ID: uc003zdk.1_intron_1_0_chr8_145745439_f
GENE: (2)
chr8:145745389-145745671+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCCCGGCTCCACACCTCAGAGCCTGGGGCCAGCACACAGCCCCTCTGCAGGTATGGACTTATCTGGAGGGTCGTCAGGCCAGGGGTGTGTAAGTGGGTCCCCTGAGGAGGCTTGGGTCATAAAGTTAGCAAGAGCTCATGCAGGAGCAGGCGCGTTGCTCCTGTCCCAAGGTGGCTGGGAGGGGGTATGGGCGCTGCCCCTCCACCCCTTCCTCACACCATTCCTACTCCCAGGAAGCATGCGCTGCGGGTGCTGGACATGACGGGCCTCTTGGATGATGGTG
..................................................((...(((((...(((.(((((.((....((((((.............))))))..)))))))...)))..))))).))....((((......))))........................................................................................................................................
..................................................51..................................................................................................151..................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)
................................................................................................................................CAAGAGCTCATGCAGATAA........................................................................................................................................1921.000.00-12.00-2.00--1.003.002.00----------1.00--------------
................................................................................................................................CAAGAGCTCATGCAGAATC........................................................................................................................................1913.000.0013.00---------------------------------
................................................................................................................................CAAGAGCTCATGCAGATA.........................................................................................................................................1812.000.002.003.00-4.00--2.00-1.00-------------------------
..................................................GTATGGACTTATCTGGAGGG.....................................................................................................................................................................................................................2015.005.00----5.00-----------------------------
.......................................................................................................................................................................................................................................AGGAAGCATGCGCTGCGG..................................1812.002.00-----------2.00----------------------
....................................................................................................................................................................................................................................................TGCGGGTGCTGGACATGACGGG.................2212.002.00--2.00-------------------------------
.............................................................................................................................................................................................................................................................TGGACATGACGGGCCTCTTGGATGATGGT.2912.002.00--2.00-------------------------------
..................................................GTATGGACTTATCTGGAGGGTCG..................................................................................................................................................................................................................2311.001.00----------------------1.00-----------
..........................................................................................................................................................................GTGGCTGGGAGGGGGTGTT..............................................................................................191.000.00------------------------------1.00---
.......................................................................................................................................................................................................................................................GGGTGCTGGACATGACGGGCCTTTT...........251.000.00--------------------------------1.00-
...............................................................................................................................................................................................................................................TGCGCTGCGGGTGCTGGACA........................2011.001.00-----1.00----------------------------
...................................................................................................................................................................................................................................TCCCAGGAAGCATGCAGTT.....................................191.000.00---------------------------------1.00
....................................................................................................................................................................................................................................................TGCGGGTGCTGGACATG......................1711.001.00-----1.00----------------------------
.............................................................................GCCAGGGGTGTGTAAT..............................................................................................................................................................................................161.000.00-------------------------------1.00--
...............................................................................................................................................................................................CGCTGCCCCTCCACCTCC..........................................................................181.000.00-------------1.00--------------------
..................................................................................................................................................................................................................................................................ATGACGGGCCTCTTGGATGATGGT.2411.001.00--1.00-------------------------------
..........................................................................................................................................................................GTGGCTGGGAGGGGGTTG...............................................................................................181.000.00--------------1.00-------------------
.........................................................................................................................................................................................................................................................GTGCTGGACATGACGGGCCTCTTGGA........2611.001.00--1.00-------------------------------
.................AGAGCCTGGGGCCAGCACACAGCTCC................................................................................................................................................................................................................................................261.000.00-------------------------1.00--------
...........................................................................................................................................................................................................................................................GCTGGACATGACGGGCCTCTTGG.........2311.001.00-----1.00----------------------------
.................................................................................................................................................................................................................................................................CATGACGGGCCTCTTGGATGA.....2111.001.00--------------------1.00-------------
..................................................GTATGGACTTATCTGGAG.......................................................................................................................................................................................................................1811.001.00---------------1.00------------------
..................................................GTATGGACTTATCTGGAGGGTCGTC................................................................................................................................................................................................................2511.001.00---------------------1.00------------
......................................................................................................................................................................................................................................................CGGGTGCTGGACATGACGG..................1911.001.00--1.00-------------------------------
...........................................................................................................................................................................................................................................AGCATGCGCTGCGGGTGCTGGACAC.......................251.000.00---------1.00------------------------
.............................................................................................................................................................................................................................................................TGGACATGACGGGCCTCTTGGATGATA...271.000.00--1.00-------------------------------
.........................................................................................................................................ATGCAGGAGCAGGCGGGGG...............................................................................................................................191.000.00----------------------------1.00-----
......................................................................................................................................................................................................................................................................CGGGCCTCTTGGATGATGG..1911.001.00-----------------------1.00----------
..................................................GTATGGACTTATCTGGAGGGTCGTCAG..............................................................................................................................................................................................................2711.001.00------------------------1.00---------
.............................................................................................................................................................................................................................................................TGGACATGACGGGCCTCTTGGATGATGGTG3011.001.00--1.00-------------------------------
........................................................................................................................................................CGTTGCTCCTGTCCCCAG.................................................................................................................181.000.00------------------1.00---------------
................................................................................................................................................................................................................................................................ACATGACGGGCCTCTTGGA........1911.001.00----------------1.00-----------------
...........................................................................................................................................................................................................................................AGCATGCGCTGCGGGTGCTGGACATGACGGGC................3211.001.00------------1.00---------------------
..................................................................................................................................................................................................................................................GCTGCGGGTGCTGGATG........................171.000.00---------------------------1.00------
...............................................................................................................................................................................................................................................................GACATGACGGGCCTC.............1520.500.50---------0.50------------------------

Antisense strand
GCCCGGCTCCACACCTCAGAGCCTGGGGCCAGCACACAGCCCCTCTGCAGGTATGGACTTATCTGGAGGGTCGTCAGGCCAGGGGTGTGTAAGTGGGTCCCCTGAGGAGGCTTGGGTCATAAAGTTAGCAAGAGCTCATGCAGGAGCAGGCGCGTTGCTCCTGTCCCAAGGTGGCTGGGAGGGGGTATGGGCGCTGCCCCTCCACCCCTTCCTCACACCATTCCTACTCCCAGGAAGCATGCGCTGCGGGTGCTGGACATGACGGGCCTCTTGGATGATGGTG
..................................................((...(((((...(((.(((((.((....((((((.............))))))..)))))))...)))..))))).))....((((......))))........................................................................................................................................
..................................................51..................................................................................................151..................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)
.........................................................................................................................................................................................................................CCATTCCTACTCCCACTTT............................................... 192.000.00----------2.00-----------------------
...........................................................................................................................................................................................................TGGGAGTAGGAATGGTGTGAGGAAGGGGT................................................... 2912.002.00--2.00-------------------------------
................................................................................................................................CAAGAGCTCATGCAGGAAG........................................................................................................................................ 191.000.00------1.00---------------------------
..............................................TGACGACCCTCCAGATAAGTCCATACCTGC............................................................................................................................................................................................................... 3011.001.00--1.00-------------------------------
.........................................................................................................................................................................................................................CCATTCCTACTCCCACTTA............................................... 191.000.00-----------------1.00----------------
........................................................................................................................................................................................................TCCACCCCTTCCTCATAGT................................................................ 191.000.00-----------------------------1.00----
...........CACCTCAGAGCCTGGGCGG............................................................................................................................................................................................................................................................. 191.000.00-----1.00----------------------------
............................................................................................GTGGGTCCCCTGAGGAGGCTTGGGTC..................................................................................................................................................................... 261.000.00---------1.00------------------------
..................................................................................................................TGCATGAGCTCTTGCTAACTTTATGACC............................................................................................................................................. 2811.001.00--1.00-------------------------------
................................ACCTGCAGAGGGGCTGTGTG....................................................................................................................................................................................................................................... 2011.001.00--------------------------1.00-------
........CCACACCTCAGAGCCTGC................................................................................................................................................................................................................................................................. 181.000.00--1.00-------------------------------