ID: uc003ywc.1_intron_3_0_chr8_142229129_r.5p
GENE: SLC45A4(3)
chr8:142229549-142229798-


(1)
AGO2.ip 		(14)
BRAIN 		(7)
BREAST 		(5)
CELL-LINE 		(1)
FIBROBLAST 		(3)
OTHER 		(2)
SKIN 		(1)
UTERUS

Sense strand
GGACAGCGAGGAGCAGGACATGGCCCTCAACATCCACGCCTTCTCTGCCGGTAACGCTGCCGCACCAAGGCTGGGTGGCCGGGTTCCAACGTGCCCGGGCCTGGTGTGGGGAGGGGACAGGAGCCTGTGTTGTCAGCGCTGCCTCATCAGGCTGCATGGAGGGTTGAGGCAGTGGGCAGGGTCTTAGGGCTGGAAGGTAACCAGGGGCAGCCCCTCCTGACCACCAAGCACAGTGGGGCCAAGGCACTGA
........................................................................................................(((...((.((.((((....)))).)).))..((((((((((((...((....))..))).))))))))).)))..(((....)))............................................................
......................................................................................................103....................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormGSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGGTT................................................................2224.000.003.006.001.001.005.00--2.00--1.002.00--1.00-1.00----1.00-----------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTGTT................................................................2216.000.001.002.003.003.00-1.001.001.00--2.00-----1.00---1.00------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAGTT................................................................2214.000.003.001.001.002.001.001.00-1.001.001.001.00----1.00-----------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTGT.................................................................2110.000.001.001.001.00--2.002.00--1.00-1.00-------------1.00-------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGGTG................................................................224.000.001.00--1.00-1.00--------1.00------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGGT.................................................................213.000.00-2.00-1.00-----------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGATAG..................................................................203.000.001.00------------2.00-------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTAT.................................................................213.000.00--2.00---1.00--------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAGT.................................................................212.000.00--1.00------1.00-----------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCGGT.................................................................2191.000.11-0.11--0.220.110.11--0.11-0.11------------------0.110.11-
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTACT.................................................................211.000.00-1.00-------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTATT.................................................................211.000.001.00--------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTATG................................................................221.000.00-1.00-------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAGA.................................................................211.000.00---------1.00-----------------------
...........................................................................................................GGGGAGGGGACAGGAGCCGGGA.........................................................................................................................221.000.00-------------------1.00-------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAGAT................................................................221.000.001.00--------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTGTA................................................................221.000.001.00--------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGCT.................................................................211.000.00------1.00--------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGAT.................................................................211.000.001.00--------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGTGCG...................................................................191.000.00-----------------1.00---------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGT..................................................................201.000.001.00--------------------------------
...........................................................................................................................................TGCCTCATCAGGCTGCTGGT...........................................................................................201.000.00------------1.00--------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGATT................................................................221.000.00--1.00------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTCATT................................................................221.000.00--------1.00------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGTTT................................................................221.000.001.00--------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTCTTTA...............................................................231.000.00---1.00-----------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAGTG................................................................221.000.00------------------1.00--------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGA..................................................................201.000.00--1.00------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTATT................................................................221.000.00---------------1.00-----------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGTCA...................................................................191.000.00----------------------1.00----------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGGG.................................................................211.000.00---1.00-----------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTA..................................................................201.000.00---------------------------1.00-----
...........................................................................................TGCCCGGGCCTGGTGACTC............................................................................................................................................191.000.00-----------------------1.00---------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTGG..................................................................201.000.00--1.00------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTTG..................................................................201.000.00-------1.00-------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAA..................................................................201.000.00-----------------1.00---------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTAATT................................................................221.000.00--------1.00------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGTCGTT................................................................221.000.00--------1.00------------------------
...................................................................AGGCTGGGTGGCCGGGGGGA...................................................................................................................................................................201.000.00------------1.00--------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGTATA...................................................................191.000.00-----1.00---------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCTAT.................................................................2190.330.11--------0.22-----------------------0.11
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCTGT.................................................................2190.330.11-0.11----------------0.11-----------0.11--
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCGAT.................................................................2190.220.11--0.11------0.11-----------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCTG..................................................................2090.220.11--0.11--------0.11---------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGGGAT.................................................................2190.110.110.11--------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCGGA.................................................................2190.110.11-0.11-------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGG.....................................................................1790.110.11--0.11------------------------------
....................................................................................................................................................................TGAGGCAGTGGGCAGGGCGA..................................................................2090.110.11---0.11-----------------------------

Antisense strand
GGACAGCGAGGAGCAGGACATGGCCCTCAACATCCACGCCTTCTCTGCCGGTAACGCTGCCGCACCAAGGCTGGGTGGCCGGGTTCCAACGTGCCCGGGCCTGGTGTGGGGAGGGGACAGGAGCCTGTGTTGTCAGCGCTGCCTCATCAGGCTGCATGGAGGGTTGAGGCAGTGGGCAGGGTCTTAGGGCTGGAAGGTAACCAGGGGCAGCCCCTCCTGACCACCAAGCACAGTGGGGCCAAGGCACTGA
........................................................................................................(((...((.((.((((....)))).)).))..((((((((((((...((....))..))).))))))))).)))..(((....)))............................................................
......................................................................................................103....................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormGSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
.........................................................................................................................AGCCTGTGTTGTCAGTACG.............................................................................................................. 192.000.00--------------------------1.00-1.00----
..........................................................................................................................................CTGCCTCATCAGGCTTGTA............................................................................................. 191.000.00------------1.00--------------------
................................................................................................................................GTTGTCAGCGCTGCCTCACTG..................................................................................................... 211.000.00------------------------1.00--------
.................................................................................................................................................................................................................GGTGGTCAGGAGGGGC......................... 1630.330.33-----------------------------0.33---