ID: uc003zfc.3_intron_0_0_chr8_146277884_f
GENE: (1)
chr8:146277834-146278021+


(1)
AGO2.ip 		(14)
B-CELL 		(1)
BRAIN 		(16)
BREAST 		(31)
CELL-LINE 		(9)
CERVIX 		(2)
HEART 		(3)
HELA 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
GTCGGACTCTGCGCCCCGCGTAGTTCCGGTGGCGACTGCGGCGCATGGCGGTGAGCGGTGTGGAGAAGACGCGCGGGTGGCTGGGCCTTGCATTGTTGGCGGCTCTCGGTGACCCTCGTGCTACCCCCCTTTCTCCAGGCCCTGGGACATCTTGCTGGGGAGGCAGCGGCGGCCCCAGGCCCGGGTAC
..................................................((.((((((((((...((.(((....))).))...))..)))))))).))........................................................................................
..................................................51........................................................109.............................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040023(GSM532908)
G575T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040027(GSM532912)
G220T. (cervix)		GSM532872(GSM532872)
G652T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................CGGTGTGGAGAAGACGCG...................................................................................................................18116.0016.00----1.00---4.00----4.00----------------1.00--1.00----------------1.00-1.00--------------1.00----1.00--------------------------1.00---
................................................CGGTGAGCGGTGTGGAGAA.........................................................................................................................19112.0012.002.00-3.001.00--------------------------1.00-2.00---1.00--------------------1.00----------------------------------1.00----------
................................................CGGTGAGCGGTGTGGAGAAGA.......................................................................................................................2119.009.002.00-2.00----------------1.001.00------------------------2.00------------------------------------------------------1.00--
...............................GCGACTGCGGCGCATGGCGG.........................................................................................................................................2019.009.00-6.00---------------1.00-------------------2.00-----------------------------------------------------------------
.....................................................AGCGGTGTGGAGAAGACGCG...................................................................................................................2018.008.002.00----1.00---1.00--1.001.00----1.00---------------------1.00--------------------------------------------------------------
....................................................GAGCGGTGTGGAGAAGAC......................................................................................................................1818.008.00----2.003.001.00-----------------1.00--------------------------1.00---------------------------------------------------
.................................................GGTGAGCGGTGTGGAGAA.........................................................................................................................1818.008.00------------4.00---2.00------------------------2.00-------------------------------------------------------------
.....................................................AGCGGTGTGGAGAAGACG.....................................................................................................................1818.008.00---2.00-1.00--2.00---------------1.00--------1.00-------------------------------------------------------------1.00-------
..................................................GTGAGCGGTGTGGAGAAGA.......................................................................................................................1917.007.002.00-2.001.00---------------------------------------------1.00--------------------------------------1.00--------------
......................GTTCCGGTGGCGACTGCGG...................................................................................................................................................1916.006.00-4.00------------1.00----------------------------------------------------------------------------1.00-----------
..................................................GTGAGCGGTGTGGAGAAGAC......................................................................................................................2016.006.00-----2.00--1.00--1.00--------------------------------------------1.00---------1.00------------------------------------
..................................................GTGAGCGGTGTGGAGAAGACGCGCGGGTGGCTGGGCCTTGCATTGTTGGCGGCTCTCGGTGACCCTTT......................................................................686.000.00----------6.00--------------------------------------------------------------------------------------------
....................................................GAGCGGTGTGGAGAAGACGC....................................................................................................................2016.006.00---1.00----------------------------------------2.00--1.00-------1.00------------------------------------------1.00----
................................................CGGTGAGCGGTGTGGAGA..........................................................................................................................1815.005.00--1.00---------------1.00--1.00------------------------------------------------1.00--1.00-----------------------------
............................GTGGCGACTGCGGCGCATGGC...........................................................................................................................................2114.004.00------------1.00-2.00----------1.00-----------------------------------------------------------------------------
...............................................GCGGTGAGCGGTGTGGAGAA.........................................................................................................................2014.004.00--2.00------1.00---------------------------------1.00-----------------------------------------------------------
.........................................CGCATGGCGGTGAGCGGTGTGGAGAAG........................................................................................................................2714.004.004.00------------------------------------------------------------------------------------------------------
...................................................TGAGCGGTGTGGAGAAGACG.....................................................................................................................2014.004.002.00----------------------------------1.00--------------------------------------1.00----------------------------
....................................................GAGCGGTGTGGAGAAGACGCG...................................................................................................................2114.004.00---1.00------------------1.00------------------------------------------------1.00---------1.00---------------------
......................................................GCGGTGTGGAGAAGACGCG...................................................................................................................1914.004.00-2.00-------------1.00---------1.00-----------------------------------------------------------------------------
.................................................GGTGAGCGGTGTGGAGAAGAC......................................................................................................................2114.004.00---------1.00------1.00-----------------------1.00----------------------------------------------1.00---------------
.......................................................CGGTGTGGAGAAGACGC....................................................................................................................1713.003.00----------1.002.00-------------------------------------------------------------------------------------------
...........................................................................................ATTGTTGGCGGCTCTCGGT..............................................................................1913.003.00---------------3.00---------------------------------------------------------------------------------------
..................................................................................GGGCCTTGCATTGTTGGC........................................................................................1813.003.00-----------------------1.00----------------------2.00--------------------------------------------------------
...............................................GCGGTGAGCGGTGTGGAGAAG........................................................................................................................2113.003.001.00-1.00----------------------1.00-----------------------------------------------------------------------------
...............................................GCGGTGAGCGGTGTGGAGA..........................................................................................................................1913.003.00--1.00-----------------------------------1.00-----------------------------------------------1.00----------------
.................................................GGTGAGCGGTGTGGAGAAGA.......................................................................................................................2013.003.002.00----------------------------------------------------1.00-------------------------------------------------
...................................................TGAGCGGTGTGGAGAAGA.......................................................................................................................1812.002.002.00------------------------------------------------------------------------------------------------------
...............................................GCGGTGAGCGGTGTGGAGAAGACG.....................................................................................................................2412.002.00---1.00-----------------------1.00---------------------------------------------------------------------------
............................GTGGCGACTGCGGCGCATGG............................................................................................................................................2012.002.00------------------------------------------------2.00------------------------------------------------------
.................................................GGTGAGCGGTGTGGAGAAGACGCG...................................................................................................................2412.002.00--------------------------------------1.00--------------------1.00-------------------------------------------
........................TCCGGTGGCGACTGCGGCG.................................................................................................................................................1912.002.00----1.00------------------------------1.00-------------------------------------------------------------------
......................................................GCGGTGTGGAGAAGACG.....................................................................................................................1712.002.00-2.00-----------------------------------------------------------------------------------------------------
..............................................................GAGAAGACGCGCGGGTGGCTGG........................................................................................................2212.002.00--------------------2.00----------------------------------------------------------------------------------
............................GTGGCGACTGCGGCGCATGGCGG.........................................................................................................................................2312.002.00----------------------------2.00--------------------------------------------------------------------------
.................................................GGTGAGCGGTGTGGAGAAG........................................................................................................................1912.002.00-----------------------------------------------------------------1.00----------------------------1.00--------
.....................................................AGCGGTGTGGAGAAGAC......................................................................................................................1722.002.00------1.00---------1.00--------------------------------------------------------------------------------------
.............................TGGCGACTGCGGCGCA...............................................................................................................................................1612.002.00-----------------------------2.00-------------------------------------------------------------------------
...................................................................GACGCGCGGGTGGCTGGGCCTTGCAT...............................................................................................2612.002.002.00------------------------------------------------------------------------------------------------------
...................GTAGTTCCGGTGGCGA.........................................................................................................................................................1612.002.00-----------------1.00---1.00---------------------------------------------------------------------------------
........................TCCGGTGGCGACTGCGGC..................................................................................................................................................1812.002.00------1.00---------------1.00--------------------------------------------------------------------------------
.........................................................................................GCATTGTTGGCGGCTCT..................................................................................1712.002.00---------2.00---------------------------------------------------------------------------------------------
................................................CGGTGAGCGGTGTGGAG...........................................................................................................................1712.002.00------2.00------------------------------------------------------------------------------------------------
...........................................................................................ATTGTTGGCGGCTCTCGG...............................................................................1812.002.00-----------------------1.00---------------------------------------------1.00---------------------------------
......................................................GCGGTGTGGAGAAGACGC....................................................................................................................1812.002.00------------------------------------1.00---------------------------1.00--------------------------------------
......................................CGGCGCATGGCGGTGAG.....................................................................................................................................1712.002.00-----------2.00-------------------------------------------------------------------------------------------
............................................................TGGAGAAGACGCGCGGGTGG............................................................................................................2012.002.002.00------------------------------------------------------------------------------------------------------
...........................................................GTGGAGAAGACGCGCGGG...............................................................................................................1812.002.002.00------------------------------------------------------------------------------------------------------
......................GTTCCGGTGGCGACTGCGGCGC................................................................................................................................................2211.001.00------------------1.00------------------------------------------------------------------------------------
..........................................................................................CATTGTTGGCGGCTCTCGGTG.............................................................................2111.001.00----1.00--------------------------------------------------------------------------------------------------
........................TCCGGTGGCGACTGCGGCGCA...............................................................................................................................................2111.001.00-----------------1.00-------------------------------------------------------------------------------------
..........................CGGTGGCGACTGCGGCGC................................................................................................................................................1811.001.00------1.00------------------------------------------------------------------------------------------------
......................................CGGCGCATGGCGGTGAGC....................................................................................................................................1811.001.00----1.00--------------------------------------------------------------------------------------------------
......................................................................................................................................CCAGGCCCTGGGACATCTTGCT................................2211.001.00---------------------------------------------------------------------------------------------1.00---------
.....................AGTTCCGGTGGCGACTGCG....................................................................................................................................................1911.001.00---------1.00---------------------------------------------------------------------------------------------
......................................................................GCGCGGGTGGCTGGGGC.....................................................................................................171.000.00--------------------------------------------------------------1.00----------------------------------------
....................................................GAGCGGTGTGGAGAAGACG.....................................................................................................................1911.001.00-----1.00-------------------------------------------------------------------------------------------------
................................................CGGTGAGCGGTGTGGAGAAG........................................................................................................................2011.001.00--1.00----------------------------------------------------------------------------------------------------
...................................................................GACGCGCGGGTGGCTGGG.......................................................................................................1811.001.001.00------------------------------------------------------------------------------------------------------
.................................................................AAGACGCGCGGGTGGCTGGGCCTCG..................................................................................................251.000.00-------1.00-----------------------------------------------------------------------------------------------
...................GTAGTTCCGGTGGCGACTGCG....................................................................................................................................................2111.001.00-------------------------------------------------1.00-----------------------------------------------------
.........................................................................................GCATTGTTGGCGGCTCTCGGG..............................................................................211.000.00---------------1.00---------------------------------------------------------------------------------------
.........................................................GTGTGGAGAAGACGCGCGGGTGGCTG.........................................................................................................2611.001.00------------------------------------------------------------------------------------------------1.00------
.............................TGGCGACTGCGGCGC................................................................................................................................................1511.001.00----------------------------------1.00--------------------------------------------------------------------
........CTGCGCCCCGCGTAGTTCCGG...............................................................................................................................................................2111.001.00------------------------------------------------------------------------------------1.00------------------
............................GTGGCGACTGCGGCGCATTG............................................................................................................................................2011.001.00------------------------------------------1.00------------------------------------------------------------
..........................CGGTGGCGACTGCGGCG.................................................................................................................................................1711.001.00--------------------------------------------------------------------1.00----------------------------------
.....................AGTTCCGGTGGCGACTGCGG...................................................................................................................................................2011.001.001.00------------------------------------------------------------------------------------------------------
..................................................GTGAGCGGTGTGGAGACG........................................................................................................................181.000.00---------------------------------------------------1.00---------------------------------------------------
................................CGACTGCGGCGCATGGA...........................................................................................................................................171.000.00---------------------------1.00---------------------------------------------------------------------------
...................GTAGTTCCGGTGGCGACTG......................................................................................................................................................1911.001.00---------------------------------------1.00---------------------------------------------------------------
............GCCCCGCGTAGTTCCGGTGGCGACTGCGG...................................................................................................................................................2911.001.00--------------------------1.00----------------------------------------------------------------------------
..................................................GTGAGCGGTGTGGAGAAG........................................................................................................................1811.001.00-------------------------------------------------------------------------------------------------1.00-----
.....................................GCGGCGCATGGCGGTGA......................................................................................................................................1711.001.00------1.00------------------------------------------------------------------------------------------------
....................................................................................GCCTTGCATTGTTGGCGG......................................................................................1811.001.00----1.00--------------------------------------------------------------------------------------------------
...................................................................GACGCGCGGGTGGCTGGGCCCCGC.................................................................................................241.000.00-----------------------------------------------------------------------------1.00-------------------------
...............................................................................GCTGGGCCTTGCATTGTTGG.........................................................................................2011.001.00---------------------1.00---------------------------------------------------------------------------------
.....................................................AGCGGTGTGGAGAAGCCG.....................................................................................................................181.000.00---1.00---------------------------------------------------------------------------------------------------
...............................GCGACTGCGGCGCATGGCG..........................................................................................................................................1911.001.00----------------------------------------------------------------------------1.00--------------------------
................................CGACTGCGGCGCATGGCGGTGAGCGGT.................................................................................................................................2711.001.00-------------------------------------------1.00-----------------------------------------------------------
.................................................GGTGAGCGGTGTGGAGTTTT.......................................................................................................................201.000.00---------------------------------------1.00---------------------------------------------------------------
.TCGGACTCTGCGCCCCGCGTA......................................................................................................................................................................2111.001.00----------------1.00--------------------------------------------------------------------------------------
.............................TGGCGACTGCGGCGCATGGCGGC........................................................................................................................................231.000.00---------------------------------------------------------------1.00---------------------------------------
...................................................TGAGCGGTGTGGAGAAGACGCG...................................................................................................................2211.001.00--------------------------------------------------------------------------------1.00----------------------
............................................................................GTGGCTGGGCCTTGCATTGTTGG.........................................................................................2311.001.00---------------1.00---------------------------------------------------------------------------------------
.................GCGTAGTTCCGGTGGCG..........................................................................................................................................................1711.001.00-----------------1.00-------------------------------------------------------------------------------------
......................................CGGCGCATGGCGGTGAGCGGTG................................................................................................................................2211.001.00--------------------------------------------------1.00----------------------------------------------------
.....................AGTTCCGGTGGCGACTGCGGC..................................................................................................................................................2111.001.00-------------------1.00-----------------------------------------------------------------------------------
......................GTTCCGGTGGCGACTGCGGCG.................................................................................................................................................2111.001.00-----------------------------------------------1.00-------------------------------------------------------
.............................................................................TGGCTGGGCCTTGCATTGTTGGCGG......................................................................................2511.001.00---------------------------1.00---------------------------------------------------------------------------
....................................................................................GCCTTGCATTGTTGGCGGCTCTC.................................................................................2311.001.00-----------------------1.00-------------------------------------------------------------------------------
.................................................................AAGACGCGCGGGTGGCTGGGCCC....................................................................................................231.000.00-------1.00-----------------------------------------------------------------------------------------------
..................................................................AGACGCGCGGGTGGCTGGGCCCTGC.................................................................................................251.000.00-------1.00-----------------------------------------------------------------------------------------------
.......................................................CGGTGTGGAGAAGACGCGCGG................................................................................................................2111.001.00---1.00---------------------------------------------------------------------------------------------------
.........................................................................CGGGTGGCTGGGCCTTGCAT...............................................................................................2011.001.00-------------------------------1.00-----------------------------------------------------------------------
.......................................................CGGTGTGGAGAAGACGTG...................................................................................................................181.000.00-------------1.00-----------------------------------------------------------------------------------------
...................GTAGTTCCGGTGGCGACTGCGGC..................................................................................................................................................2311.001.001.00------------------------------------------------------------------------------------------------------
............................GTGGCGACTGCGGCGCATGGCGGCCC......................................................................................................................................2611.002.00-------------------1.00-----------------------------------------------------------------------------------
............................................................................................................GTGACCCTCGTGCTACCCCC............................................................2011.001.001.00------------------------------------------------------------------------------------------------------
...............................................GCGGTGAGCGGTGTGGAG...........................................................................................................................1811.001.00-------------------------------------------------------------------------------1.00-----------------------
.............................TGGCGACTGCGGCGCATGG............................................................................................................................................1911.001.00----1.00--------------------------------------------------------------------------------------------------
..............................GGCGACTGCGGCGCATGGCGGT........................................................................................................................................2211.001.00--------------1.00----------------------------------------------------------------------------------------
.............................TGGCGACTGCGGCGCATGGC...........................................................................................................................................2011.001.00----------------------------------------------------------1.00--------------------------------------------
...............................................GCGGTGAGCGGTGTGGAGAAGAC......................................................................................................................2311.001.00---1.00---------------------------------------------------------------------------------------------------
....................................................................ACGCGCGGGTGGCTGGGCCTCGC.................................................................................................231.000.00-------1.00-----------------------------------------------------------------------------------------------
.................................................................AAGACGCGCGGGTGGCTGGGCCCTGC.................................................................................................261.000.00-------1.00-----------------------------------------------------------------------------------------------
...........................GGTGGCGACTGCGGCGCAT..............................................................................................................................................1911.001.00------------------------------------------------------------------------------1.00------------------------
.......................................................................CGCGGGTGGCTGGGCCTTGA.................................................................................................201.000.00----------------------------------------------------------------------------------1.00--------------------
..................................................................AGACGCGCGGGTGGCTGGGCCC....................................................................................................221.000.00-------1.00-----------------------------------------------------------------------------------------------
.......................TTCCGGTGGCGACTGCGGC..................................................................................................................................................1911.001.00------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................CCTGGGACATCTTGCTGGGGAGGC........................2411.001.00------------------------------------------------------------1.00------------------------------------------
...................GTAGTTCCGGTGGCGACTGC.....................................................................................................................................................2011.001.00-------------------1.00-----------------------------------------------------------------------------------
................................CGACTGCGGCGCATGGCGGTGA......................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------1.00-------------
....................................................................ACGCGCGGGTGGCTGGGC......................................................................................................1811.001.00----------------------1.00--------------------------------------------------------------------------------
..................................................................AGACGCGCGGGTGGCTGGGCCTCGCA................................................................................................261.000.00-------1.00-----------------------------------------------------------------------------------------------
..........GCGCCCCGCGTAGTTCCGG...............................................................................................................................................................1911.001.00----1.00--------------------------------------------------------------------------------------------------
...................................................TGAGCGGTGTGGAGAAG........................................................................................................................1711.001.00------1.00------------------------------------------------------------------------------------------------
............................GTGGCGACTGCGGCGC................................................................................................................................................1611.001.00--------------1.00----------------------------------------------------------------------------------------
.................................................................AAGACGCGCGGGTGGCTGGGCCCTGG.................................................................................................261.000.00-------1.00-----------------------------------------------------------------------------------------------
.....................................................AGCGGTGTGGAGAAGACGC....................................................................................................................1911.001.00------------------------------------------1.00------------------------------------------------------------
............................................ATGGCGGTGAGCGGTGTGGAGA..........................................................................................................................2211.001.00-------------------------------1.00-----------------------------------------------------------------------
..................................................GTGAGCGGTGTGGAGAAGACGCG...................................................................................................................2311.001.00-----------1.00-------------------------------------------------------------------------------------------
...............................................GCGGTGAGCGGTGTGGAGAAGACGCG...................................................................................................................2611.001.00------------------------1.00------------------------------------------------------------------------------
...............CCGCGTAGTTCCGGTGGCGA.........................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------1.00-------------------
..................................................GTGAGCGGTGTGGAGCGG........................................................................................................................181.000.00-------------------------------------------------------------1.00-----------------------------------------
............................GTGGCGACTGCGGCGCAT..............................................................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00------------
...................................................................................................CGGCTCTCGGTGACCCTCGTGCT..................................................................2311.001.00--------------------------1.00----------------------------------------------------------------------------
.TCGGACTCTGCGCCCTCA.........................................................................................................................................................................181.000.00------------------------------------------------------1.00------------------------------------------------
.........................................................GTGTGGAGAAGACGCGCGGGTGGCTGGGCCT....................................................................................................3111.001.00-------------------------------------------------------------------------------------1.00-----------------
..................................................................................................GCGGCTCTCGGTGACCCTCGT.....................................................................2111.001.00---------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................CAGCGGCGGCCCCAGG.........1680.120.12-----------------------------------------------------------------------------------------------------0.12-

Antisense strand
GTCGGACTCTGCGCCCCGCGTAGTTCCGGTGGCGACTGCGGCGCATGGCGGTGAGCGGTGTGGAGAAGACGCGCGGGTGGCTGGGCCTTGCATTGTTGGCGGCTCTCGGTGACCCTCGTGCTACCCCCCTTTCTCCAGGCCCTGGGACATCTTGCTGGGGAGGCAGCGGCGGCCCCAGGCCCGGGTAC
..................................................((.((((((((((...((.(((....))).))...))..)))))))).))........................................................................................
..................................................51........................................................109.............................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040023(GSM532908)
G575T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040027(GSM532912)
G220T. (cervix)		GSM532872(GSM532872)
G652T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................TGGCGGTGAGCGGTGTCT............................................................................................................................. 181.000.00---------------------------------------------------------------------------1.00---------------------------
..................................................................................................................................................................GCAGCGGCGGCCCCAGGGG....... 191.000.00----------------------------------1.00--------------------------------------------------------------------
...........................................................................................................................CTGGAGAAAGGGGGG.................................................. 1590.110.11------------------------------------------------------------------------------------------------------0.11