ID: uc003yss.2_intron_8_0_chr8_130883743_r.5p
GENE: (6)
chr8:130891435-130891684-


(1)
AGO1.ip 		(7)
BRAIN 		(3)
BREAST 		(6)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(13)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GACATGCACAGACCTTGAGCAGGGGCCAAATTTTTTCCTTGATTTTGAAAGTGAGAAGATGATTTTATATCTATTTCTCTTTGCCTGCAGTAGACTGCGTTTGTCTTGCACTAAATGAATGTTTCCACTTTGCCATCTTTTTAACTGCTTTGCATGACTGAGCTATGAATTGTTTGAGTAAATTTCTGGTGCCTTCTAGAACTGGAAGTCCTATTTTATAGATTAAATTGTGATGATAAAATGTCTTTGA
.................................................................................(((..((((((((..(((...((...(((.........)))....))..)))..))).....)))))...)))..(((((((........)))).))).......................................................................
.................................................................66................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784GSM532876(GSM532876)
G547T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................CTGAGCTATGAATTGACAG..........................................................................19928.000.00226.00225.00211.0093.0075.0041.0035.006.003.001.001.00---1.002.00--1.00-1.001.002.001.00-----1.00-1.00--------
.............................................................................................................................................................CTGAGCTATGAATTGACA...........................................................................18155.000.0040.0024.0026.0023.0010.0012.009.002.001.003.002.001.00------1.00----------------1.00----
.............................................................................................................................................................CTGAGCTATGAATTGAAAG..........................................................................1916.000.003.004.001.002.005.00-1.00---------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGATAG..........................................................................1915.000.002.006.001.003.002.001.00----------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTCAGC.........................................................................2011.000.001.001.003.001.00--1.00----2.00---------------------1.00--1.00---
.............................................................................................................................................................CTGAGCTATGAATTGAGAG..........................................................................1910.000.001.001.001.00--4.003.00---------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGGCAG..........................................................................1910.000.00-4.003.002.001.00-----------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGACGG..........................................................................198.000.001.003.001.001.00-1.00---------------1.00------------------
.............................................................................................................................................................CTGAGCTATGAATTGAGA...........................................................................184.000.002.001.00---1.00----------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGATG...........................................................................184.000.00-1.00-1.002.00-----------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTCAGT.........................................................................203.000.00-2.00-----------------1.00--------------------
.............................................................................................................................................................CTGAGCTATGAATTGACAA..........................................................................193.000.001.001.00-1.00------------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGAAA...........................................................................182.000.00---1.00--1.00---------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGACGT..........................................................................192.000.00---1.001.00-----------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTTAGCC........................................................................212.000.00--1.00-----------1.00-------------------------
.............................................................................................................................................................CTGAGCTATGAATTGGCGG..........................................................................192.000.001.00-1.00-------------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGAC............................................................................172.000.00---------1.00----------------1.00-------------
....................................................................................................................................................................................................................ATTTTATAGATTAAACTGT...................191.000.00----------------1.00-----------------------
.............................................................................................................................................................CTGAGCTATGAATTGTCTGC.........................................................................201.000.00-------------------1.00--------------------
..............................................................................................................................................................TGAGCTATGAATTGTCATC.........................................................................191.000.00------1.00---------------------------------
.........................CCAAATTTTTTCCTTGATCTTG...........................................................................................................................................................................................................221.000.00------------1.00---------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTCAG..........................................................................191.000.00--1.00-------------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTCAGG.........................................................................201.000.00------1.00---------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGATT...........................................................................181.000.00-1.00--------------------------------------
.......................................................................................................................................................GCATGACTGAGCTATGAATTGTTTGAG........................................................................2711.001.00---------------------------1.00------------
.............................................................................................................................................................CTGAGCTATGAATTGGTG...........................................................................181.000.00-1.00--------------------------------------
....................................................................................................TTGTCTTGCACTAAAG......................................................................................................................................161.000.00----------------1.00-----------------------
.............................................................................................................................................................CTGAGCTATGAATTGAGGG..........................................................................191.000.00----1.00-----------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTTAGC.........................................................................201.000.00-----1.00----------------------------------
....................................................................................................................................................................................................................................TGTGATGATAAAATGTTAT...191.000.00-------------------------1.00--------------
.ACATGCACAGACCTTGAGCAGGGGCC...............................................................................................................................................................................................................................2611.001.00-----------------1.00----------------------
.............................................................................................................................................................CTGAGCTATGAATTGTC............................................................................171.000.00----------------------------1.00-----------
.............................................................................................................................................................CTGAGCTATGAATTGTTAAC.........................................................................201.000.00--------------------1.00-------------------
.............................................................................................................................................................CTGAGCTATGAATTGACAT..........................................................................191.000.00-1.00--------------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGACCG..........................................................................191.000.00---1.00------------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGAAAA..........................................................................191.000.001.00---------------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGATC...........................................................................181.000.00------1.00---------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGTAAG..........................................................................191.000.001.00---------------------------------------
....TGCACAGACCTTGAGCA.....................................................................................................................................................................................................................................1711.001.00-------------------------------------1.00--
......................................................................CTATTTCTCTTTGCCTCC..................................................................................................................................................................181.000.00-----------------1.00----------------------
.............................................................................................................................................................CTGAGCTATGAATTGACG...........................................................................181.000.00---1.00------------------------------------
...ATGCACAGACCTTGAGCAGGGGCC...............................................................................................................................................................................................................................2411.001.00------------------------1.00---------------
.............................................................................................................................................................CTGAGCTATGAATTGACCC..........................................................................191.000.00--------1.00-------------------------------
.............................................................................................................................................................CTGAGCTATGAATTGGCA...........................................................................181.000.00----1.00-----------------------------------
............................................................................................................................................................................................................................GATTAAATTGTGATGATA............1811.001.00----------------------------------1.00-----
.....GCACAGACCTTGAGCAGGG..................................................................................................................................................................................................................................1920.500.50--------------------------------------0.50-

Antisense strand
GACATGCACAGACCTTGAGCAGGGGCCAAATTTTTTCCTTGATTTTGAAAGTGAGAAGATGATTTTATATCTATTTCTCTTTGCCTGCAGTAGACTGCGTTTGTCTTGCACTAAATGAATGTTTCCACTTTGCCATCTTTTTAACTGCTTTGCATGACTGAGCTATGAATTGTTTGAGTAAATTTCTGGTGCCTTCTAGAACTGGAAGTCCTATTTTATAGATTAAATTGTGATGATAAAATGTCTTTGA
.................................................................................(((..((((((((..(((...((...(((.........)))....))..)))..))).....)))))...)))..(((((((........)))).))).......................................................................
.................................................................66................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784GSM532876(GSM532876)
G547T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
............CCTTGAGCAGGGGCCCT............................................................................................................................................................................................................................. 172.000.00-------------2.00--------------------------
.............................ATTTTTTCCTTGATTTTGAAA........................................................................................................................................................................................................ 211.000.00------------------------------1.00---------
........................................................................................AGTAGACTGCGTTTGTTTTG.............................................................................................................................................. 201.000.00--------------------------------1.00-------
..............................................GAAAGTGAGAAGATGACAG......................................................................................................................................................................................... 191.000.00------------1.00---------------------------
.............................................................................TACTGCAGGCAAAGA.............................................................................................................................................................. 1560.170.17---------------------------------------0.17