| (7) B-CELL | (1) BRAIN | (2) BREAST | (19) CELL-LINE | (1) CERVIX | (2) HELA | (2) LIVER | (2) OTHER | (1) RRP40.ip | (8) SKIN | (1) TESTES | (1) XRN.ip |
| CTGTATCTGACTTGGCAGCTGGGGTGGGGCTGAGCTTCCACCTTTGATCCCGGCTGGTCTTTTGCTGTGATGGATGACTGATGACAATGACAGGGACAGGGCTGCACTGGGAGGGAAGGCGGCAGGGCCAGAGAAGTGCAGGTCTCCTCAGGTGGCGCTAGTCCAGCGCGGGGCCTCGCGGCCTCCTCTTCTCTTGCCAGTGTCCTGGAGAAGAAGAGGCGGCTCCTGGAGAAGCTGCAGGAGCAGCTGG ..........................................................((.((.((((.((...............)).)))).)).)).(((((.((........)))))))............................................................................................................................... .........................................................58.........................................................................133................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR038863(GSM458546) MM603. (cell line) | GSM359208(GSM359208) hepg2_bindASP_hl_2. (cell line) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330903(SRX091741) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM532874(GSM532874) G699T. (cervix) | SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR038858(GSM458541) MEL202. (cell line) | TAX577739(Rovira) total RNA. (breast) | SRR033732(GSM497077) bjab cell line (bjab103). (B cell) | SRR038861(GSM458544) MM466. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | TAX577738(Rovira) total RNA. (breast) | SRR444066(SRX128914) Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line) | SRR038862(GSM458545) MM472. (cell line) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR033731(GSM497076) h929 Cell line (h929). (B cell) | SRR038852(GSM458535) QF1160MB. (cell line) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR330869(SRX091707) tissue: skin psoriatic involveddisease state:. (skin) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................TGCTGTGATGGATGACTGATG....................................................................................................................................................................... | 21 | 1 | 49.00 | 49.00 | 5.00 | 8.00 | 7.00 | 2.00 | 3.00 | 3.00 | 1.00 | 2.00 | 2.00 | 1.00 | 2.00 | - | 2.00 | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | 1.00 | 1.00 | - | - | 1.00 | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................TTGCTGTGATGGATGACTGATG....................................................................................................................................................................... | 22 | 1 | 10.00 | 10.00 | - | 2.00 | - | 3.00 | 1.00 | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................GCTGTGATGGATGACTGATG....................................................................................................................................................................... | 20 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TGCTGTGATGGATGACTG.......................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................GCTGTGATGGATGACTGATC....................................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................CACTGGGAGGGAAGGCGGCAGGGCC......................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................GGTCTTTTGCTGTGAAATG................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................GTGATGGATGACTGATGACAATGACAGGGACA........................................................................................................................................................ | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TGCTGTGATGGATGACTGATGAG..................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................TTTGATCCCGGCTGGGGGC............................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................TGGAGAAGCTGCAGGAAAGT.... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................TTGCTGTGATGGATGACTGA......................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TGGGGCTGAGCTTCCGGA................................................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................AGTGTCCTGGAGAAGAAGAGGT.............................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................ATGACAGGGACAGGGCTG.................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..............................................................................................................................................................................................................................CTCCTGGAGAAGCTGGCAC......... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................ATGACAATGACAGGGATGTC...................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................TGACAGGGACAGGGCGGG................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................ATGACAATGACAGGGAGTT....................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................TCCTGGAGAAGAAGAGGCGGC........................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................TGGGGCTGAGCTTCCGGAG............................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................GGGAAGGCGGCAGGGCC......................................................................................................................... | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - |
| .......................................................................................................................................................................GCGGGGCCTCGCGGC.................................................................... | 15 | 6 | 0.17 | 0.17 | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................CCTGGAGAAGCTGCAGG......... | 17 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - |
| ...............................................TCCCGGCTGGTCTTT............................................................................................................................................................................................ | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - |
| ...........................................................................................................................................................................................................CCTGGAGAAGAAGAGGC.............................. | 17 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |
| CTGTATCTGACTTGGCAGCTGGGGTGGGGCTGAGCTTCCACCTTTGATCCCGGCTGGTCTTTTGCTGTGATGGATGACTGATGACAATGACAGGGACAGGGCTGCACTGGGAGGGAAGGCGGCAGGGCCAGAGAAGTGCAGGTCTCCTCAGGTGGCGCTAGTCCAGCGCGGGGCCTCGCGGCCTCCTCTTCTCTTGCCAGTGTCCTGGAGAAGAAGAGGCGGCTCCTGGAGAAGCTGCAGGAGCAGCTGG ..........................................................((.((.((((.((...............)).)))).)).)).(((((.((........)))))))............................................................................................................................... .........................................................58.........................................................................133................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR038863(GSM458546) MM603. (cell line) | GSM359208(GSM359208) hepg2_bindASP_hl_2. (cell line) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330903(SRX091741) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM532874(GSM532874) G699T. (cervix) | SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR038858(GSM458541) MEL202. (cell line) | TAX577739(Rovira) total RNA. (breast) | SRR033732(GSM497077) bjab cell line (bjab103). (B cell) | SRR038861(GSM458544) MM466. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | TAX577738(Rovira) total RNA. (breast) | SRR444066(SRX128914) Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line) | SRR038862(GSM458545) MM472. (cell line) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR033731(GSM497076) h929 Cell line (h929). (B cell) | SRR038852(GSM458535) QF1160MB. (cell line) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR330869(SRX091707) tissue: skin psoriatic involveddisease state:. (skin) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................GCGCGGGGCCTCGCGGGGG.................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................TCTCCAGGACACTGGCAAGAGAAGAGGA....................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TTCTCTGGCCCTGCCGCC................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |