ID: uc003ync.2_intron_3_0_chr8_110352793_f.3p
GENE: (4)
chr8:110355434-110355683+


(1)
B-CELL 		(1)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(5)
LIVER 		(1)
OTHER 		(5)
SKIN

Sense strand
GGCATTGGATAGTTCATTTAAAATGATGAATTGCAAGAAGACACTTTTCTTTGTCAGATAACTTTACCTTTTTTTTAATTGAACATGAGGGTTATTTATGAAATTCTTATGTTGTTTACCCTGAGCAAAATGTCAGATCTTAAATTCTCATGTATTAATTGGTACCTTCTTACTCTTATTTTTTTATTTTTGTTTTTCAGCCCTGGTACCTGACAGTGTAAAGAAGGAGCTCCTACAAAGAATAAGAACA
.......................................................((((((.............(((((((((((((((((((...(((((.....))))).........((((........))))......))))))))))).)))))))).............)))))).....................................................................
.......................................................56..............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................................................ACTCTTATTTTTTTATTTTTG..........................................................21174.0074.0027.0023.0012.0011.001.00----------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATTTTTG..........................................................30116.0016.001.0012.002.001.00-----------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTTTG..........................................................29110.0010.003.003.002.002.00-----------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTG..................................................................227.000.003.002.002.00------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTCTG..........................................................295.000.003.002.00-------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTG..................................................................215.000.00-1.001.003.00-----------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATTTTCG..........................................................305.000.003.002.00-------------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATTTCTG..........................................................3015.001.003.002.00-------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTTCG..........................................................294.000.002.002.00-------------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATTCTTG..........................................................303.000.002.001.00-------------------------
.............................................................................................................................................................................................................................AGAAGGAGCTCCTACAAAGAATA......2312.002.00--------2.00------------------
...........................................................................................................................................................................ACTCTTATTTTTTTATTTCTG..........................................................212.000.00----2.00----------------------
......................................................................................................................................................................................................................AGTGTAAAGAAGGAGCTCCTACA.............2312.002.00------1.001.00-------------------
............................................................ACTTTACCTTTTTTTTTG............................................................................................................................................................................182.000.001.00---1.00----------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTA..................................................................211.000.00--1.00------------------------
.................................................................ACCTTTTTTTTAATTTAAG......................................................................................................................................................................191.000.00---1.00-----------------------
...........................................................AACTTTACCTTTTTTTTTG............................................................................................................................................................................191.000.001.00--------------------------
...........................................................................................................................................................................ACTCTTATTTTTTTATTCTTG..........................................................211.000.001.00--------------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATTT.............................................................2711.001.00----1.00----------------------
............................................................................................................................................................................CTCTTATTTTTTTATTTTTG..........................................................2011.001.00--1.00------------------------
..........................................................................................................................................................................................................................TAAAGAAGGAGCTCCTACAAAGAAT.......2511.001.00------------------1.00--------
...........................................................................................................................................................................ACTCTTATTTTTTTATTTTTGG.........................................................2211.0074.00----1.00----------------------
....................................................................................................................................................................................TTTTTATTTTTGTTTTTCAGCC................................................2211.001.00-----1.00---------------------
..............................................................TTTACCTTTTTTTTATCTT.........................................................................................................................................................................191.000.001.00--------------------------
....................................................................................................................................................................................TTTTTATTTTTGTTTTTCAGAGGT..............................................241.000.00----------1.00----------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTTTTG.............................................................271.000.00----1.00----------------------
.............................................................................................................................................................................................................................AGAAGGAGCTCCTACAAAGAATAA.....2411.001.00------------1.00--------------
...............................................................................................................................................................................TTATTTTTTTATTTTTGTTTTCGGC..................................................251.000.00-----1.00---------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTCT...........................................................281.000.00-1.00-------------------------
.............................................................................................................................................................................................................................AGAAGGAGCTCCTACAAAGAATAAGAA..2711.001.00-------------------1.00-------
........................................................................................................................................................................CTTACTCTTATTTTTTTATTTTTT..........................................................241.000.00---1.00-----------------------
...........................................................................................................................................................................ACTCTTATTTTTTTACCC.............................................................181.000.00----1.00----------------------
...........................................................................................................................................................................ACTCTTATTTTTTTATTTTTGTTTTCCAG..................................................291.000.00-----1.00---------------------
............................................................................................................................................................................................................................AAGAAGGAGCTCCTACAAAGAATAAGAACA3011.001.00------1.00--------------------
.....................................................................................................................................................................CTTCTTACTCTTATTTTTG..................................................................191.000.00---1.00-----------------------
...........................................................................................................................................................................ACTCTTATTTTTTTATTCCCG..........................................................211.000.001.00--------------------------
...........................................................................................................................................................................ACTCTTATTTTTTTATTTTTGTTTTCAGA..................................................291.000.00-----1.00---------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTTG...............................................................241.000.001.00--------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTTTT..............................................................251.000.00----1.00----------------------
.................................................................ACCTTTTTTTTAATTTTTG......................................................................................................................................................................191.000.00-1.00-------------------------
....................................................................................................................................................................CCTTCTTACTCTTATTTTTG..................................................................201.000.00---1.00-----------------------
...........................................................................................................................................................................................................................AAAGAAGGAGCTCCTACAAAGA.........2211.001.00-----------1.00---------------
...................................................................................................................................................................ACCTTCTTACTCTTATTCTTG..................................................................211.000.001.00--------------------------
........................................................................................................................................................................CTTACTCTTATTTTTTTATTTTTG..........................................................2411.001.00-1.00-------------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATCTTG...........................................................291.000.00-1.00-------------------------
.........................................................ATAACTTTACCTTTTTTTTAATCG.........................................................................................................................................................................241.000.00---------1.00-----------------
