| (3) BRAIN | (9) CELL-LINE | (2) LIVER | (3) OTHER | (3) SKIN |
| GACTTTGTTGGATTTATTAATGTGAATCCTTGAAAAATTTCCTACTGATTTTAATATAGGTAAGACCAAGATCTGTAAATATTATTTTTATTCTGTTTTAGTAGGTAAGTATATAGCTTCTTTACAGTAGATGGACTTATTTTTTCACTACTATTATGAATTATTTTAATAACAATTTTTTTTTTTTTTTTACTTTGTAGAGATTGGGTCTTGCTATGTTGCCCAGGTTGATCTTGAACTCCTGGCCTCA .....................................................................................................................(((.....(((((.((((........))))))))).....))).......................................................................................... .................................................................................................................114...................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189784 | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189786 | SRR330894(SRX091732) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTG...................................................... | 23 | 154.00 | 0.00 | 87.00 | 44.00 | 15.00 | 4.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................CAATTTTTTTTTTTTTTTTACG........................................................ | 22 | 8.00 | 0.00 | 1.00 | 2.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTCAGG................................................... | 26 | 3.00 | 0.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTGG...................................................... | 23 | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTCG...................................................... | 23 | 3.00 | 0.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................TTTTTTTACTTTGTAGAGATAGGG.......................................... | 24 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTTGGAG.................................................. | 27 | 2.00 | 0.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTTGGAGG................................................. | 28 | 2.00 | 0.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTTCTTT......................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................TCTTTACAGTAGATGGACTT................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............ATTAATGTGAATCCTGCCG........................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ............................................................................................................................................................................CAATTTTTTTTTTTTTTTTACTCTAT.................................................... | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................CAATTTTTTTTTTTTTTTTACTCATG.................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................TCTTGAACTCCTGGCCGGCA | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TTTTTTTTTTTTTTTTACTTTACGG.................................................. | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTTAAAG.................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................AGCTTCTTTACAGTATTG...................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................ATTGGGTCTTGCTATGTTGCCGC......................... | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTGCC.................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................TTTTTTACTTTGTAGCAGT.............................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................TTGCTATGTTGCCCAGGGGAC................... | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTTCCTG......................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................CAATTTTTTTTTTTTTTTTACTTG...................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................AACAATTTTTTTTTTTTATTG........................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTAGG.................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTTCTTA......................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTTTTTTTTACTTTGTAGAGATTGGGTCTTG..................................... | 32 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTTCAGG.................................................. | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................CAATTTTTTTTTTTTTTTTACTCTAG.................................................... | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................TCTTGAACTCCTGGCCGGC | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..............................................................................................................................GTAGATGGACTTATTTTTTCACT..................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTCCAT.................................................... | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTTACT................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTCTC........................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................CAGTAGATGGACTTATTT............................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................ACTTTGTAGAGATTGGGTCTTGCT................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTTTTACTTTTATG.................................................. | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTCTTC.......................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................AATTATTTTAATAACAATTTTTTTTTTTTT.............................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TTTTTTTTTTTTTTTTACTTTATCC.................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TTTTTTTTTTTTTTTTACTTTGAAGC................................................. | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................TTATTCTGTTTTAGTAGGTA............................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................CTTGAACTCCTGGCCGGC | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTAT..................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACTTACTG................................................... | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ACAATTTTTTTTTTTTTTTTACTTTTTG................................................... | 28 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AATTTTTTTTTTTTTTTTACGTG...................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTTGGAGG................................................. | 27 | 6 | 0.33 | 0.17 | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTTGGG................................................... | 25 | 6 | 0.17 | 0.17 | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTTG..................................................... | 23 | 6 | 0.17 | 0.17 | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTTGGGG.................................................. | 26 | 6 | 0.17 | 0.17 | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ATTTTTTTTTTTTTTTTACTTTGGC................................................... | 25 | 6 | 0.17 | 0.17 | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GACTTTGTTGGATTTATTAATGTGAATCCTTGAAAAATTTCCTACTGATTTTAATATAGGTAAGACCAAGATCTGTAAATATTATTTTTATTCTGTTTTAGTAGGTAAGTATATAGCTTCTTTACAGTAGATGGACTTATTTTTTCACTACTATTATGAATTATTTTAATAACAATTTTTTTTTTTTTTTTACTTTGTAGAGATTGGGTCTTGCTATGTTGCCCAGGTTGATCTTGAACTCCTGGCCTCA .....................................................................................................................(((.....(((((.((((........))))))))).....))).......................................................................................... .................................................................................................................114...................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189784 | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189786 | SRR330894(SRX091732) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................GGGTCTTGCTATGTTGCCCAGGTTGACCCC............... | 30 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................TTTACAGTAGATGGAATCG............................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................AGGCCAGGAGTTCAAGATC.. | 19 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................AGATTGGGTCTTGCTATCC............................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................TGGGTCTTGCTATGTTGCCTT......................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ...........................................................................................................................................................................................................TTGGGTCTTGCTATGTTGCCCAGGTCC.................... | 27 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |