ID: uc003xsm.2_intron_1_0_chr8_56982393_r.3p
GENE: RPS20(4)
chr8:56982343-56982592-


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(9)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(8)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CTGATATAAAATGGCATAGTATTTGCATATAATCTATGGCATCCTGTATAATTTGTCATCTCTAGATTACTTGTAATACCTAATACAATGTAAATGGTATGTAAGTAGTTATGCTGTATTCAGGGAATAATGACAAGAAAAAGAATGTCTATACATGTGCAGTAGAGACAATTTTTTTTCTGAATACTTTTGATCTACAGTTGATCGAATCTACAGATGCAGAACCCATGGATACAGAGGGCCAGCAGTA
.......................................................................................................................................(((((((((((((((.(((.......))).))))).)))))))))).....................................................................
...............................................................................................................................128..........................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
..................................................................................................................................................................TAGAGACAATTTTTTTTCTGAAT.................................................................23110.0010.009.00-------------------------1.00----------------------
....................................................................................................................................ACAAGAAAAAGAATGTCTATA.................................................................................................2118.008.00---2.00----1.00--------------------1.001.00--1.00-----1.001.00--------
...................................................................................................................................................................AGAGACAATTTTTTTTCTGAAT.................................................................2216.006.00-----2.00--1.00--1.00--------1.00----------1.00-----------------
...................................................................................................................................................................AGAGACAATTTTTTTTCTGA...................................................................2013.003.00------------------------1.00---------1.00---1.00----------
.............................................................................................................................................................................................................CGAATCTACAGATGCAGAACCCATT....................253.000.00----3.00--------------------------------------------
................................TCTATGGCATCCTGTATAATTTGT..................................................................................................................................................................................................2412.002.00--2.00----------------------------------------------
...................................................................................................................................................................AGAGACAATTTTTTTTCTG....................................................................1912.002.00------1.00------1.00-----------------------------------
....................................................................................................................................ACAAGAAAAAGAATGTCTATAC................................................................................................2212.002.00-------------------------1.00-1.00---------------------
......................................................................................................................TTCAGGGAATAATGACAAGAAAAAGAATGT......................................................................................................3012.002.00-2.00-----------------------------------------------
...................................................................................................................................................................AGAGACAATTTTTTTTCT.....................................................................1821.501.50----------0.50--------------------------------0.50-0.50---
...................................................................................................................................................................AGAGACAATTTTTTTTC......................................................................1771.291.29---0.14------0.43---------------------------------0.57---0.14
.......................................................................................................AGTAGTTATGCTGTATTCAGGG.............................................................................................................................2211.001.00--1.00----------------------------------------------
..........................................................................................................................................................................................................................GCAGAACCCATGGATACAGAGGGCCAGC....2811.001.00-1.00-----------------------------------------------
..........................................................................................................................................................................ATTTTTTTTCTGAATACTTTTGAT........................................................2411.001.00-----------------------------------1.00-------------
...................................................................................................................................................................AGAGACAATTTTTTTTCTGAA..................................................................2111.001.00------1.00------------------------------------------
...........................................................................................................................................................................................................ATCGAATCTACAGATGCA.............................1811.001.00----------------------1.00--------------------------
...................................................................................................................................................................AGAGACAATTTTTTTTCTGAAA.................................................................2211.001.00------------------1.00------------------------------
...................................................................................................TGTAAGTAGTTATGCTGTATTCAGGG.............................................................................................................................2611.001.00-1.00-----------------------------------------------
.................................CTATGGCATCCTGTATAATTTGT..................................................................................................................................................................................................2311.001.00-----1.00-------------------------------------------
........................................................................................................................CAGGGAATAATGACAAGAAAAAGAATGT......................................................................................................2811.001.00-1.00-----------------------------------------------
.........................................................................................................................................................CATGTGCAGTAGAGACAATT.............................................................................2011.001.00---------------1.00---------------------------------
...................................ATGGCATCCTGTATAATTTG...................................................................................................................................................................................................2011.001.00----------1.00--------------------------------------
....................................................................................................................................ACAAGAAAAAGAATGTCTAT..................................................................................................2011.001.00---------1.00---------------------------------------
