ID: uc003xxd.2_intron_3_0_chr8_67968840_r.3p
GENE: (3)
chr8:67968790-67969039-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(21)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(4)
HELA 		(1)
KIDNEY 		(14)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTTTATTAGAATGCTCATGTTAAATATTTGCCTCCGAAAGTTAATAATCCTATTATTAGAAAGCTCCATAGAAAACATGTTTTTCTCATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTCTTAATCTTCTGTTTACCTCATTTTTGTTTAGGGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATTCCACT
.............................................................................................(((((((((((((((((((((((((((....)))))))))))))))))))))))))))...................................................................................................
...................................................................................84...........................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334SRR189785SRR343335SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189783SRR343336SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577579(Rovira)
total RNA. (breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
..........................................................................................................................................................................TAATCTTCTGTTTACAATG.............................................................1941.000.00----13.00----5.009.004.00-----6.00--4.00----------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGA..........21237.0037.00-------------6.007.003.50---1.00--3.001.502.502.001.00-1.50-0.50------1.00----0.50---------0.500.500.50------0.50--0.50-0.500.50-0.500.500.50--0.500.50---
..........................................................................................................................................................................TAATCTTCTGTTTACAAT..............................................................1814.000.00---------7.00-7.00-------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATATG.......................................................................................................................................2710.000.00---1.001.00-------6.00---2.00--------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTAG.............................................................................245.000.001.00--3.00-1.00-------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATATATCAAG..................................................................................................................................325.000.00---1.004.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGACT........2324.504.50--------------0.500.50---1.00---0.50---0.50--0.50-0.50--------------------------0.50-------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAATATG.........................................................................274.000.00---2.00-1.001.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................GAAGGACCTTCTGAGTACCAGA..........2224.004.00-------------2.001.00-------------0.50---------------------------------------0.50----------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAAATG..........................................................................264.000.00---1.00-1.00-1.001.00----------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATCAAG......................................................................................................................................284.000.00----1.00-----------3.00--------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATATCAAG....................................................................................................................................304.000.00---1.002.00-----------1.00--------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTACATG..........................................................................254.000.00-------2.002.00----------------------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAG...........2023.503.50---------------2.00----------0.50--------------0.50----------0.50--------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGCC............................................................................243.000.002.00-1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGGGG.............................................................................233.000.003.00------------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATCAAG............................................................................................................................................223.000.00----1.00--2.00-----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCTTT............................................................................243.000.002.00-----1.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGGCC............................................................................243.000.001.00-2.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGGGG............................................................................243.000.001.00-2.00----------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATCTACTG......................................................................293.000.001.00----1.001.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGAGG...........................................................................252.000.001.00-1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGGTA...........................................................................252.000.00--2.00----------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATCAAG........................................................................................................................................262.000.00--------1.00-1.00--------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCTGGAG............................................................................262.000.00--2.00----------------------------------------------------------------------------
............................................................................................................................................................................................................................AGGACCTTCTGAGTACCAGA..........2022.002.00-----------------------------2.00-------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATACATG.....................................................................................................................................292.000.00---1.00--1.00------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTACTGG..........................................................................252.000.002.00------------------------------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGAC.........2222.002.00---------------------0.50--------0.50-------------------------------0.50--0.50-------------
..........................................................................................................................................................................................................................GAAGGACCTTCTGAGTACCAGACT........2422.002.00---------------0.50-------------------------0.50---------0.50-----------0.50---------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTACTGC..........................................................................252.000.00--2.00----------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATTCTG........................................................................272.000.00---1.00-1.00-------------------------------------------------------------------------
.......................................................................................CATTTTTATATATATATATATATATG.........................................................................................................................................262.000.00------------2.00------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGCG............................................................................242.000.001.00-1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCGAG...........................................................................252.000.001.00-1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCG.............................................................................232.000.00---1.00----1.00----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCTTG............................................................................242.000.00---1.00-1.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................................TGAAGGACCTTCTGAGTACCAGA..........2321.501.50---------------------1.50---------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCATA..........2121.500.50---------------0.50-----0.50---0.50-----------------------------------------------------
............................................................................................................................................................................................................................AGGACCTTCTGAGTACCAGACT........2221.501.50---------------0.50-------0.50----------------------------------0.50--------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTATTG...........................................................................2581.250.12-------0.880.38----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGCG..............................................................................221.000.001.00------------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCGGGT.............................................................................241.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTACCG............................................................................241.000.00---1.00---------------------------------------------------------------------------
.............................................................................................................................................................TTTTTTTTTTTCTTAATCTTCCCAG....................................................................251.000.00---1.00---------------------------------------------------------------------------
.................................................................................................................................................TATATATTTTTTTTTTTTTTTTTCGG...............................................................................261.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGGAC............................................................................241.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGTCT...........................................................................251.000.001.00------------------------------------------------------------------------------
...................................................................................................................................................TATATTTTTTTTTTTTTTTTTCGGG..............................................................................251.000.001.00------------------------------------------------------------------------------
...................................................................................................................................................TATATTTTTTTTTTTTTTTTTCTTAAAG...........................................................................281.000.00-----1.00-------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTCTTT............................................................................251.000.00--------1.00----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAATAAG.........................................................................271.000.00------1.00------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATATAG........................................................................271.000.00---1.00---------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATCTAAAT......................................................................291.000.00------1.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCCAC...........................................................................251.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGCC..............................................................................221.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCTCC...........................................................................251.000.00-----1.00-------------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATTCT.........................................................................251.000.00---1.00---------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATCACA........................................................................................................................................261.000.00----------1.00--------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTAAAG...........................................................................261.000.00-------1.00-----------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCAAAT.............................................................................251.000.00-------1.00-----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGCAG............................................................................241.000.00--1.00----------------------------------------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTTACAG................................................................................241.000.001.00------------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTAATTC..........................................................................271.000.001.00------------------------------------------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTTCATG................................................................................241.000.00---1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................GAAGGACCTTCTGAGTACCAGACTATTCCAC.3111.001.00--------------------------1.00----------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGCCG.............................................................................231.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGTT............................................................................241.000.001.00------------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTCGGT................................................................................221.000.001.00------------------------------------------------------------------------------
......................................................................................TCATTTTTATATATATATATATATATATATG.....................................................................................................................................311.000.00---1.00---------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCTAT..............................................................................241.000.00------1.00------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTCTGC................................................................................221.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGCTT.............................................................................231.000.00--1.00----------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTGCCG............................................................................251.000.00------1.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGGCT.............................................................................231.000.001.00------------------------------------------------------------------------------
.............................................................................................................................................TATATATATATTTTTTTTTTTTTTTCCG.................................................................................281.000.00---1.00---------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTACGG...........................................................................241.000.001.00------------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATGCTG........................................................................241.000.00---1.00---------------------------------------------------------------------------
.............................................................................................................................................................TTTTTTTTTTTCTTAATCTTCATG.....................................................................241.000.00---1.00---------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCGGC..............................................................................231.000.001.00------------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTCAT............................................................................251.000.00--------1.00----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTAAGG............................................................................241.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGGTT............................................................................241.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCCCG............................................................................241.000.00------1.00------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTATTG...........................................................................261.000.00-------1.00-----------------------------------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTTTTCTTGAG............................................................................281.000.001.00------------------------------------------------------------------------------
...................................................................................................................................TATATATATATATATATATATTTTTTTCAG.........................................................................................301.000.00---1.00---------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTATGGT..........................................................................251.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGGTG.............................................................................231.000.00--1.00----------------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATTCTG........................................................................261.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGGAT...........................................................................251.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGTAC...........................................................................251.000.001.00------------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCGCAA.............................................................................241.000.001.00------------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATAAG.........................................................................................................................................251.000.00----1.00--------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATCTCAA.......................................................................281.000.00---1.00---------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCTATTG............................................................................261.000.00-------1.00-----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAAAAG..........................................................................261.000.00-------1.00-----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAAAACG.........................................................................271.000.00-----1.00-------------------------------------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTTCGG.................................................................................231.000.001.00------------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATATAAAG....................................................................................................................................301.000.00----------1.00--------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATGGGC........................................................................241.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCCTT............................................................................241.000.00------1.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAACAG..........................................................................261.000.00---1.00---------------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATAAG.........................................................................251.000.00-----1.00-------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCTAGG.............................................................................251.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTACAG............................................................................241.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGCTG.............................................................................231.000.00--1.00----------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCTCTC.............................................................................251.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCCC............................................................................241.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCTAG............................................................................241.000.00---1.00---------------------------------------------------------------------------
...............................................................................................................................................TATATATATTTTTTTTTTTTTTTATTT................................................................................271.000.00--------1.00----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAATCTACTG......................................................................301.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAAATA..........................................................................261.000.00---1.00---------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGTGG.............................................................................231.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAAGAC..........................................................................261.000.001.00------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................AGTACCAGACTATTCCACT1911.001.00-------------------------------------------1.00-----------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGGGC.............................................................................231.000.00--1.00----------------------------------------------------------------------------
........................................................................................................................................................................................................................ATGAAGGACCTTCTGAGTACCAGACTATTCC...3111.001.00---------------------------1.00---------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTCTTG............................................................................251.000.00--------1.00----------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATACG.........................................................................261.000.00---1.00---------------------------------------------------------------------------
...................................................................................................................................................TATATTTTTTTTTTTTTTTTTCAAAC.............................................................................261.000.001.00------------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATCTTTTTT.....................................................................301.000.00--------1.00----------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATTCTA........................................................................241.000.00---1.00---------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATCTTTTTT.....................................................................271.000.00------1.00------------------------------------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTTTTCTAAG.............................................................................271.000.00-----1.00-------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATCTTAATG.....................................................................271.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCTAC............................................................................241.000.00------1.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCCG.............................................................................231.000.001.00------------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATATTTAA....................................................................................................................................301.000.00-----1.00-------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCGCC..............................................................................241.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAATG...........................................................................251.000.00------1.00------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAATAG..........................................................................261.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCGGAC.............................................................................231.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCTTT...........................................................................251.000.00--1.00----------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTAGTT............................................................................251.000.00--1.00----------------------------------------------------------------------------
........................................................................................................................................................................................................................ATGAAGGACCTTCTGAGTACCAGAC.........2521.001.00-------------------1.00-----------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATCTAAG.......................................................................261.000.00-----1.00-------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCGGTT.............................................................................251.000.001.00------------------------------------------------------------------------------
........................................................................................ATTTTTATATATATATATATATATATGCAA....................................................................................................................................301.000.00----1.00--------------------------------------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTTTTCTCTGC............................................................................281.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGGTC............................................................................241.000.00--1.00----------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTCG.............................................................................241.000.00-----1.00-------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATCTTTG.......................................................................251.000.00---1.00---------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGGC............................................................................241.000.00--1.00----------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTCGCA................................................................................221.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGGTC...........................................................................251.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTATTG............................................................................241.000.00--------1.00----------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTCTG............................................................................251.000.00-------1.00-----------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCATTG.............................................................................251.000.00-------1.00-----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCTC............................................................................241.000.00------1.00------------------------------------------------------------------------
.................................................................................................................................................TATATATTTTTTTTTTTTTTTTTCATTG.............................................................................281.000.00-------1.00-----------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTAGGG............................................................................241.000.00--1.00----------------------------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATTGGG........................................................................251.000.001.00------------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTATATT..........................................................................251.000.00-------1.00-----------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATCTACT.......................................................................271.000.00------1.00------------------------------------------------------------------------
...............................................................................................................................................TATATATATTTTTTTTTTTTTTTCGGC................................................................................271.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCTT............................................................................241.000.001.00------------------------------------------------------------------------------
...............................................................................................................................................................TTTTTTTTTCTTAATCTGGG.......................................................................201.000.00----------------------------------------1.00--------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCCTG............................................................................241.000.00--------1.00----------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTTGGAG...........................................................................261.000.001.00------------------------------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATTAAG........................................................................251.000.00---1.00---------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTAGC.............................................................................231.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCTG.............................................................................231.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCCA............................................................................241.000.00------1.00------------------------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATCTACTG......................................................................271.000.00-----1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGACTATTC....2711.001.00-------------------1.00-----------------------------------------------------------
............................................................................................TTATATATATATATATATATATATATAGCAG...............................................................................................................................311.000.00------------1.00------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAACA...........................................................................251.000.00------1.00------------------------------------------------------------------------
.........................................................................................................................................................................TTAATCTTCTGTTTACAATG.............................................................201.000.00----1.00--------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAAAAT..........................................................................261.000.00---1.00---------------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATCTACTG......................................................................281.000.00-----1.00-------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATTTTT........................................................................241.000.00-----1.00-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTGGCT............................................................................241.000.001.00------------------------------------------------------------------------------
............................................................................................................................................................................................ATTTTTGTTTAGGGCTACAAAC........................................2211.001.00------------------------------------------------1.00------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCTGCTT............................................................................261.000.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCTAG...........................................................................251.000.001.00------------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCGGG..............................................................................241.000.001.00------------------------------------------------------------------------------
...................................................................................................................................................TATATTTTTTTTTTTTTTTTTCTGAAG............................................................................271.000.00--1.00----------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATCTG.........................................................................261.000.00---1.00---------------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATC...........................................................................2331.001.000.67-0.33----------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTGGCC...........................................................................251.000.001.00------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTATTT...........................................................................2580.750.12-------0.120.62----------------------------------------------------------------------
......................................................................................................................................................................................................................TGATGAAGGACCTTCTGAGTACCAGACT........2820.500.50------------------------------------------------------------------------0.50------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGACA........2320.502.00--------------------------------------------------------0.50----------------------
.......................................................................................................................................................................................................................GATGAAGGACCTTCTGAGTACCAGAC.........2620.500.50------------------------------------------0.50------------------------------------
.....................................................................................................................................................................................................................CTGATGAAGGACCTTCTGAGTACCAGAC.........2820.500.50----------------------------------------------------------------------------0.50--
........................................................................................................................................................................................................................ATGAAGGACCTTCTGAGTACCAGACT........2620.500.50---------------------------0.50---------------------------------------------------
..........................................................................................................................................................................................................CTACAAACCTCCTGATGAAGGACC........................2420.500.50------------------------------------------------------------0.50------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTCTTAATC...........................................................................2420.500.500.50------------------------------------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGAA.........2220.5037.00-------------------------------------------------------0.50-----------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACC.............1820.500.50---------------------------------------------------------0.50---------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCAGT..........2120.503.50-------------------------------0.50-----------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTCTGAGTACCA............1920.500.50-------------0.50-----------------------------------------------------------------
..........................................................................................................................................................................................................................GAAGGACCTTCTGAGTACCAG...........2120.500.50------------------------------0.50------------------------------------------------
.......................................................................................................................................................................................................................GATGAAGGACCTTCTGAGTACCAGACT........2720.500.50-------------------------------------------------------------------------0.50-----
........................................................................................................................................................................................................................ATGAAGGACCTTCTGAGTACCAGA..........2420.500.50---------------------------------------------------0.50---------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTCTTAATCCAG........................................................................2630.331.00-----0.33-------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTGATGAAGGACCTTCTGAG.................2030.330.33-----------------------------------------------------------------------------0.33-
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATCCGG........................................................................2540.250.25---0.25---------------------------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATCACTG.......................................................................2640.250.25-----0.25-------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAGTT...........................................................................2580.250.120.25------------------------------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTCTTAATC...........................................................................2240.250.250.25------------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATCCTG........................................................................2480.120.12------0.12------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAGC............................................................................2480.120.120.12------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTA..............................................................................2280.120.120.12------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTACTTC..........................................................................2680.120.120.12------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTACTGC..........................................................................2680.120.120.12------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAGGTG..........................................................................2680.120.12------0.12------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAGGGG..........................................................................2680.120.120.12------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAGGC...........................................................................2580.120.120.12------------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTACTGG..........................................................................2680.120.12------0.12------------------------------------------------------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTAT.............................................................................2380.120.12--------0.12----------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTCTTAATC...........................................................................2180.120.120.12------------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTCTTAATCTCAG.......................................................................2390.110.11-----0.11-------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTCTTAATCT..........................................................................2090.110.11-----0.11-------------------------------------------------------------------------

Antisense strand
TTTTTATTAGAATGCTCATGTTAAATATTTGCCTCCGAAAGTTAATAATCCTATTATTAGAAAGCTCCATAGAAAACATGTTTTTCTCATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTCTTAATCTTCTGTTTACCTCATTTTTGTTTAGGGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATTCCACT
.............................................................................................(((((((((((((((((((((((((((....)))))))))))))))))))))))))))...................................................................................................
...................................................................................84...........................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334SRR189785SRR343335SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189783SRR343336SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577579(Rovira)
total RNA. (breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCACG.............................................................................. 2438.000.00-38.00-----------------------------------------------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTC................................................................................. 217.000.00------------------6.00---------------1.00--------------------------------------------
...................................................................................................................................................TATATTTTTTTTTTTTTTTGTT................................................................................. 225.000.00---------------------1.00-------------1.00--------1.001.00----1.00----------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTCACG............................................................................ 244.000.00-4.00-----------------------------------------------------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCACG.............................................................................. 232.000.00-2.00-----------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTCTTATAGT.......................................................................... 201.000.00--------------------------------------1.00----------------------------------------
................................................................................................................................................ATATATATTTTTTTTTTTTTTTTTG................................................................................. 251.000.00---------------------------------1.00---------------------------------------------
.........................................................................................................................................................................................................GCTACAAACCTCCTGATGATCTG.......................... 231.000.00---------------------------------------1.00---------------------------------------
....................................................................................................................................................ATATTTTTTTTTTTTTTTTTCGAT.............................................................................. 241.000.00-----------------------------------------------1.00-------------------------------
....TATTAGAATGCTCATGGTT................................................................................................................................................................................................................................... 191.000.00----1.00--------------------------------------------------------------------------
......................................................................................................................................................GAAAAAAAAAAAAAAAAAT................................................................................. 1901.001.00-------------------------------1.00-----------------------------------------------
..................................................................................................................................................ATATATTTTTTTTTTTTTTGCT.................................................................................. 221.000.00----------------------------------------------1.00--------------------------------
.....................................................................................................................................................TATTTTTTTTTTTTTTTTTCTAAA............................................................................. 241.000.00------------------------------------1.00------------------------------------------
.................................................................................................................................................TATATATTTTTTTTTTTTTTTTTATTT.............................................................................. 271.000.00-------------------------------------------------1.00-----------------------------
......................................................................................................................................................ATTTTTTTTTTTTTTTTTCTTCACG........................................................................... 251.000.00-1.00-----------------------------------------------------------------------------
...................................................................................................................................................TATATTTTTTTTTTTTTTTGTTC................................................................................ 231.000.00--------------------------------1.00----------------------------------------------
......................................................................................................................................................TAAGAAAAAAAAAAAAAAAAAT.............................................................................. 2280.120.12------------------------------------------------------------------------------0.12