ID: uc003ykr.1_intron_29_0_chr8_103307761_r
GENE: (29)
chr8:103307711-103307913-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(4)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(3)
HELA 		(1)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
CTTTATCGCCTGCTCACTGCTACTAATCTGGTTACTCTGCCAAACAGCAGGCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTTCAGCCTCCCTCCTCACGACAACATTCTGTTTTGCAGGGGAGAGCACCTCTTACTATTCTTAGTACAGACAGTCGCAAGGCAGACGG
..................................................((((..((((......((....((.....))....))..((((((.((((...))))....)))))).....)))).......((((......))))))))....................................................
..................................................51....................................................................................................153................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTTCAGCCTCCCTCCTCACGACAACATTCTGTTTTGCAG..................................................103125.0025.0012.0013.00--------------------------
..................................................GCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTTCAGCCTCCCTCCTCACGACAACATTCTGTTTTGCA...................................................102120.0020.0016.004.00--------------------------
..................................................GCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTT......................................................................................6718.008.008.00---------------------------
..................................................GCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTTCAGCCTCCCTCCTCAC......................................................................8317.007.007.00---------------------------
..................................................GCAAGTGGGATTTTTAG........................................................................................................................................1715.005.00--4.00-----------1.00-------------
..................................................GCAAGTGGGATTTTTAGAACAT...................................................................................................................................2212.002.00-----2.00----------------------
.....................ACTAATCTGGTTACTCTGCCAAACAG............................................................................................................................................................2612.002.00---2.00------------------------
.......................................................................................................................................................AGGGGAGAGCACCTCTTA..................................1812.002.00--------2.00-------------------
..................................................GCAAGTGGGATTTTTAGAACATAC.................................................................................................................................2412.002.00----2.00-----------------------
......................CTAATCTGGTTACTCTGCCAAACAGCAG.........................................................................................................................................................2811.001.00------------1.00---------------
...........................CTGGTTACTCTGCCAAACAGCAG.........................................................................................................................................................2311.001.00-----------1.00----------------
............CTCACTGCTACTAATCTGGTTACTCTGCCAAACAGC...........................................................................................................................................................3611.001.00----------1.00-----------------
..................................................GCAAGTGGGATTTTTAGAAC.....................................................................................................................................2011.001.00--1.00-------------------------
..................................................GCAAGTGGGATTTTTAGAACATACA................................................................................................................................2511.001.00-------1.00--------------------
..............CACTGCTACTAATCTGGTTACTCTG....................................................................................................................................................................2511.001.00--------------------------1.00-
.........................ATCTGGTTACTCTGCCAAACAGCAGGGG......................................................................................................................................................281.000.00-------------------------1.00--
.....................ACTAATCTGGTTACTCTGCCAAACAGC...........................................................................................................................................................2711.001.00--------------------1.00-------
........................AATCTGGTTACTCTGC...................................................................................................................................................................1611.001.00------------------------1.00---
......................................................GTGGGATTTTTAGAACTCTG.................................................................................................................................201.000.00-----------------1.00----------
........................AATCTGGTTACTCTGCCAAACAGCAGG........................................................................................................................................................2711.001.00-------------1.00--------------
...........................CTGGTTACTCTGCCAAACAGCAGGGG......................................................................................................................................................261.000.00----1.00-----------------------
......................CTAATCTGGTTACTCTGCCAAACAG............................................................................................................................................................2511.001.00-------1.00--------------------
.......................TAATCTGGTTACTCTGCCAAACAGCAG.........................................................................................................................................................2711.001.00-------------------1.00--------
......................CTAATCTGGTTACTCTGCC..................................................................................................................................................................1911.001.00---1.00------------------------
................................................................................................................................................................CACCTCTTACTATTCCCAG........................191.000.00----------------------1.00-----
..................................................GCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTT.......................................................................................6611.001.00---------1.00------------------
......CGCCTGCTCACTGCTACT...................................................................................................................................................................................1811.001.00------1.00---------------------
..................................................GCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTTCAGCCTCCCTCCTCACGACAACATTCTGT.........................................................9611.001.00---------1.00------------------
..................................................................................................................................CACGACAACATTCTGAACA......................................................191.000.00------1.00---------------------
.......................................................TGGGATTTTTAGAACATACAGTAAGTTAAAT.....................................................................................................................3111.001.00---------------1.00------------

Antisense strand
CTTTATCGCCTGCTCACTGCTACTAATCTGGTTACTCTGCCAAACAGCAGGCAAGTGGGATTTTTAGAACATACAGTAAGTTAAATCAAAAGAGCGCAGCACAGCTGAGTAGCTTTTCAGCCTCCCTCCTCACGACAACATTCTGTTTTGCAGGGGAGAGCACCTCTTACTATTCTTAGTACAGACAGTCGCAAGGCAGACGG
..................................................((((..((((......((....((.....))....))..((((((.((((...))))....)))))).....)))).......((((......))))))))....................................................
..................................................51....................................................................................................153................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................CGCAGCACAGCTGAGGCT........................................................................................... 182.000.00------------------1.00----1.00----
....................................................................................................................................................................................ACAGACAGTCGCAAGGC...... 171.000.00---------------------1.00------
.....................................................................................................................CAGCCTCCCTCCTCATATG................................................................... 191.000.00----------------1.00-----------
.......AGTAGCAGTGAGCAGGC................................................................................................................................................................................... 1730.330.33---------------------------0.33