ID: uc003yod.2_intron_4_0_chr8_117864948_r.3p
GENE: (9)
chr8:117864898-117865147-


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
ATCTAAAATGTCTGCAGTTATAATTTGAAAACTCATTTAAAATCATTTTCAGATGGAATGAAATGTGAATATGATAAAAGCCATGCTAAATTATACACTTATATTTATTAGAACATACCTTTGGAAGATAGAAATCAGTGGTGACTTTTTAATTAGATTTATTTTATAATTGAAATTTTTCTTTTTTTTTTTTTTAATAGCTCTTTACACGCTGTCTTACACCGCTTGTACCAGAAGACCTTAGAAAAAG
...........................................................................................................................................((.((..(((((((((...........)))))))))..)).))....................................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343334SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040011(GSM532896)
G529T. (cervix)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTTTAATTCTG................................................2729.000.001.009.007.002.005.003.002.00-------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAACA...................................................256.000.00-4.00--2.00---------------------------
............................................................................................................................................................................................................TTACACGCTGTCTTACACCGCTTGTACCAGA...............3115.005.00--------5.00-----------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTAAGTTC.................................................283.000.002.00--1.00----------------------------
.........................................................................................................................................GTGGTGACTTTTTAAATA...............................................................................................183.000.00-------3.00------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAATATG.................................................273.000.00----1.001.001.00-------------------------
.......................................................................................................................................................................................................................CTTACACCGCTTGTACCAGAAGACCTCAG......292.000.00------2.00-------------------------
.....................................................................................................................................................................................................................GTCTTACACCGCTTGTACCAGAAGAC...........2612.002.00-------2.00------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTAATACAG................................................252.000.00--2.00-----------------------------
.......................................................................................................................................................................................................................CTTACACCGCTTGTACCAGAAGACCTTAGAAA...3212.002.00---------2.00----------------------
....................................................................................................ATATTTATTAGAACATACCTTTGGAAGA..........................................................................................................................2812.002.00-----------2.00--------------------
...............................................................................................................................................................................................................................GCTTGTACCAGAAGACCTT........1912.002.00-------------1.00-1.00----------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAAATG.................................................272.000.00------2.00-------------------------
.................................................................................................................................AGAAATCAGTGGTGAATTT......................................................................................................192.000.00------------2.00-------------------
...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTTTAATTCGG................................................272.000.00--1.001.00----------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCTGC...................................................262.000.002.00-------------------------------
............................................................................................................................................................................AAATTTTTCTTTTTTTTTTTTTTTAAG...................................................272.000.001.00-----1.00-------------------------
............................................................................................................................................................................AAATTTTTCTTTTTTTTTTTTTTGGAG...................................................272.000.002.00-------------------------------
............................................................................................................................................................................................................................ACCGCTTGTACCAGAAGACCTCAGA.....252.000.00---2.00----------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTATA....................................................242.000.00-1.001.00-----------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTGGGC...................................................251.000.001.00-------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCCCA...................................................261.000.001.00-------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAGAAC.................................................271.000.001.00-------------------------------
.........................................................................................................................................GTGGTGACTTTTTAAGG................................................................................................171.000.00-------1.00------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTACC......................................................231.000.001.00-------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTGTC.....................................................241.000.001.00-------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTGAGC....................................................251.000.00---1.00----------------------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATCCGG................................................261.000.00----1.00---------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTAATCTAG................................................251.000.00----1.00---------------------------
.................................................................................................................................................................................................................CGCTGTCTTACACCGC.........................1611.001.00-------------------------1.00------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAGGGT..................................................261.000.001.00-------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTCAC....................................................241.000.001.00-------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAAACA.................................................271.000.00-1.00------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCCAG...................................................261.000.001.00-------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTATAG...................................................261.000.00----1.00---------------------------
.................................................................................................................................................................................................................................TTGTACCAGAAGACCTTA.......1821.001.00----------------------1.00---------
...............................................................................................................................................ACTTTTTAATTAGATTTATTTTATAATTG..............................................................................2911.001.00-----1.00--------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTGATG.......................................................211.000.001.00-------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTGGTC...................................................251.000.001.00-------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCCG....................................................251.000.00-----1.00--------------------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATTAAG................................................261.000.00----1.00---------------------------
.........................................................................................................................................GTGGTGACTTTTTAAGAG...............................................................................................181.000.00-------1.00------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTATTGG..................................................261.000.001.00-------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTGCTG....................................................251.000.001.00-------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAAAG..................................................261.000.00--1.00-----------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTGCG........................................................201.000.001.00-------------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTAATTCTA................................................251.000.00--1.00-----------------------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATCTTG................................................261.000.00----1.00---------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTGGGC.......................................................211.000.001.00-------------------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTAATAACTG...............................................251.000.00----1.00---------------------------
...........................................................................................................................................................................................................................CACCGCTTGTACCAGAAGACCTTAGAA....2711.001.00--------------------------1.00-----
...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTTTAATTATG................................................271.000.00-1.00------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAACGG..................................................261.000.00--1.00-----------------------------
............................................................................................................................................................................................................TTACACGCTGTCTTACACCG..........................2011.001.00---------------------1.00----------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAAGCC.................................................271.000.00---1.00----------------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTAATAGCCGGG.............................................241.000.001.00-------------------------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATATAG................................................261.000.00-1.00------------------------------
..........................................................................................................................................TGGTGACTTTTTAATTAG..............................................................................................1811.001.00------------------------1.00-------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAAAAG.................................................271.000.00----1.00---------------------------
.........................................................................................................................TGGAAGATAGAAATCAGTGGTGACTCCGT....................................................................................................291.000.00---1.00----------------------------
...............................................................................................................AACATACCTTTGGAAGATAGAAATC..................................................................................................................2511.001.00-----------------1.00--------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTCTA....................................................241.000.00---1.00----------------------------
......................................................................................................................................................................................................................TCTTACACCGCTTGTACCAGAAGACCT.........2711.001.00-------------------1.00------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCG.....................................................241.000.00--1.00-----------------------------
............................................ATTTTCAGATGGAATGAAAT..........................................................................................................................................................................................2011.001.00----------------1.00---------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAACAA..................................................261.000.00-1.00------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTGCAG.......................................................211.000.00---1.00----------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAACA..................................................261.000.00-1.00------------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCCGG...................................................261.000.001.00-------------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTAAGTTC.................................................271.000.001.00-------------------------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATTTAG................................................261.000.00-----1.00--------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTAAAGC..................................................271.000.00------1.00-------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTCCCG...................................................261.000.00--1.00-----------------------------
.....................................................................................................................................................................................................................GTCTTACACCGCTTGTACCAGAAGACCT.........2811.001.00------------------1.00-------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTGGCT.......................................................211.000.00---1.00----------------------------
...........................................................................................................................................................................................................................CACCGCTTGTACCAGAAGACCTT........2311.001.00---------------------------1.00----
............................................................................................................................................................................AAATTTTTCTTTTTTTTTTTTTTAATAG..................................................2811.001.00-----1.00--------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTAATTCGG................................................251.000.00---1.00----------------------------
......................................................................................................................................................................................................................TCTTACACCGCTTGTACCAG................2011.001.00--------------1.00-----------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATTCCG................................................261.000.00---1.00----------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTGCAG.......................................................221.000.00---1.00----------------------------
........................................................................................................................................................................................................................TTACACCGCTTGTACCAGAAGACCTTT.......271.000.00-----------------------1.00--------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTGAT....................................................251.000.00---1.00----------------------------
................................................................................................................................................................................TTTTCTTTTTTTTTTTTTTAATCTAG................................................261.000.00-----1.00--------------------------
..............................................................................................................................................................................ATTTTTCTTTTTTTTTTTTTTCAAG...................................................251.000.00-----1.00--------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTAATTCCG................................................251.000.00--1.00-----------------------------
......................................................................................................................................................................................................................................CCAGAAGACCTTAGAAAA..1820.500.50-------------------------------0.50
.................................................................................................................................................................................................................................TTGTACCAGAAGACCTTAGA.....2020.500.50-------------0.50------------------
..................................................................................................................................................................................................................................TGTACCAGAAGACCTTAGAA....2020.500.50-----------------------------0.50--
...................................................................................................................................................................................................................................GTACCAGAAGACCTTAG......1720.500.50----------------------------0.50---
................................................................................................................................................................................................................................CTTGTACCAGAAGACCTTAGAAA...2320.500.50------------------------------0.50-
...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTTTAATAG..................................................2570.430.43----0.290.14--------------------------
.............................................................................................................................................................................AATTTTTCTTTTTTTTTTTTTTAAT....................................................2550.200.200.20-------------------------------

Antisense strand
ATCTAAAATGTCTGCAGTTATAATTTGAAAACTCATTTAAAATCATTTTCAGATGGAATGAAATGTGAATATGATAAAAGCCATGCTAAATTATACACTTATATTTATTAGAACATACCTTTGGAAGATAGAAATCAGTGGTGACTTTTTAATTAGATTTATTTTATAATTGAAATTTTTCTTTTTTTTTTTTTTAATAGCTCTTTACACGCTGTCTTACACCGCTTGTACCAGAAGACCTTAGAAAAAG
...........................................................................................................................................((.((..(((((((((...........)))))))))..)).))....................................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343334SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040011(GSM532896)
G529T. (cervix)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
...........CTGCAGTTATAATTTCTAG............................................................................................................................................................................................................................ 191.000.00----------1.00---------------------
..................................................................................................................................................................................................................TCTGGTACAAGCGGTGTAAGACAGC............... 2511.001.00--------------------1.00-----------
....................................................ATGGAATGAAATGTGATTG................................................................................................................................................................................... 191.000.00----------1.00---------------------