ID: uc003xoq.1_intron_1_0_chr8_42013558_f.3p
GENE: (2)
chr8:42015259-42015508+


(1)
AGO2.ip 		(1)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTACCATAAGCCAGTCTAGTGCTTTCTACCAAACAGACTGCCTAAGAGAACTATGGTTATGCTGCATTCCCTCGTTGTAGAAGAGTAGCCCAGAAACACATGGACAGGCCAGATCCTTATTCTCTGTAGGCACATTCTTTTATTTATTTATTTATTTTACAGTATCTGAGTGATCAATGTGTATATTCTGTCTCCATCAGGATTATTTTGGAGTCTGTTCAGAGCCAGTGATCAAAGACAATGTAGTTGT
......................................................((..(((...)))..)).....((((((((((.(((((((.......(((.........)))......))))..)))..))))))))))...........................................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR189785SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR040007(GSM532892)
G601T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTTACAG........................................................................................321186.00186.0095.0059.0021.0010.00--1.00-------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTG...........................................................................................28457.751.2526.7513.2512.005.25--0.50-------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTTG...............................................................................................2451.000.0018.0012.0018.001.00--2.00-------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTTTAG..........................................................................................2814.000.005.006.003.00-----------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTTTTAAG........................................................................................3013.000.002.004.002.005.00----------------------
.......................................................................................................................................TCTTTTATTTATTTATTTATCTAG...........................................................................................249.000.00--5.004.00----------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTTCAAG........................................................................................267.000.001.001.003.002.00----------------------
........................................................................................................................................CTTTTATTTATTTATTTATCTAG...........................................................................................234.000.00--4.00-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTCTG...........................................................................................284.000.001.00-2.001.00----------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTTACAT........................................................................................3214.004.001.002.001.00-----------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTTACA.........................................................................................3114.004.002.001.001.00-----------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTACAG..........................................................................................303.000.001.002.00------------------------
............................................AGAGAACTATGGTTAAG.............................................................................................................................................................................................173.000.00-------3.00------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTACAG.........................................................................................313.000.002.001.00------------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTACAG........................................................................................3113.003.002.001.00------------------------
..................................................................................................................................CACATTCTTTTATTTATTTTACA.................................................................................................233.000.002.001.00------------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTAAAG..........................................................................................272.000.00-2.00------------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTCTGG.............................................................................................242.000.00-----2.00--------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATCTTG...........................................................................................282.000.00--2.00-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTA...........................................................................................2822.002.001.50-0.50-----------------------
..........................................................ATGCTGCATTCCCTCTCG..............................................................................................................................................................................182.000.00-----------2.00--------------
.........................................................................................CCAGAAACACATGGACAGGCCAGATCC......................................................................................................................................2712.002.00--------2.00-----------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTTACA.............................................................................................272.000.002.00-------------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTTTACAG........................................................................................2912.002.001.00--1.00----------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTTTCAAG........................................................................................302.000.00--2.00-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTTA...............................................................................................242.000.001.00--1.00----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTCTG...............................................................................................242.000.00--2.00-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTT............................................................................................2741.251.25-0.750.25---0.25-------------------
.......................................................................................................................................TCTTTTATTTATTTATTTATTTTCAAG........................................................................................271.000.00---1.00----------------------
..........................................................................................................................................................................................................................TCAGAGCCAGTGATCAAAGACAATGTA.....2711.001.00------------1.00-------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTCG...........................................................................................281.000.001.00-------------------------
..............................................................................................AACACATGGACAGGCATCT.........................................................................................................................................191.000.00-----------------------1.00--
...................................................................................................................................ACATTCTTTTATTTATTTATTTATCTG............................................................................................271.000.00------1.00-------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATATTG...........................................................................................281.000.00--1.00-----------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTTCGT.........................................................................................251.000.00----1.00---------------------
......................................................................................................................................................................................................AGGATTATTTTGGAGTCTGTTCAGAGC.........................2711.001.00------------1.00-------------
.......................................................................................................................................TCTTTTATTTATTTATTTATTTTACTTG.......................................................................................281.000.001.00-------------------------
.......................................................................................................................................TCTTTTATTTATTTATTTATTGATC..........................................................................................251.000.00-----1.00--------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTCTTG..........................................................................................281.000.00---1.00----------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTTCATG........................................................................................261.000.00---1.00----------------------
.......................................................................................................................................TCTTTTATTTATTTATTTATTTTGCAG........................................................................................271.000.00-----1.00--------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTCTT..............................................................................................231.000.00----1.00---------------------
......................................................................CTCGTTGTAGAAGAGTAGCCCAGA............................................................................................................................................................2411.001.00---------------------1.00----
........................................................................................................................................CTTTTATTTATTTATTTATTTTATATG.......................................................................................271.000.00--1.00-----------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTTACATCTG.....................................................................................3511.004.00-1.00------------------------
......................................................................................................................................TTCTTTTATTTATTTATTTATTTCTGG.........................................................................................271.000.00----1.00---------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTTTCG..........................................................................................281.000.00--1.00-----------------------
........................................................................CGTTGTAGAAGAGTAGCCCAGAAACA........................................................................................................................................................2611.001.00-------------------1.00------
....................................................................................................................................CATTCTTTTATTTATTTATTCTG...............................................................................................231.000.00---1.00----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTG............................................................................................271.000.00-1.00------------------------
.............................................GAGAACTATGGTTATGCTGCATT......................................................................................................................................................................................2311.001.00------------------1.00-------
.....................................................................................................................................ATTCTTTTATTTATTTATTTACTC.............................................................................................241.000.00----1.00---------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTTACTTG.......................................................................................271.000.00---1.00----------------------
..............................................................................................................................TAGGCACATTCTTTTATTTATTTATTTATC..............................................................................................301.000.00----1.00---------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTTACAA........................................................................................3211.004.00-1.00------------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTCAAG.........................................................................................251.000.00--1.00-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTCG...............................................................................................241.000.001.00-------------------------
.......................................................................................................................................TCTTTTATTTATTTATCTAG...............................................................................................201.000.00---1.00----------------------
........................................................................................................................................CTTTTATTTATTTATTTATCTTG...........................................................................................231.000.00---1.00----------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTCTCG..........................................................................................281.000.00---1.00----------------------
.................................................................................AGAGTAGCCCAGAAACACATGGACAGGCCAG..........................................................................................................................................3111.001.00-----1.00--------------------
........................................................................CGTTGTAGAAGAGTAGCCCA..............................................................................................................................................................2011.001.00---------------1.00----------
...................................................................................................................................ACATTCTTTTATTTATTTATCTTG...............................................................................................241.000.00--1.00-----------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTCTAG..........................................................................................281.000.00--1.00-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTACAA........................................................................................311.000.001.00-------------------------
.........................................................................................................................................TTTTATTTATTTATTTATTTTACCTG.......................................................................................261.000.001.00-------------------------
.......................................................................................................................................TCTTTTATTTATTTATTTATCTG............................................................................................231.000.00---1.00----------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTTCTAG........................................................................................261.000.001.00-------------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTATG...........................................................................................271.000.001.00-------------------------
........................................................................................................................................CTTTTATTTATTTATTTATCG.............................................................................................211.000.00---1.00----------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTTCTG..........................................................................................281.000.00--1.00-----------------------
........AGCCAGTCTAGTGCTTGGAG..............................................................................................................................................................................................................................201.000.00----------1.00---------------
.......................................................................................................................................TCTTTTATTTATTTATTTATTTTACAG........................................................................................2711.001.00-1.00------------------------
....................................................................................................................................CATTCTTTTATTTATTTATTTATTTATTG.........................................................................................291.000.00-1.00------------------------
..................................................................................................................................CACATTCTTTTATTTATTTATTTATTTTACGG........................................................................................321.000.001.00-------------------------
.....................................................................................................................................................................................................................TCTGTTCAGAGCCAGTGATCAAAGAC...........2611.001.00---------1.00----------------
.........................CTACCAAACAGACTGCCTAA.............................................................................................................................................................................................................2011.001.00--------------1.00-----------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTATTG.........................................................................................301.000.001.00-------------------------
..................................................................................................................................CACATTCTTTTATTTATTTTA...................................................................................................211.000.001.00-------------------------
......................................................................................................................................................................................................................CTGTTCAGAGCCAGTGATCAAAGACAATGTAG....3211.001.00---------1.00----------------
.........................................................................................................................................TTTTATTTATTTATTTATTTTACATG.......................................................................................261.000.00---1.00----------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTTCTTG.........................................................................................281.000.00---1.00----------------------
......................................................................................................................................TTCTTTTATTTATTTATTTCAG..............................................................................................221.000.00--1.00-----------------------
......................................................................................................................................TTCTTTTATTTATTTATTTATTTCTG..........................................................................................261.000.00----1.00---------------------
.....................................................................................................................................ATTCTTTTATTTATTTATCTTG...............................................................................................221.000.00---1.00----------------------
........................................................................................................CAGGCCAGATCCTTATTCT...............................................................................................................................1911.001.00-----------------1.00--------
.......................................................................................................................................TCTTTTATTTATTTATTTATTTTATAG........................................................................................271.000.00---1.00----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATGTTG...........................................................................................281.000.00-1.00------------------------
........................................................................................................................TCTCTGTAGGCACATTCTTTTATTTACT......................................................................................................281.000.00----1.00---------------------
........................................................................................................................................CTTTTATTTATTTATTTATTTCTAA.........................................................................................251.000.00--1.00-----------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTTTTCCT........................................................................................291.000.00--1.00-----------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTTTAG..........................................................................................2750.600.400.200.200.20-----------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTAC..........................................................................................2920.500.50----0.50---------------------
.......................................................................TCGTTGTAGAAGAGT....................................................................................................................................................................1520.500.50------------------------0.50-
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTTTA...........................................................................................2650.400.40----0.40---------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTTTG.........................................................................................3040.251.250.25-------------------------
...................................................................................................................................ACATTCTTTTATTTATTTATTTATTTTTG..........................................................................................2940.251.25-0.25------------------------
.....................................................................................................................................ATTCTTTTATTTATTTATTTATTTTAAAG........................................................................................2950.200.400.20-------------------------
.........................................................................................................................................TTTTATTTATTTATTTATTTTACAG........................................................................................2550.200.20--0.20-----------------------
................................................................................................................................................................................................................................CCAGTGATCAAAGAC...........1570.140.14-------------------------0.14

Antisense strand
GTACCATAAGCCAGTCTAGTGCTTTCTACCAAACAGACTGCCTAAGAGAACTATGGTTATGCTGCATTCCCTCGTTGTAGAAGAGTAGCCCAGAAACACATGGACAGGCCAGATCCTTATTCTCTGTAGGCACATTCTTTTATTTATTTATTTATTTTACAGTATCTGAGTGATCAATGTGTATATTCTGTCTCCATCAGGATTATTTTGGAGTCTGTTCAGAGCCAGTGATCAAAGACAATGTAGTTGT
......................................................((..(((...)))..)).....((((((((((.(((((((.......(((.........)))......))))..)))..))))))))))...........................................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR189785SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR040007(GSM532892)
G601T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
................................ACAGACTGCCTAAGAGGCG....................................................................................................................................................................................................... 191.000.00--------------------1.00-----
......................................................................................................GACAGGCCAGATCCTTATAG................................................................................................................................ 201.000.00----------1.00---------------
...............................................................................................................................................................................................................................GCCAGTGATCAAAGACCATA....... 201.000.00----------------1.00---------
........................................................................................................................................................................................................................GTTCAGAGCCAGTGATCTG............... 191.000.00----------------------1.00---
........................................................................................................................................................................................................................GTTCAGAGCCAGTGATTCTG.............. 201.000.00-------------1.00------------