------------------1.00------------
.........................................................................................................................................................................................................................................................................................................TCTCACTATGTTGCTCAAGAA..................... 211.000.00--------------------------1.00----
................................................................................................................................................................................................................................................................................................................ATGTTGCTCAGGCTGGTCTTGATGAG......... 261.000.00-----1.00-------------------------
.......................................................................................................................................................................................................................................................................................................AGTCTCACTATGTTGCTCAGGCTGGTCGT............... 291.000.00-----1.00-------------------------
...........................................................................................................................................AACACATTCTGGCTCAATA..................................................................................................................................................................................... 191.000.00----------------1.00--------------
.................................................................................................GATGGCTTCTTCTAAGCCTTT............................................................................................................................................................................................................................. 211.000.00----------------------1.00--------
.......................CCTGACCCCCGATGCGG........................................................................................................................................................................................................................................................................................................... 171.000.00----------1.00--------------------
..................................................................................................................................................................................................GAGGTAGTATAATATCTTG.............................................................................................................................. 191.000.00-------------------1.00-----------
......................................................................................................................................................................................................................................................................................................AAGTCTCACTATGTTGCTCAGGCTGGTCTGC.............. 311.000.00----1.00--------------------------
.......................................................................................................................................................................................................................................................................................................AGTCTCACTATGTTGCTCAGGCTGGTCTTCG............. 311.000.00----1.00--------------------------
.....................................................................................................................................................................................................................................................................................................................GCTCAGGCTGGTCTTGTCTG.......... 201.000.00-------------1.00-----------------
..................................................................................................................................................................................................................................................................................................................GTTGCTCAGGCTGGTCTTGAACTCGGC...... 271.000.00----1.00--------------------------
..................................................................................................................................................................................................................................................................................................................GTTGCTCAGGCTGGTCTTGAACTCCTGGTG... 301.000.00----1.00--------------------------
........................................................................................................................................................................................................................................................................................................................CAGGCTGGTCTTGAACTCCTGGCCTCACCG 301.000.00-----1.00-------------------------
............................................................................................................................................................................................................................................................................................................ACCAGCCTGAGCAACATAGTG.................. 2101.001.00--------------------1.00----------
..........................................................................................................CTGGGATCACGGCCAGTGGGCTTAGAA.............................................................................................................................................................................................................. 2750.400.40------------0.40------------------
............................................................................................................TCACGGCCAGTGGGCTTAG.................................................................................................................................................................................................................... 1950.200.20---------------------------0.20---
.......................TCAGCAGCATCGGGGGTCAGG....................................................................................................................................................................................................................................................................................................... 2170.140.14------------------------------0.14
.........................................................................CATGCCAAGATGAGGCT......................................................................................................................................................................................................................................................... 1770.140.14----------------------------0.14--