......................................................................................................................................................................................................................AGTGTAAAGAAGGAGCTCCTATC.............231.000.00------1.00--------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTTTG..............................................................261.000.001.00--------------------------
................................................................................................................................................................................................................................AGGAGCTCCTACAAAGA.........1711.001.00---------------1.00-----------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTG............................................................271.000.00--1.00------------------------
..................................................................................................................................................................................................................TGACAGTGTAAAGAAGGAGCTCCTAC..............2611.001.00-------1.00-------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTCTG...........................................................281.000.001.00--------------------------
.......................................................................................................................................................................TCTTACTCTTATTTTTTTTCTG.............................................................221.000.00-1.00-------------------------
.........................................................................................................CTTATGTTGTTTACCTCC...............................................................................................................................181.000.00-------------1.00-------------
.................................................................................................................................................................................ATTTTTTTATTTTTGTTCTG.....................................................201.000.00----------1.00----------------
.............................................................CTTTACCTTTTTTTTAACCAG........................................................................................................................................................................211.000.00-1.00-------------------------
............................................................................................................................................................................................................................AAGAAGGAGCTCCTACAAAGAA........2211.001.00------1.00--------------------
.................................................................ACCTTTTTTTTAATTTTGT......................................................................................................................................................................191.000.00----1.00----------------------
............................................................ACTTTACCTTTTTTTTTTCC..........................................................................................................................................................................201.000.00-----1.00---------------------
........................................................................................................................................................TATTAATTGGTACCTTCTTAC.............................................................................2111.001.00----1.00----------------------
..................................................................................................................................................................TACCTTCTTACTCTTATTTTTTTATTTCCG..........................................................3011.001.001.00--------------------------
.............................................................................................................................................................................................................................AGAAGGAGCTCCTACAAAGA.........2011.001.00--------1.00------------------
.......................................................................................................................................................................................................GCCCTGGTACCTGACGGA.................................181.000.00-----------------1.00---------
.......................................................................................................................................................................................................................GTGTAAAGAAGGAGCTCCA................191.000.00--------------1.00------------
..........................................................................................................................................................................TACTCTTATTTTTTTATTTTTCAG........................................................241.000.00-1.00-------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTCG..................................................................211.000.001.00--------------------------
.............................................................CTTTACCTTTTTTTTATAAG.........................................................................................................................................................................201.000.00---1.00-----------------------
............................................................ACTTTACCTTTTTTTTTTGG..........................................................................................................................................................................201.000.00--1.00------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTTG...........................................................281.000.00--1.00------------------------
.............................................................................................................................................................................TCTTATTTTTTTATTTTTTAAG.......................................................221.000.001.00--------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTTTGTTTT......................................................3311.001.00---1.00-----------------------
.........................................................................................................................................................................TTACTCTTATTTTTTTAAAG.............................................................201.000.00--1.00------------------------
...................................................................................................................................................................ACCTTCTTACTCTTATTTTTTTATTTTT...........................................................2811.001.00-1.00-------------------------
................................................................................GAACATGAGGGTTATTTTGG......................................................................................................................................................201.000.00----------------1.00----------
..................................................................................................................................................................................................................TGACAGTGTAAAGAAGGAGCTCCT................2420.500.50------------------------0.50--
.................................................................................................................................................................................................................CTGACAGTGTAAAGAAGGAGC....................2120.500.50----------------------0.50----
....................................................................................................................................................................................................................ACAGTGTAAAGAAGGAGCTCCT................2220.500.50-----------------------0.50---
...............................................................................................................................................................................................................ACCTGACAGTGTAAAGAAG........................1920.500.50--------------------0.50------
.................................................................................................................................................................................................................CTGACAGTGTAAAGAAGGAGCTCCT................2520.500.50---------------------0.50-----
..................................................................................................................................................................................................................TGACAGTGTAAAGAAGG.......................1730.330.33-------------------------0.33-
...............................................................................................................................................................................................................ACCTGACAGTGTAAAGAA.........................1830.330.33------0.33--------------------
...............................................................................................................................................................................................................ACCTGACAGTGTAAAGAAAATA.....................2230.330.33-------0.33-------------------
................................................................................................................................................................................................................CCTGACAGTGTAAAGAA.........................1750.200.20--------------------------0.20
................................................................TACCTTTTTTTTAATTG.........................................................................................................................................................................1770.140.140.14--------------------------
..................................................................................................................................................................................TTTTTTTATTTTTGTTTTTC....................................................2090.110.11----0.11----------------------

Antisense strand
GGCATTGGATAGTTCATTTAAAATGATGAATTGCAAGAAGACACTTTTCTTTGTCAGATAACTTTACCTTTTTTTTAATTGAACATGAGGGTTATTTATGAAATTCTTATGTTGTTTACCCTGAGCAAAATGTCAGATCTTAAATTCTCATGTATTAATTGGTACCTTCTTACTCTTATTTTTTTATTTTTGTTTTTCAGCCCTGGTACCTGACAGTGTAAAGAAGGAGCTCCTACAAAGAATAAGAACA
.......................................................((((((.............(((((((((((((((((((...(((((.....))))).........((((........))))......))))))))))).)))))))).............)))))).....................................................................
.......................................................56..............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.............................................TTTCTTTGTCAGATATCGT.......................................................................................................................................................................................... 191.000.00-------1.00-------------------
....................................................................................................................................................................................................................ACAGTGTAAAGAAGGGATA................... 191.000.00---------1.00-----------------