ID: uc003zbp.2_intron_15_0_chr8_145474323_f.3p
GENE: (16)
chr8:145478569-145478818+


(3)
AGO2.ip
(2)
BRAIN
(8)
BREAST
(8)
CELL-LINE
(14)
CERVIX
(3)
LIVER
(1)
OTHER
(45)
SKIN

Sense strand
AGCTCTGTTTACAGATCCCTGGAGTCAGGGGAAGGGGTGAGCTCAGATCTGAGGCCAAGAGGCCATTTCCCAGCTGGCTGCAGCTGAGCCTGGTGGCTGTGTCTGAGCGTCGTGGAGCCAGGGTCCACGGCACCCAGGTGGCGGGGGGCAGGCGCCCTGACCAGCCACGGCCTCAAAGTGACTCTCCTGCTCTGCTCCAGCCACACCTGCATGCTGTGGCGGGCGCTGGCGGTGGAGCCTCGCCTAGCTG
..............................................................................................((..(((((((...(((((((.((....))))))))).(((........)))..))))))))).............................................................................................
............................................................................................93....................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532889(GSM532889)
G576N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532885(GSM532885)
G850N. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040022(GSM532907)
G575N. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532879(GSM532879)
G659N. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
.................................................................................................TGTGTCTGAGCGTCGCT........................................................................................................................................17220.000.50-3.002.002.001.00-2.00-2.001.00--1.00--1.001.00-1.00-1.00--------1.001.00--------------------------------------------------
.............................................................................................................................................CGGGGGGCAGGCGCCGGC...........................................................................................1846.251.50---0.25------0.500.250.25-----------------------0.50--0.50-----0.50-0.25--0.25-0.50--0.25-----0.25-0.250.25-0.250.25---0.250.250.250.25------
.............................................................................................................................................CGGGGGGCAGGCGCCGGCG..........................................................................................1944.751.50--0.25--0.25---0.250.250.25------------------------0.25--0.25--0.250.500.25---0.50-----------0.25-------0.25------0.25-0.250.250.25-
.............................................................................................................................................CGGGGGGCAGGCGCCGG............................................................................................1743.251.500.25---0.25-----0.25--0.25--------------0.75--------0.25--0.250.25--------------------0.25--0.25----------0.25----
................................................................................................CTGTGTCTGAGCGTCGCT........................................................................................................................................183.000.00----1.00------1.00-------------1.00-------------------------------------------------------
..................................................................................................GTGTCTGAGCGTCGTT........................................................................................................................................162.000.002.00--------------------------------------------------------------------------------
.............................................................................................................................................CGGGGGGCAGGCGCCG.............................................................................................1641.751.50----------------------------------------0.50---0.25--0.25-0.50--------------------0.25----------
.............................................................................................................................................CGGGGGGCAGGCGCC..............................................................................................1541.501.50--------------------------------------0.75------------0.50-----------------0.25-----------
..................................................................................................GTGTCTGAGCGTCGTTT.......................................................................................................................................171.000.001.00--------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GCGCTGGCGGTGGAGAG...........171.000.00---------------------------------1.00-----------------------------------------------
.................................................................................................TGTGTCTGAGCGTCGCTT.......................................................................................................................................1821.000.50-----------------1.00---------------------------------------------------------------
...................................................................................................TGTCTGAGCGTCGTGCT......................................................................................................................................1721.000.50----------------------------------1.00----------------------------------------------
...................................................................................................................................................................................................................................GGCGGTGGAGCCTCGGGC.....181.000.00----------------------1.00----------------------------------------------------------
........................................................................................................................................................................................................................TGGCGGGCGCTGGCGCGC................1831.000.67---0.33-----0.33-----------------------------------------------0.33-----------------------
...............TCCCTGGAGTCAGGGCG..........................................................................................................................................................................................................................171.000.00-------------------1.00-------------------------------------------------------------
...........................................................................................................................................GGCGGGGGGCAGGCGCCCGCG..........................................................................................211.000.00-------------1.00-------------------------------------------------------------------
.............................GGAAGGGGTGAGCTCAATC..........................................................................................................................................................................................................191.000.00------------------------1.00--------------------------------------------------------
................................................................................CAGCTGAGCCTGGTGTCGA.......................................................................................................................................................191.000.00--------------1.00------------------------------------------------------------------
........................................................................................................................................................................................................................TGGCGGGCGCTGGCG...................1530.670.67-----------------------------------------0.33----------------0.33----------------------
........................................................................................................................................................................................................................TGGCGGGCGCTGGCGCGCC...............1930.670.67------------------------------------------0.33-------------0.33------------------------
..................................................................................................GTGTCTGAGCGTCGTG........................................................................................................................................1620.500.50-------------------------------------0.50-------------------------------------------
.................................................................................................TGTGTCTGAGCGTCG..........................................................................................................................................1520.500.50----------0.50----------------------------------------------------------------------
...................................................................................................TGTCTGAGCGTCGTG........................................................................................................................................1520.500.50--0.50------------------------------------------------------------------------------
..............................................................................................................................................................................AAAGTGACTCTCCTGCTCTGCT......................................................2220.500.50-----------------------0.50---------------------------------------------------------
...............................................................................................................................................................................................................TGCATGCTGTGGCGGGCGCTGGC....................2320.500.50------------------------------------------------------0.50--------------------------
..........................................................................................TGGTGGCTGTGTCTGAGCGTCGTGGAG.....................................................................................................................................2720.500.50-----------------------0.50---------------------------------------------------------
........................................................................................................................................................................................................................TGGCGGGCGCTGGCGCCC................1830.330.67-----------------------------------------------------------0.33---------------------
.............................................................................................................................................CGGGGGGCAGGCGCCGGCT..........................................................................................1940.251.50--------------------------------------------------------------------------------0.25
.............................................................................................................................................CGGGGGGCAGGCGCCAG............................................................................................1740.251.50----------------------------0.25----------------------------------------------------
............................................................................................GTGGCTGTGTCTGAGC..............................................................................................................................................1660.170.17-------------------------------------------------------0.17-------------------------