......................................................................................................................................................................GACAATTTTTTTTCTCCTT.................................................................191.000.00-----------------------------------------1.00-------
.................................................................................................................................................................GTAGAGACAATTTTTTTTCTGA...................................................................2211.001.00-----------------------1.00-------------------------
.......................................................................................................................................................TACATGTGCAGTAGAGACA................................................................................1911.001.00---------1.00---------------------------------------
....................................................................................................................................................CTATACATGTGCAGTAGAGACAATTTTT..........................................................................2811.001.00--------------------------------1.00----------------
.........................................................................................................................................................................................................TGATCGAATCTACAGATGCAGAACCCA......................2711.001.00-1.00-----------------------------------------------
.......................................................................................................AGTAGTTATGCTGTATTCAGGGATT..........................................................................................................................251.000.00---------------------1.00---------------------------
..............................................TATAATTTGTCATCTCTAGATTACTT..................................................................................................................................................................................2611.001.00-1.00-----------------------------------------------
..............................................................................................................................................................................TTTTTCTGAATACTTTTGATCTACAG..................................................2611.001.00----------------1.00--------------------------------
...................................................................................................................................................TCTATACATGTGCAGTAGAGACA................................................................................2311.001.00-----------------1.00-------------------------------
....................................................................................................................................ACAAGAAAAAGAATGTCTATACA...............................................................................................2311.001.00---1.00---------------------------------------------
..........................................................................................................AGTTATGCTGTATTCAGG..............................................................................................................................1811.001.00------------------------------------1.00------------
...................................................................................................................................................................AGAGACAATTTTTTTTCTGAATA................................................................2311.001.00-------------------1.00-----------------------------
..................................................................................................................TGTATTCAGGGAATAATGACAAGAAAAAG...........................................................................................................2911.001.00--------------1.00----------------------------------
..................................................................................................................................................................................................................CTACAGATGCAGAACCCATGGATACAG.............2711.001.00--1.00----------------------------------------------
..........................................................................................................................GGGAATAATGACAAGAAAAGGCC.........................................................................................................231.000.00----------------------------1.00--------------------
..........................................................................................................AGTTATGCTGTATTCAGGGA............................................................................................................................2011.001.00-------------------------------------1.00-----------
........................................................................................................................................................................................................................ATGCAGAACCCATGGATACAGAGGGCCA......2830.670.67------------------------------------------0.67------
.........................................................................................................................................................................................................................TGCAGAACCCATGGATACAGAGGGCC.......2640.500.50-0.50-----------------------------------------------
.................................................................................AATACAATGTAAATGGTATGTAAGTAG..............................................................................................................................................2720.500.50----------------------------------------------0.50--
...........................................................................................................................................................................................................................CAGAACCCATGGATACAGAGGGCCA......2570.140.14-0.14-----------------------------------------------
......................................................................................................................................................................................................................AGATGCAGAACCCATGGATACAGAGG..........2670.140.14-------------------------------------------0.14-----

Antisense strand
CTGATATAAAATGGCATAGTATTTGCATATAATCTATGGCATCCTGTATAATTTGTCATCTCTAGATTACTTGTAATACCTAATACAATGTAAATGGTATGTAAGTAGTTATGCTGTATTCAGGGAATAATGACAAGAAAAAGAATGTCTATACATGTGCAGTAGAGACAATTTTTTTTCTGAATACTTTTGATCTACAGTTGATCGAATCTACAGATGCAGAACCCATGGATACAGAGGGCCAGCAGTA
.......................................................................................................................................(((((((((((((((.(((.......))).))))).)))))))))).....................................................................
...............................................................................................................................128..........................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
..................................................................................................................................................................................................................CTACAGATGCAGAACCCATGGATACACTTC.......... 302.000.00-------2.00-----------------------------------------
..............................................................................................TGGTATGTAAGTAGTAG........................................................................................................................................... 171.000.00------------1.00------------------------------------
...........................................................................................................................................TGTATAGACATTCTTT............................................................................................... 1650.200.20-----------------------------------------------0.20-