ID: uc003yvj.2_intron_8_0_chr8_141285921_r.5p
GENE: TRAPPC9(14)
chr8:141293788-141294037-


(1)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN

Sense strand
GAAGTCATTCCCGCGTTGCCAAGACTGCAGATCAGCACCTCTCTGCCCAGGTAGTGTGCACGAGGGTCACAGAGCAGAGTGGCTCTGAGGCATCATTTTTGGTCCTACATTTTTTTTTTTTTTAATGGCACAAAGAGCCTGTAATTCTTATGACCAGAATATAGGTGAAGGATTTCTGTAAGATAAGCAACATCAATACGCTTTGCTTAAAATGAATTAGAACAAAGTTGAAATCTTTCTTACCATGATC
....................................................................................................((((((.((((............)))).........((((((.(((((.......)))))))))))..))))))............................................................................
...................................................................................................100..................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR343334SRR343337SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................CTACATTTTTTTTTTTTTTACAG...........................................................................................................................23391.000.00157.0094.0085.0055.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTACAG............................................................................................................................22256.000.00116.0055.0050.0034.001.00-------------------------
........................................................................................................CTACATTTTTTTTTTTTACAG.............................................................................................................................21142.000.0053.0024.0038.0025.002.00-------------------------
........................................................................................................CTACATTTTTTTTTTTACAG..............................................................................................................................2057.000.0022.0016.0011.008.00--------------------------
.........................................................................................................TACATTTTTTTTTTTTTTACAG...........................................................................................................................229.000.002.003.002.002.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAACAG..........................................................................................................................248.000.004.002.001.001.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTTACCG...........................................................................................................................236.000.002.00--4.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTTACAA...........................................................................................................................236.000.002.001.003.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTACAT.............................................................................................................................215.000.003.002.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTACAA............................................................................................................................225.000.003.001.00-1.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTATAG............................................................................................................................225.000.003.00-2.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTTATAG...........................................................................................................................234.000.001.002.00--1.00-------------------------
..........................................................................................................ACATTTTTTTTTTTTTTAATCCGG........................................................................................................................244.000.003.001.00----------------------------
.........................TGCAGATCAGCACCTCTCTGCCCAGA.......................................................................................................................................................................................................264.000.00-------4.00----------------------
........................................................................................................CTACATTTTTTTTTTTTTTCCAG...........................................................................................................................234.000.001.00-1.002.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAAAAG..........................................................................................................................243.000.001.002.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTACTG...........................................................................................................................233.000.001.001.001.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTAAAG.............................................................................................................................213.000.001.00-1.001.00--------------------------
.........................................................................................................TACATTTTTTTTTTTTTTAACATG.........................................................................................................................243.000.00-2.001.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTCCAG............................................................................................................................222.000.00-1.00-1.00--------------------------
..........................................................................................................ACATTTTTTTTTTTTTTAACATG.........................................................................................................................232.000.001.00--1.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTAT..............................................................................................................................202.000.001.001.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTATAG.............................................................................................................................212.000.001.001.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTATTT............................................................................................................................222.000.00--1.00-1.00-------------------------
........................................................................................................CTACATTTTTTTTTTTTACCG.............................................................................................................................212.000.001.001.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTAAG..............................................................................................................................202.000.001.001.00----------------------------
........................CTGCAGATCAGCACCTCCCTG.............................................................................................................................................................................................................212.000.00--------2.00---------------------
.....................AGACTGCAGATCAGCACC...................................................................................................................................................................................................................1812.002.00------2.00-----------------------
........................................................................................................CTACATTTTTTTTTTTTTTAACG...........................................................................................................................232.000.001.00-1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCAAG...........................................................................................................................232.000.00--1.001.00--------------------------
..........................................................................................................ACATTTTTTTTTTTTTTAATCCTG........................................................................................................................242.000.001.001.00----------------------------
..........................................................................................................ACATTTTTTTTTTTTTTAAACTG.........................................................................................................................231.000.00--1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTATAG..............................................................................................................................201.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCCCG...........................................................................................................................231.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTCCAG..............................................................................................................................201.000.00---1.00--------------------------
..............................................................................................................................................................ATATAGGTGAAGGATTTCGTAG......................................................................221.000.00-----------1.00------------------
........................................................................................................CTACATTTTTTTTTTTTTCACA............................................................................................................................221.000.00--1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTATAT............................................................................................................................221.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTACAC...........................................................................................................................231.000.001.00-----------------------------
........................................................................................................CTACATTTTTTTTTTTTATA..............................................................................................................................201.000.001.00-----------------------------
...................CAAGACTGCAGATCAGCACCT..................................................................................................................................................................................................................2111.001.00------------------------1.00-----
.................GCCAAGACTGCAGATCAGCACCTCT................................................................................................................................................................................................................2511.001.00------------1.00-----------------
........................................................................................................CTACATTTTTTTTTTTTTTACGT...........................................................................................................................231.000.00-1.00----------------------------
......................................................................AGAGCAGAGTGGCTCTAGT.................................................................................................................................................................191.000.00-----------1.00------------------
.........................................................................................................TACATTTTTTTTTTTTTTAAAATG.........................................................................................................................241.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCCA............................................................................................................................221.000.00--1.00---------------------------
.......................................................................................................CCTACATTTTTTTTTTTTTCTAT............................................................................................................................231.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAACTG..........................................................................................................................241.000.00---1.00--------------------------
..................CCAAGACTGCAGATCAGCA.....................................................................................................................................................................................................................1911.001.00-------------------1.00----------
......................................................................................................TCCTACATTTTTTTTTTTTTTTTCG...........................................................................................................................251.000.00--1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTACTT.............................................................................................................................211.000.00--1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTTACGG...........................................................................................................................231.000.001.00-----------------------------
..........................................................................................................ACATTTTTTTTTTTTTTAATCCTA........................................................................................................................241.000.00-1.00----------------------------
...................CAAGACTGCAGATCAGCAC....................................................................................................................................................................................................................1911.001.00------1.00-----------------------
........................................................................................................CTACATTTTTTTTTTTTTACCG............................................................................................................................221.000.00---1.00--------------------------
...........................................................................................................CATTTTTTTTTTTTTTAATAAT.........................................................................................................................221.000.00----1.00-------------------------
........................................................................................................CTACATTTTTTTTTTTTTTACAAG..........................................................................................................................241.000.001.00-----------------------------
..........................................................................................................ACATTTTTTTTTTTTTTAACATT.........................................................................................................................231.000.001.00-----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTATAT...........................................................................................................................231.000.00---1.00--------------------------
................TGCCAAGACTGCAGATCA........................................................................................................................................................................................................................1811.001.00---------------------1.00--------
........................................................................................................CTACATTTTTTTTTTTTTTAACA...........................................................................................................................231.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAGAG...........................................................................................................................231.000.00-1.00----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCAGG...........................................................................................................................231.000.001.00-----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCCGG...........................................................................................................................231.000.001.00-----------------------------
................TGCCAAGACTGCAGATC.........................................................................................................................................................................................................................1711.001.00----------------------1.00-------
.................GCCAAGACTGCAGATCAGCA.....................................................................................................................................................................................................................2011.001.00------1.00-----------------------
........................................................................................................CTACATTTTTTTTTTTTTACGG............................................................................................................................221.000.001.00-----------------------------
........................................................................................................CTACATTTTTTTTTTTTTCCC.............................................................................................................................211.000.001.00-----------------------------
........................................................................................................CTACATTTTTTTTTTTAACG..............................................................................................................................201.000.00-1.00----------------------------
.........................................................................................................TACATTTTTTTTTTTTTTCTTG...........................................................................................................................221.000.00---1.00--------------------------
..................CCAAGACTGCAGATCAGCACC...................................................................................................................................................................................................................2111.001.00-----------------------1.00------
........................................................................................................CTACATTTTTTTTTTTTTTACG............................................................................................................................221.000.00---1.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAGAA...........................................................................................................................231.000.00---1.00--------------------------
........................................................................................................CTACATTTTTTTTTTTTTCCGG............................................................................................................................221.000.00--1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAATG...........................................................................................................................2311.001.00-1.00----------------------------
....................AAGACTGCAGATCAGCACCTCT................................................................................................................................................................................................................2211.001.00------------1.00-----------------
........................................................................................................CTACATTTTTTTTTTTTTTACCCG..........................................................................................................................241.000.00--1.00---------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCTTC...........................................................................................................................231.000.00------------------1.00-----------
........................................................................................................CTACATTTTTTTTTTTATG...............................................................................................................................191.000.001.00-----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTCAT............................................................................................................................221.000.001.00-----------------------------
.........................................................................................................TACATTTTTTTTTTTTTTATTC...........................................................................................................................221.000.00----1.00-------------------------
........................................................................................................CTACATTTTTTTTTTTTTAAAA............................................................................................................................221.000.00---1.00--------------------------
.......................................................................................................CCTACATTTTTTTTTTTTCTTG.............................................................................................................................221.000.00--1.00---------------------------
..................CCAAGACTGCAGATCAG.......................................................................................................................................................................................................................1711.001.00--------------1.00---------------
..........................................................................................................ACATTTTTTTTTTTTTTAATG...........................................................................................................................2140.500.500.250.25----------------------------
........................................................................................................CTACATTTTTTTTTTTTTTAAT............................................................................................................................2250.400.400.20-0.20---------------------------
........................................................................................................................................................................AGGATTTCTGTAAGATAA................................................................1830.330.33-------------------------0.33----

Antisense strand
GAAGTCATTCCCGCGTTGCCAAGACTGCAGATCAGCACCTCTCTGCCCAGGTAGTGTGCACGAGGGTCACAGAGCAGAGTGGCTCTGAGGCATCATTTTTGGTCCTACATTTTTTTTTTTTTTAATGGCACAAAGAGCCTGTAATTCTTATGACCAGAATATAGGTGAAGGATTTCTGTAAGATAAGCAACATCAATACGCTTTGCTTAAAATGAATTAGAACAAAGTTGAAATCTTTCTTACCATGATC
....................................................................................................((((((.((((............)))).........((((((.(((((.......)))))))))))..))))))............................................................................
...................................................................................................100..................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR343334SRR343337SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................................................GCTTAAAATGAATTAGATAG.......................... 208.000.00-----4.00---3.001.00-------------------
............................................................................................................................................................................................................GCTTAAAATGAATTAGTAG........................... 192.000.00--------1.00-----------1.00---------
..........................................................................................................ACATTTTTTTTTTTTTTAATTATT........................................................................................................................ 241.000.00----------------1.00-------------
.....................................................................................................GTCCTACATTTTTTTTGA................................................................................................................................... 181.000.00-------------1.00----------------
........TCCCGCGTTGCCAAGATCG............................................................................................................................................................................................................................... 191.000.00----------1.00-------------------
......................................................................................................TCCTACATTTTTTTTTTTAGG............................................................................................................................... 211.000.00---------------1.00--------------
....................................................................ACAGAGCAGAGTGGCTTT.................................................................................................................................................................... 181.000.00-----------------1.00------------
..................................CCTGGGCAGAGAGGTGC....................................................................................................................................................................................................... 1730.330.33--------------------------0.33---
..........................................................................................................CATTAAAAAAAAAAAAAATGT........................................................................................................................... 2140.250.25---------------------------0.25--
.................................................................................................................TGTGCCATTAAAAAAAAAA...................................................................................................................... 1970.140.14----------------------------0.14-
..................................CTGGGCAGAGAGGTGC........................................................................................................................................................................................................ 1690.110.11-----------------------------0.11