Antisense strand
AGCTCTGTTTACAGATCCCTGGAGTCAGGGGAAGGGGTGAGCTCAGATCTGAGGCCAAGAGGCCATTTCCCAGCTGGCTGCAGCTGAGCCTGGTGGCTGTGTCTGAGCGTCGTGGAGCCAGGGTCCACGGCACCCAGGTGGCGGGGGGCAGGCGCCCTGACCAGCCACGGCCTCAAAGTGACTCTCCTGCTCTGCTCCAGCCACACCTGCATGCTGTGGCGGGCGCTGGCGGTGGAGCCTCGCCTAGCTG
..............................................................................................((..(((((((...(((((((.((....))))))))).(((........)))..))))))))).............................................................................................
............................................................................................93....................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532889(GSM532889)
G576N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532885(GSM532885)
G850N. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040022(GSM532907)
G575N. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532879(GSM532879)
G659N. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
................................................................................................................................................................................AGTGACTCTCCTGCTCTGCTCCAGCCAC.............................................. 282.000.00-------2.00-------------------------------------------------------------------------
............................................................................................................................................GCGGGGGGCAGGCGCCGGG........................................................................................... 192.000.00-----2.00---------------------------------------------------------------------------
.....................................................................................................................CCAGGGTCCACGGCATTCG.................................................................................................................. 191.000.00---------------------------1.00-----------------------------------------------------
.........................................CTCAGATCTGAGGCCATG............................................................................................................................................................................................... 181.000.00---------------------1.00-----------------------------------------------------------
.................................................TGAGGCCAAGAGGCCTGTA...................................................................................................................................................................................... 191.000.00--------------------------1.00------------------------------------------------------
....................................................................................................................................CCCAGGTGGCGGGGGGGGG................................................................................................... 191.000.00-----------------------------------1.00---------------------------------------------
............................................................................................................................................................................................GCTCTGCTCCAGCCAGCAA........................................... 191.000.00-------------------------------1.00-------------------------------------------------
....................................................................................................................................................................................................................................GCGGTGGAGCCTCGCCGGG... 191.000.00--------------------------------1.00------------------------------------------------
....AGGGATCTGTAAACAG...................................................................................................................................................................................................................................... 1620.500.50----------------------------------------------0.50----------------------------------
........................................................................................................................................................................CAGGAGAGTCACTTTGAGGCC............................................................. 2120.500.50-----------------------------------------------------0.50---------------------------
...................................................................................................................................................................................AGCAGAGCAGGAGAGTC...................................................... 1740.250.25--------------------------------------------------0.25------------------------------